| Year |
Citation |
Score |
| 2023 |
Li M, Yao T, Lin W, Hinckley WE, Galli M, Muchero W, Gallavotti A, Chen JG, Huang SC. Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors. Nature Communications. 14: 2600. PMID 37147307 DOI: 10.1038/s41467-023-38096-2 |
0.732 |
|
| 2023 |
Yin L, Zander M, Huang SC, Xie M, Song L, Guzm N JPS, Hann E, Shanbhag BK, Ng S, Jain S, Janssen BJ, Clark NM, Walley JW, Beddoe T, Bar-Joseph Z, et al. Transcription Factor Dynamics in Cross-Regulation of Plant Hormone Signaling Pathways. Biorxiv : the Preprint Server For Biology. PMID 36945593 DOI: 10.1101/2023.03.07.531630 |
0.77 |
|
| 2023 |
Wanamaker SA, Garza RM, MacWilliams A, Nery JR, Bartlett A, Castanon R, Goubil A, Feeney J, O'Malley R, Huang SC, Zhang ZZ, Galli M, Ecker JR. Author Correction: CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Nature Methods. PMID 36690743 DOI: 10.1038/s41592-023-01768-4 |
0.7 |
|
| 2022 |
Hajheidari M, Huang SC. Elucidating the biology of transcription factor-DNA interaction for accurate identification of cis-regulatory elements. Current Opinion in Plant Biology. 68: 102232. PMID 35679803 DOI: 10.1016/j.pbi.2022.102232 |
0.306 |
|
| 2017 |
Huang SC, Ecker JR. Piecing together cis-regulatory networks: insights from epigenomics studies in plants. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. PMID 29194997 DOI: 10.1002/Wsbm.1411 |
0.576 |
|
| 2017 |
Ursu O, Gosline SJC, Beeharry N, Fink L, Bhattacharjee V, Huang SC, Zhou Y, Yen T, Fraenkel E. Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens. Plos One. 12: e0185650. PMID 29023490 DOI: 10.1371/Journal.Pone.0185650 |
0.582 |
|
| 2017 |
Bartlett A, O'Malley RC, Huang SC, Galli M, Nery JR, Gallavotti A, Ecker JR. Mapping genome-wide transcription-factor binding sites using DAP-seq. Nature Protocols. 12: 1659-1672. PMID 28726847 DOI: 10.1038/Nprot.2017.055 |
0.791 |
|
| 2017 |
Trigg SA, Garza RM, MacWilliams A, Nery JR, Bartlett A, Castanon R, Goubil A, Feeney J, O'Malley R, Huang SC, Zhang ZZ, Galli M, Ecker JR. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Nature Methods. PMID 28650476 DOI: 10.1038/Nmeth.4343 |
0.704 |
|
| 2017 |
Trigg S, Garza R, MacWilliams A, Nery JR, Bartlett A, Castanon R, Goubil A, Feeney J, O'Malley R, Huang SC, Zhang Z, Galli M, Ecker JR. CrY2H-seq interactome screening Protocol Exchange. DOI: 10.1038/Protex.2017.058 |
0.675 |
|
| 2016 |
Song L, Huang SC, Wise A, Castanon R, Nery JR, Chen H, Watanabe M, Thomas J, Bar-Joseph Z, Ecker JR. A transcription factor hierarchy defines an environmental stress response network. Science (New York, N.Y.). 354. PMID 27811239 DOI: 10.1126/Science.Aag1550 |
0.668 |
|
| 2016 |
O'Malley RC, Huang SC, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell. 166: 1598. PMID 27610578 DOI: 10.1016/J.Cell.2016.08.063 |
0.725 |
|
| 2016 |
Kawakatsu T, Huang SC, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, et al. Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell. 166: 492-505. PMID 27419873 DOI: 10.1016/J.Cell.2016.06.044 |
0.73 |
|
| 2016 |
Yazaki J, Galli M, Kim AY, Nito K, Aleman F, Chang KN, Carvunis AR, Quan R, Nguyen H, Song L, Alvarez JM, Huang SC, Chen H, Ramachandran N, Altmann S, et al. Mapping transcription factor interactome networks using HaloTag protein arrays. Proceedings of the National Academy of Sciences of the United States of America. PMID 27357687 DOI: 10.1073/Pnas.1603229113 |
0.762 |
|
| 2016 |
O'Malley RC, Huang SC, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell. 165: 1280-1292. PMID 27203113 DOI: 10.1016/J.Cell.2016.04.038 |
0.767 |
|
| 2015 |
Pedmale UV, Huang SC, Zander M, Cole BJ, Hetzel J, Ljung K, Reis PA, Sridevi P, Nito K, Nery JR, Ecker JR, Chory J. Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light. Cell. PMID 26724867 DOI: 10.1016/J.Cell.2015.12.018 |
0.715 |
|
| 2013 |
Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang SC, Schmitz RJ, Urich MA, Kuo D, Nery JR, Qiao H, Yang A, Jamali A, Chen H, et al. Author response: Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis Elife. DOI: 10.7554/Elife.00675.022 |
0.747 |
|
| 2009 |
Huang SC, Fraenkel E. Abstract B72: A computational approach integrating proteomic, transcriptional, and interactome data for discovery of cellular signaling networks Cancer Research. 69. DOI: 10.1158/0008-5472.Fbcr09-B72 |
0.627 |
|
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