| Year |
Citation |
Score |
| 2023 |
Barman P, Ferdoush J, Kaja A, Chakraborty P, Uprety B, Bhaumik R, Bhaumik R, Bhaumik SR. Ubiquitin-proteasome system regulation of a key gene regulatory factor, Paf1C. Gene. 894: 148004. PMID 37977317 DOI: 10.1016/j.gene.2023.148004 |
0.433 |
|
| 2023 |
Barman P, Chakraborty P, Bhaumik R, Bhaumik SR. UPS writes a new saga of SAGA. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194981. PMID 37657588 DOI: 10.1016/j.bbagrm.2023.194981 |
0.484 |
|
| 2023 |
Barman P, Kaja A, Chakraborty P, Guha S, Roy A, Ferdoush J, Bhaumik SR. A novel UPS regulation of Sgf73/ataxin-7 that maintains the integrity of the co-activator SAGA in orchestrating transcription. Genetics. PMID 37075097 DOI: 10.1093/genetics/iyad071 |
0.468 |
|
| 2021 |
Barman P, Sen R, Kaja A, Ferdoush J, Guha S, Govind CK, Bhaumik SR. Genome-wide regulations of the pre-initiation complex formation and elongating RNA polymerase II by an E3 ubiquitin ligase, San1. Molecular and Cellular Biology. MCB0036821. PMID 34661445 DOI: 10.1128/MCB.00368-21 |
0.546 |
|
| 2021 |
Kaja A, Adhikari A, Karmakar S, Zhang W, Rothschild G, Basu U, Batra SK, Davie JK, Bhaumik SR. Proteasomal regulation of mammalian SPT16 in controlling transcription. Molecular and Cellular Biology. PMID 33526453 DOI: 10.1128/MCB.00452-20 |
0.364 |
|
| 2020 |
Guha S, Bhaumik SR. Viral regulation of mRNA export with potentials for targeted therapy. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 1864: 194655. PMID 33246183 DOI: 10.1016/j.bbagrm.2020.194655 |
0.377 |
|
| 2020 |
Ferdoush J, Sen R, Durairaj G, Barman P, Kaja A, Guha S, Bhaumik SR. An F-box protein, Mdm30, interacts with TREX subunit, Sub2, to regulate cellular abundance co-transcriptionally in orchestrating mRNA export independently of splicing and mitochondrial function. Molecular and Cellular Biology. PMID 31932480 DOI: 10.1128/Mcb.00570-19 |
0.745 |
|
| 2019 |
Sen R, Barman P, Kaja A, Ferdoush J, Lahudkar S, Roy A, Bhaumik SR. Distinct functions of the cap-binding complex in stimulation of nuclear mRNA export. Molecular and Cellular Biology. PMID 30745412 DOI: 10.1128/Mcb.00540-18 |
0.822 |
|
| 2019 |
Barman P, Reddy D, Bhaumik SR. Mechanisms of Antisense Transcription Initiation with Implications in Gene Expression, Genomic Integrity and Disease Pathogenesis. Non-Coding Rna. 5. PMID 30669611 DOI: 10.3390/Ncrna5010011 |
0.568 |
|
| 2018 |
Uprety B, Kaja A, Bhaumik SR. TOR facilitates the targeting of the 19S proteasome subcomplex to enhance transcription complex assembly at the promoters of the ribosomal protein genes. Molecular and Cellular Biology. PMID 29712756 DOI: 10.1128/Mcb.00469-17 |
0.617 |
|
| 2018 |
Karmakar S, Dey P, Vaz AP, Bhaumik SR, Ponnusamy MP, Batra SK. PD2/PAF1 at the Crossroads of the Cancer Network. Cancer Research. PMID 29311159 DOI: 10.1158/0008-5472.Can-17-2175 |
0.353 |
|
| 2017 |
Ferdoush J, Sen R, Kaja A, Barman P, Bhaumik SR. Two Distinct Regulatory Mechanisms of Transcriptional Initiation in Response to Nutrient Signaling. Genetics. PMID 29141908 DOI: 10.1534/Genetics.117.300518 |
0.582 |
|
| 2017 |
Ferdoush J, Karmakar S, Barman P, Kaja A, Uprety B, Batra SK, Bhaumik SR. Ubiquitin-proteasome system regulation of an evolutionarily conserved RNA polymerase II-associated factor 1 involved in pancreatic oncogenesis. Biochemistry. PMID 29023102 DOI: 10.1021/Acs.Biochem.7B00865 |
0.459 |
|
| 2017 |
Sen R, Ferdoush J, Kaja A, Bhaumik SR. Correction for Sen et al., "Fine-Tuning of FACT by the Ubiquitin Proteasome System in Regulation of Transcriptional Elongation". Molecular and Cellular Biology. 37. PMID 28663277 DOI: 10.1128/Mcb.00281-17 |
0.366 |
|
| 2017 |
Sen R, Kaja A, Ferdoush J, Lahudkar S, Barman P, Bhaumik SR. An mRNA capping enzyme targets FACT to the active gene to enhance the engagement of RNA polymerase II into transcriptional elongation. Molecular and Cellular Biology. PMID 28396559 DOI: 10.1128/Mcb.00029-17 |
0.854 |
|
| 2016 |
Sen R, Ferdoush J, Kaja A, Bhaumik SR. Fine-tuning of FACT by ubiquitin proteasome system in regulation of transcriptional elongation. Molecular and Cellular Biology. PMID 27044865 DOI: 10.1128/Mcb.01112-15 |
0.655 |
|
| 2016 |
Uprety B, Kaja A, Ferdoush J, Sen R, Bhaumik SR. Regulation of antisense transcription by NuA4 histone acetyltransferase and other chromatin regulatory factors. Molecular and Cellular Biology. PMID 26755557 DOI: 10.1128/Mcb.00808-15 |
0.635 |
|
| 2015 |
Uprety B, Sen R, Bhaumik SR. Eaf1p Is Required for Recruitment of NuA4 in Targeting TFIID to the Promoters of the Ribosomal Protein Genes for Transcriptional Initiation In Vivo. Molecular and Cellular Biology. 35: 2947-64. PMID 26100014 DOI: 10.1128/Mcb.01524-14 |
0.594 |
|
| 2014 |
Malik S, Bhaumik SR. Regulation of active genome integrity and expression by Rad26p. Nucleus (Austin, Tex.). 5: 520-6. PMID 25484185 DOI: 10.4161/Nucl.36230 |
0.675 |
|
| 2014 |
Sen R, Malik S, Frankland-Searby S, Uprety B, Lahudkar S, Bhaumik SR. Rrd1p, an RNA polymerase II-specific prolyl isomerase and activator of phosphoprotein phosphatase, promotes transcription independently of rapamycin response. Nucleic Acids Research. 42: 9892-907. PMID 25114048 DOI: 10.1093/Nar/Gku703 |
0.833 |
|
| 2014 |
Durairaj G, Sen R, Uprety B, Shukla A, Bhaumik SR. Sus1p facilitates pre-initiation complex formation at the SAGA-regulated genes independently of histone H2B de-ubiquitylation. Journal of Molecular Biology. 426: 2928-41. PMID 24911582 DOI: 10.1016/J.Jmb.2014.05.028 |
0.854 |
|
| 2014 |
Durairaj G, Lahudkar S, Bhaumik SR. A new regulatory pathway of mRNA export by an F-box protein, Mdm30. Rna (New York, N.Y.). 20: 133-42. PMID 24327750 DOI: 10.1261/Rna.042325.113 |
0.797 |
|
| 2014 |
Lahudkar S, Durairaj G, Uprety B, Bhaumik SR. A novel role for Cet1p mRNA 5'-triphosphatase in promoter proximal accumulation of RNA polymerase II in Saccharomyces cerevisiase. Genetics. 196: 161-76. PMID 24172134 DOI: 10.1534/Genetics.113.158535 |
0.817 |
|
| 2013 |
Sen R, Bhaumik SR. Transcriptional stimulatory and repressive functions of histone H2B ubiquitin ligase. Transcription. 4: 221-6. PMID 24135701 DOI: 10.4161/trns.26623 |
0.458 |
|
| 2013 |
Malik S, Durairaj G, Bhaumik SR. Mechanisms of antisense transcription initiation from the 3' end of the GAL10 coding sequence in vivo. Molecular and Cellular Biology. 33: 3549-67. PMID 23836882 DOI: 10.1128/Mcb.01715-12 |
0.854 |
|
| 2013 |
Sen R, Lahudkar S, Durairaj G, Bhaumik SR. Functional analysis of Bre1p, an E3 ligase for histone H2B ubiquitylation, in regulation of RNA polymerase II association with active genes and transcription in vivo. The Journal of Biological Chemistry. 288: 9619-33. PMID 23417674 DOI: 10.1074/Jbc.M113.450403 |
0.81 |
|
| 2013 |
Chaurasia P, Sen R, Bhaumik SR. Functional analysis of Rad14p, a DNA damage recognition factor in nucleotide excision repair, in regulation of transcription in vivo. The Journal of Biological Chemistry. 288: 793-806. PMID 23188830 DOI: 10.1074/Jbc.M112.413716 |
0.63 |
|
| 2012 |
Chaurasia P, Sen R, Pandita TK, Bhaumik SR. Preferential repair of DNA double-strand break at the active gene in vivo. The Journal of Biological Chemistry. 287: 36414-22. PMID 22910905 DOI: 10.1074/Jbc.M112.364661 |
0.436 |
|
| 2012 |
Malik S, Bhaumik SR. Rad26p, a transcription-coupled repair factor, promotes the eviction and prevents the reassociation of histone H2A-H2B dimer during transcriptional elongation in vivo. Biochemistry. 51: 5873-5. PMID 22794311 DOI: 10.1021/Bi3005768 |
0.765 |
|
| 2012 |
Shukla A, Lahudkar S, Durairaj G, Bhaumik SR. Sgf29p facilitates the recruitment of TATA box binding protein but does not alter SAGA's global structural integrity in vivo. Biochemistry. 51: 706-14. PMID 22224423 DOI: 10.1021/Bi201708Z |
0.825 |
|
| 2012 |
Malik S, Chaurasia P, Lahudkar S, Uprety B, Bhaumik SR. Rad26p regulates the occupancy of histone H2A-H2B dimer at the active genes in vivo. Nucleic Acids Research. 40: 3348-63. PMID 22199252 DOI: 10.1093/Nar/Gkr1244 |
0.843 |
|
| 2012 |
Uprety B, Lahudkar S, Malik S, Bhaumik SR. The 19S proteasome subcomplex promotes the targeting of NuA4 HAT to the promoters of ribosomal protein genes to facilitate the recruitment of TFIID for transcriptional initiation in vivo. Nucleic Acids Research. 40: 1969-83. PMID 22086954 DOI: 10.1093/Nar/Gkr977 |
0.844 |
|
| 2012 |
Frankland-Searby S, Bhaumik SR. The 26S proteasome complex: an attractive target for cancer therapy. Biochimica Et Biophysica Acta. 1825: 64-76. PMID 22037302 DOI: 10.1016/J.Bbcan.2011.10.003 |
0.321 |
|
| 2011 |
Lahudkar S, Shukla A, Bajwa P, Durairaj G, Stanojevic N, Bhaumik SR. The mRNA cap-binding complex stimulates the formation of pre-initiation complex at the promoter via its interaction with Mot1p in vivo. Nucleic Acids Research. 39: 2188-209. PMID 21075799 DOI: 10.1093/Nar/Gkq1029 |
0.826 |
|
| 2011 |
Bhaumik SR. Distinct regulatory mechanisms of eukaryotic transcriptional activation by SAGA and TFIID. Biochimica Et Biophysica Acta. 1809: 97-108. PMID 20800707 DOI: 10.1016/J.Bbagrm.2010.08.009 |
0.599 |
|
| 2010 |
Durairaj G, Chaurasia P, Lahudkar S, Malik S, Shukla A, Bhaumik SR. Regulation of chromatin assembly/disassembly by Rtt109p, a histone H3 Lys56-specific acetyltransferase, in vivo. The Journal of Biological Chemistry. 285: 30472-9. PMID 20668333 DOI: 10.1074/Jbc.M110.113225 |
0.794 |
|
| 2010 |
Malik S, Bhaumik SR. Mixed lineage leukemia: histone H3 lysine 4 methyltransferases from yeast to human. The Febs Journal. 277: 1805-21. PMID 20236312 DOI: 10.1111/J.1742-4658.2010.07607.X |
0.686 |
|
| 2010 |
Malik S, Chaurasia P, Lahudkar S, Durairaj G, Shukla A, Bhaumik SR. Rad26p, a transcription-coupled repair factor, is recruited to the site of DNA lesion in an elongating RNA polymerase II-dependent manner in vivo. Nucleic Acids Research. 38: 1461-77. PMID 20007604 DOI: 10.1093/Nar/Gkp1147 |
0.78 |
|
| 2009 |
Malik S, Shukla A, Sen P, Bhaumik SR. The 19 s proteasome subcomplex establishes a specific protein interaction network at the promoter for stimulated transcriptional initiation in vivo. The Journal of Biological Chemistry. 284: 35714-24. PMID 19843524 DOI: 10.1074/Jbc.M109.035709 |
0.8 |
|
| 2009 |
Durairaj G, Garg P, Bhaumik SR. Nuclear export of mRNA and its regulation by ubiquitylation. Rna Biology. 6: 531-5. PMID 19838077 DOI: 10.4161/Rna.6.5.10078 |
0.769 |
|
| 2009 |
Shukla A, Durairaj G, Schneider J, Duan Z, Shadle T, Bhaumik SR. Stimulation of mRNA export by an F-box protein, Mdm30p, in vivo. Journal of Molecular Biology. 389: 238-47. PMID 19376128 DOI: 10.1016/J.Jmb.2009.04.018 |
0.816 |
|
| 2009 |
Shukla A, Chaurasia P, Bhaumik SR. Histone methylation and ubiquitination with their cross-talk and roles in gene expression and stability. Cellular and Molecular Life Sciences : Cmls. 66: 1419-33. PMID 19370393 DOI: 10.1007/S00018-008-8605-1 |
0.646 |
|
| 2009 |
Shukla A, Natarajan A, Bhaumik S, El-Shemy HA, Lightfoot D. The interactions of the largest subunit of RNA polymerase II with other cellular proteins: a bioinformatic approach. Current Issues in Molecular Biology. 11: i65-71. PMID 19193966 |
0.568 |
|
| 2009 |
Qin S, Wang Q, Ray A, Wani G, Zhao Q, Bhaumik SR, Wani AA. Sem1p and Ubp6p orchestrate telomeric silencing by modulating histone H2B ubiquitination and H3 acetylation. Nucleic Acids Research. 37: 1843-53. PMID 19188254 DOI: 10.1093/Nar/Gkn1049 |
0.518 |
|
| 2008 |
Bhaumik SR, Malik S. Diverse regulatory mechanisms of eukaryotic transcriptional activation by the proteasome complex. Critical Reviews in Biochemistry and Molecular Biology. 43: 419-33. PMID 19058045 DOI: 10.1080/10409230802605914 |
0.747 |
|
| 2008 |
Malik S, Bagla S, Chaurasia P, Duan Z, Bhaumik SR. Elongating RNA polymerase II is disassembled through specific degradation of its largest but not other subunits in response to DNA damage in vivo. The Journal of Biological Chemistry. 283: 6897-905. PMID 18195014 DOI: 10.1074/Jbc.M707649200 |
0.692 |
|
| 2007 |
Lee JS, Shukla A, Schneider J, Swanson SK, Washburn MP, Florens L, Bhaumik SR, Shilatifard A. Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS. Cell. 131: 1084-96. PMID 18083099 DOI: 10.1016/J.Cell.2007.09.046 |
0.653 |
|
| 2007 |
Bhaumik SR, Smith E, Shilatifard A. Covalent modifications of histones during development and disease pathogenesis. Nature Structural & Molecular Biology. 14: 1008-16. PMID 17984963 DOI: 10.1038/Nsmb1337 |
0.463 |
|
| 2007 |
Shukla A, Bhaumik SR. H2B-K123 ubiquitination stimulates RNAPII elongation independent of H3-K4 methylation. Biochemical and Biophysical Research Communications. 359: 214-20. PMID 17543890 DOI: 10.1016/J.Bbrc.2007.05.105 |
0.665 |
|
| 2007 |
Wood A, Shukla A, Schneider J, Lee JS, Stanton JD, Dzuiba T, Swanson SK, Florens L, Washburn MP, Wyrick J, Bhaumik SR, Shilatifard A. Ctk complex-mediated regulation of histone methylation by COMPASS. Molecular and Cellular Biology. 27: 709-20. PMID 17088385 DOI: 10.1128/Mcb.01627-06 |
0.686 |
|
| 2006 |
Bhaumik SR. Analysis of in vivo targets of transcriptional activators by fluorescence resonance energy transfer. Methods (San Diego, Calif.). 40: 353-9. PMID 17101448 DOI: 10.1016/J.Ymeth.2006.06.025 |
0.513 |
|
| 2006 |
Shukla A, Bajwa P, Bhaumik SR. SAGA-associated Sgf73p facilitates formation of the preinitiation complex assembly at the promoters either in a HAT-dependent or independent manner in vivo. Nucleic Acids Research. 34: 6225-32. PMID 17090597 DOI: 10.1093/Nar/Gkl844 |
0.713 |
|
| 2006 |
Schneider J, Bajwa P, Johnson FC, Bhaumik SR, Shilatifard A. Rtt109 is required for proper H3K56 acetylation: a chromatin mark associated with the elongating RNA polymerase II. The Journal of Biological Chemistry. 281: 37270-4. PMID 17046836 DOI: 10.1074/Jbc.C600265200 |
0.554 |
|
| 2006 |
Shukla A, Stanojevic N, Duan Z, Shadle T, Bhaumik SR. Functional analysis of H2B-Lys-123 ubiquitination in regulation of H3-Lys-4 methylation and recruitment of RNA polymerase II at the coding sequences of several active genes in vivo. The Journal of Biological Chemistry. 281: 19045-54. PMID 16675445 DOI: 10.1074/Jbc.M513533200 |
0.721 |
|
| 2006 |
Shukla A, Stanojevic N, Duan Z, Sen P, Bhaumik SR. Ubp8p, a histone deubiquitinase whose association with SAGA is mediated by Sgf11p, differentially regulates lysine 4 methylation of histone H3 in vivo. Molecular and Cellular Biology. 26: 3339-52. PMID 16611979 DOI: 10.1128/Mcb.26.9.3339-3352.2006 |
0.638 |
|
| 2004 |
Bhaumik SR, Raha T, Aiello DP, Green MR. In vivo target of a transcriptional activator revealed by fluorescence resonance energy transfer. Genes & Development. 18: 333-43. PMID 14871930 DOI: 10.1101/Gad.1148404 |
0.48 |
|
| 2003 |
Bhaumik SR, Green MR. Interaction of Gal4p with components of transcription machinery in vivo. Methods in Enzymology. 370: 445-54. PMID 14712666 DOI: 10.1016/S0076-6879(03)70038-X |
0.388 |
|
| 2003 |
Shen WC, Bhaumik SR, Causton HC, Simon I, Zhu X, Jennings EG, Wang TH, Young RA, Green MR. Systematic analysis of essential yeast TAFs in genome-wide transcription and preinitiation complex assembly. The Embo Journal. 22: 3395-402. PMID 12840001 DOI: 10.1093/Emboj/Cdg336 |
0.518 |
|
| 2002 |
Bhaumik SR, Green MR. Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo. Molecular and Cellular Biology. 22: 7365-71. PMID 12370284 DOI: 10.1128/Mcb.22.21.7365-7371.2002 |
0.564 |
|
| 2002 |
Li XY, Bhaumik SR, Zhu X, Li L, Shen WC, Dixit BL, Green MR. Selective recruitment of TAFs by yeast upstream activating sequences. Implications for eukaryotic promoter structure. Current Biology : Cb. 12: 1240-4. PMID 12176335 DOI: 10.1016/S0960-9822(02)00932-6 |
0.577 |
|
| 2001 |
Bhaumik SR, Green MR. SAGA is an essential in vivo target of the yeast acidic activator Gal4p Genes and Development. 15: 1935-1945. PMID 11485988 DOI: 10.1101/Gad.911401 |
0.579 |
|
| 2000 |
Li XY, Bhaumik SR, Green MR. Distinct classes of yeast promoters revealed by differential TAF recruitment Science. 288: 1242-1244. PMID 10817999 DOI: 10.1126/Science.288.5469.1242 |
0.557 |
|
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