| Year |
Citation |
Score |
| 2023 |
Bruce JW, Park E, Magnano C, Horswill M, Richards A, Potts G, Hebert A, Islam N, Coon JJ, Gitter A, Sherer N, Ahlquist P. HIV-1 virological synapse formation enhances infection spread by dysregulating Aurora Kinase B. Plos Pathogens. 19: e1011492. PMID 37459363 DOI: 10.1371/journal.ppat.1011492 |
0.572 |
|
| 2023 |
He Y, Shishkova E, Peters-Clarke TM, Brademan DR, Westphall MS, Bergen D, Huang J, Huguet R, Senko MW, Zabrouskov V, McAlister GC, Coon JJ. Evaluation of the Orbitrap Ascend Tribrid Mass Spectrometer for Shotgun Proteomics. Analytical Chemistry. PMID 37389810 DOI: 10.1021/acs.analchem.3c01155 |
0.761 |
|
| 2023 |
Brademan DR, Overmyer KA, He Y, Barshop WD, Canterbury JD, Bills BJ, Anderson BJ, Hutchins PD, Sharma S, Zabrouskov V, McAlister GC, Coon JJ. Improved Structural Characterization of Glycerophospholipids and Sphingomyelins with Real-Time Library Searching. Analytical Chemistry. PMID 37172325 DOI: 10.1021/acs.analchem.2c04633 |
0.707 |
|
| 2023 |
Khana DB, Tatli M, Rivera Vazquez J, Weraduwage SM, Stern N, Hebert AS, Angelica Trujillo E, Stevenson DM, Coon JJ, Sharky TD, Amador-Noguez D. Systematic Analysis of Metabolic Bottlenecks in the Methylerythritol 4-Phosphate (MEP) Pathway of Zymomonas mobilis. Msystems. e0009223. PMID 36995223 DOI: 10.1128/msystems.00092-23 |
0.587 |
|
| 2023 |
Zhang Q, Linke V, Overmyer KA, Traeger LL, Kasahara K, Miller IJ, Manson DE, Polaske TJ, Kerby RL, Kemis JH, Trujillo EA, Reddy TR, Russell JD, Schueler KL, Stapleton DS, ... ... Coon JJ, et al. Author Correction: Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut. Nature Microbiology. PMID 36973420 DOI: 10.1038/s41564-023-01366-2 |
0.76 |
|
| 2023 |
Sinitcyn P, Richards AL, Weatheritt RJ, Brademan DR, Marx H, Shishkova E, Meyer JG, Hebert AS, Westphall MS, Blencowe BJ, Cox J, Coon JJ. Global detection of human variants and isoforms by deep proteome sequencing. Nature Biotechnology. PMID 36959352 DOI: 10.1038/s41587-023-01714-x |
0.657 |
|
| 2023 |
Zhang Q, Linke V, Overmyer KA, Traeger LL, Kasahara K, Miller IJ, Manson DE, Polaske TJ, Kerby RL, Kemis JH, Trujillo EA, Reddy TR, Russell JD, Schueler KL, Stapleton DS, ... ... Coon JJ, et al. Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut. Nature Microbiology. PMID 36759753 DOI: 10.1038/s41564-023-01326-w |
0.769 |
|
| 2022 |
Rensvold JW, Shishkova E, Sverchkov Y, Miller IJ, Cetinkaya A, Pyle A, Manicki M, Brademan DR, Alanay Y, Raiman J, Jochem A, Hutchins PD, Peters SR, Linke V, Overmyer KA, ... ... Coon JJ, et al. Defining mitochondrial protein functions through deep multiomic profiling. Nature. PMID 35614220 DOI: 10.1038/s41586-022-04765-3 |
0.78 |
|
| 2022 |
Westphall MS, Lee KW, Salome AZ, Lodge JM, Grant T, Coon JJ. Three-dimensional structure determination of protein complexes using matrix-landing mass spectrometry. Nature Communications. 13: 2276. PMID 35478194 DOI: 10.1038/s41467-022-29964-4 |
0.337 |
|
| 2022 |
Zhang Z, Dubiak KM, Shishkova E, Huber PW, Coon JJ, Dovichi NJ. High-Throughput, Comprehensive Single-Cell Proteomic Analysis of Embryos at the 50-Cell Stage Using a Microplate-Based MICROFASP System. Analytical Chemistry. PMID 35143156 DOI: 10.1021/acs.analchem.1c04987 |
0.313 |
|
| 2022 |
Lee KW, Peters-Clarke TM, Mertz KL, McAlister GC, Syka JEP, Westphall MS, Coon JJ. Infrared Photoactivation Boosts Reporter Ion Yield in Isobaric Tagging. Analytical Chemistry. 94: 3328-3334. PMID 35142486 DOI: 10.1021/acs.analchem.1c05398 |
0.719 |
|
| 2022 |
Wen Z, Finn R, Gao X, Li L, Hebert A, Ranheim EA, Zhou Y, Yun G, Roose JP, Coon JJ, Shiang R, Wen R, Yu M, Wang D, Zhang J. Tcof1 haploinsufficiency promotes early T cell precursor-like leukemia in Nras mice. Leukemia. PMID 35082403 DOI: 10.1038/s41375-022-01510-7 |
0.543 |
|
| 2022 |
Trujillo EA, Hebert AS, Rivera Vazquez JC, Brademan DR, Tatli M, Amador-Noguez D, Meyer JG, Coon JJ. Rapid Targeted Quantitation of Protein Overexpression with Direct Infusion Shotgun Proteome Analysis (DISPA-PRM). Analytical Chemistry. PMID 35044165 DOI: 10.1021/acs.analchem.1c03243 |
0.657 |
|
| 2021 |
Peters-Clarke TM, Riley NM, Westphall MS, Coon JJ. Practical Effects of Intramolecular Hydrogen Rearrangement in Electron Transfer Dissociation-Based Proteomics. Journal of the American Society For Mass Spectrometry. PMID 34874726 DOI: 10.1021/jasms.1c00284 |
0.651 |
|
| 2021 |
Martien JI, Trujillo EA, Jacobson TB, Tatli M, Hebert AS, Stevenson DM, Coon JJ, Amador-Noguez D. Metabolic Remodeling during Nitrogen Fixation in Zymomonas mobilis. Msystems. e0098721. PMID 34783580 DOI: 10.1128/mSystems.00987-21 |
0.616 |
|
| 2021 |
Robinson KP, Jochem A, Johnson SE, Reddy TR, Russell JD, Coon JJ, Pagliarini DJ. Defining intermediates and redundancies in coenzyme Q precursor biosynthesis. The Journal of Biological Chemistry. 100643. PMID 33862086 DOI: 10.1016/j.jbc.2021.100643 |
0.538 |
|
| 2021 |
He Y, Rashan EH, Linke V, Shishkova E, Hebert AS, Jochem A, Westphall MS, Pagliarini DJ, Overmyer KA, Coon JJ. Multi-Omic Single-Shot Technology for Integrated Proteome and Lipidome Analysis. Analytical Chemistry. PMID 33617230 DOI: 10.1021/acs.analchem.0c04764 |
0.812 |
|
| 2021 |
Wen Z, Yun G, Hebert A, Kong G, Ranheim EA, Finn R, Rajagoplan A, Li S, Zhou Y, Yu M, Damnernsawad A, Roose J, Coon J, Wen R, Wang D, et al. NrasQ61R/+ and Kras-/- cooperate to downregulate Rasgrp1 and promote lympho-myeloid leukemia in early T-cell precursors. Blood. PMID 33512434 DOI: 10.1182/blood.2020009082 |
0.565 |
|
| 2021 |
Lee W, Kingstad-Bakke B, Paulson B, Larsen A, Overmyer K, Marinaik CB, Dulli K, Toy R, Vogel G, Mueller KP, Tweed K, Walsh AJ, Russell J, Saha K, Reyes L, ... ... Coon J, et al. Carbomer-based adjuvant elicits CD8 T-cell immunity by inducing a distinct metabolic state in cross-presenting dendritic cells. Plos Pathogens. 17: e1009168. PMID 33444400 DOI: 10.1371/journal.ppat.1009168 |
0.491 |
|
| 2020 |
Muehlbauer LK, Hebert AS, Westphall MS, Shishkova E, Coon JJ. Global Phosphoproteome Analysis Using High-Field Asymmetric Waveform Ion Mobility Spectrometry on a Hybrid Orbitrap Mass Spectrometer. Analytical Chemistry. PMID 33270415 DOI: 10.1021/acs.analchem.0c03415 |
0.673 |
|
| 2020 |
Meyer JG, Niemi NM, Pagliarini DJ, Coon JJ. Quantitative shotgun proteome analysis by direct infusion. Nature Methods. PMID 33230323 DOI: 10.1038/s41592-020-00999-z |
0.364 |
|
| 2020 |
Overmyer KA, Shishkova E, Miller IJ, Balnis J, Bernstein MN, Peters-Clarke TM, Meyer JG, Quan Q, Muehlbauer LK, Trujillo EA, He Y, Chopra A, Chieng HC, Tiwari A, Judson MA, ... ... Coon JJ, et al. Large-Scale Multi-omic Analysis of COVID-19 Severity. Cell Systems. PMID 33096026 DOI: 10.1016/j.cels.2020.10.003 |
0.795 |
|
| 2020 |
Buch-Larsen SC, Hendriks IA, Lodge JM, Rykær M, Furtwängler B, Shishkova E, Westphall MS, Coon JJ, Nielsen ML. Mapping Physiological ADP-Ribosylation Using Activated Ion Electron Transfer Dissociation. Cell Reports. 32: 108176. PMID 32966781 DOI: 10.1016/j.celrep.2020.108176 |
0.377 |
|
| 2020 |
Linke V, Overmyer KA, Miller IJ, Brademan DR, Hutchins PD, Trujillo EA, Reddy TR, Russell JD, Cushing EM, Schueler KL, Stapleton DS, Rabaglia ME, Keller MP, Gatti DM, Keele GR, ... ... Coon JJ, et al. A large-scale genome-lipid association map guides lipid identification. Nature Metabolism. PMID 32958938 DOI: 10.1038/s42255-020-00278-3 |
0.79 |
|
| 2020 |
Kurumbang NP, Vera JM, Hebert AS, Coon JJ, Landick R. Heterologous expression of a glycosyl hydrolase and cellular reprogramming enable Zymomonas mobilis growth on cellobiose. Plos One. 15: e0226235. PMID 32797046 DOI: 10.1371/Journal.Pone.0226235 |
0.613 |
|
| 2020 |
Peters-Clarke TM, Schauer KL, Riley NM, Lodge JM, Westphall MS, Coon JJ. Optical Fiber-Enabled Photoactivation of Peptides and Proteins. Analytical Chemistry. PMID 32786458 DOI: 10.1021/Acs.Analchem.0C02087 |
0.653 |
|
| 2020 |
Overmyer KA, Shishkova E, Miller IJ, Balnis J, Bernstein MN, Peters-Clarke TM, Meyer JG, Quan Q, Muehlbauer LK, Trujillo EA, He Y, Chopra A, Chieng HC, Tiwari A, Judson MA, ... ... Coon JJ, et al. Large-scale Multi-omic Analysis of COVID-19 Severity. Medrxiv : the Preprint Server For Health Sciences. PMID 32743614 DOI: 10.1101/2020.07.17.20156513 |
0.797 |
|
| 2020 |
Lodge JM, Schauer KL, Brademan DR, Riley NM, Shishkova E, Westphall MS, Coon JJ. Top-Down Characterization of an Intact Monoclonal Antibody using Activated Ion-Electron Transfer Dissociation. Analytical Chemistry. PMID 32608969 DOI: 10.1021/Acs.Analchem.0C00705 |
0.693 |
|
| 2020 |
Karlen SD, Fasahati P, Mazaheri M, Serate J, Smith RA, Sirobhushanam S, Chen M, Tymokhin VI, Cass CL, Liu S, Padmakshan D, Xie D, Zhang Y, McGee MA, Russell JD, ... Coon JJ, et al. Assessing the Viability of Recovery of Hydroxycinnamic Acids from Lignocellulosic Biorefinery Alkaline Pretreatment Waste Streams. Chemsuschem. PMID 32285625 DOI: 10.1002/Cssc.202000820 |
0.528 |
|
| 2020 |
Leung KK, Wilson GM, Kirkemo LL, Riley NM, Coon JJ, Wells JA. Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogenes. Proceedings of the National Academy of Sciences of the United States of America. PMID 32205440 DOI: 10.1073/Pnas.1917947117 |
0.64 |
|
| 2020 |
Peters-Clarke T, Quan Q, Brademan D, Hebert AS, Westphall M, Coon JJ. Ribonucleic acid sequence characterization by negative electron transfer dissociation mass spectrometry. Analytical Chemistry. PMID 32091202 DOI: 10.1021/Acs.Analchem.9B05388 |
0.696 |
|
| 2020 |
Johnson JM, Hebert AS, Drane QH, Lera RF, Wan J, Weaver BA, Coon JJ, Burkard ME. A Genetic Toggle for Chemical Control of Individual Plk1 Substrates. Cell Chemical Biology. PMID 32017920 DOI: 10.1016/J.Chembiol.2020.01.007 |
0.612 |
|
| 2020 |
Karlen SD, Fasahati P, Mazaheri M, Serate J, Smith RA, Sirobhushanam S, Chen M, Tymkhin VI, Cass CL, Liu S, Padmakshan D, Xie D, Zhang Y, McGee MA, Russell JD, ... Coon JJ, et al. Assessing the viability of recovering hydroxycinnamic acids from lignocellulosic biorefinery alkaline pretreatment waste streams. Chemsuschem. PMID 31984673 DOI: 10.1002/cssc.201903345 |
0.478 |
|
| 2020 |
Stefely JA, Zhang Y, Freiberger EC, Kwiecien NW, Thomas HE, Davis AM, Lowry ND, Vincent CE, Shishkova E, Clark NA, Medvedovic M, Coon JJ, Pagliarini DJ, Mercer CA. Mass spectrometry proteomics reveals a function for mammalian CALCOCO1 in MTOR-regulated selective autophagy. Autophagy. PMID 31971854 DOI: 10.1080/15548627.2020.1719746 |
0.349 |
|
| 2020 |
Karlen SD, Fasahati P, Mazaheri M, Serate J, Smith RA, Sirobhushanam S, Chen M, Tymokhin VI, Cass CL, Liu S, Padmakshan D, Xie D, Zhang Y, McGee MA, Russell JD, ... Coon JJ, et al. Front Cover: Assessing the Viability of Recovery of Hydroxycinnamic Acids from Lignocellulosic Biorefinery Alkaline Pretreatment Waste Streams (ChemSusChem 8/2020) Chemsuschem. 13: 1918-1918. DOI: 10.1002/Cssc.202000821 |
0.509 |
|
| 2019 |
McCool EN, Lodge JM, Basharat AR, Liu X, Coon JJ, Sun L. Capillary Zone Electrophoresis-Tandem Mass Spectrometry with Activated Ion Electron Transfer Dissociation for Large-scale Top-down Proteomics. Journal of the American Society For Mass Spectrometry. 30: 2470-2479. PMID 31944704 DOI: 10.1021/jasms.8b06269 |
0.427 |
|
| 2019 |
Zhang Y, Vera JM, Xie D, Serate J, Pohlmann E, Russell JD, Hebert AS, Coon JJ, Sato TK, Landick R. Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in . Frontiers in Microbiology. 10: 2596. PMID 31787963 DOI: 10.3389/Fmicb.2019.02596 |
0.712 |
|
| 2019 |
Tatli M, Hebert AS, Coon JJ, Amador-Noguez D. Genome Wide Phosphoproteome Analysis of Under Anaerobic, Aerobic, and N-Fixing Conditions. Frontiers in Microbiology. 10: 1986. PMID 31551951 DOI: 10.3389/Fmicb.2019.01986 |
0.664 |
|
| 2019 |
Trujillo EA, Hebert AS, Brademan DR, Coon JJ. Maximizing Tandem MS Acquisition Rates for Shotgun Proteomics. Analytical Chemistry. PMID 31509394 DOI: 10.1021/Acs.Analchem.9B02979 |
0.691 |
|
| 2019 |
Kemis JH, Linke V, Barrett KL, Boehm FJ, Traeger LL, Keller MP, Rabaglia ME, Schueler KL, Stapleton DS, Gatti DM, Churchill GA, Amador-Noguez D, Russell JD, Yandell BS, Broman KW, ... Coon JJ, et al. Genetic determinants of gut microbiota composition and bile acid profiles in mice. Plos Genetics. 15: e1008073. PMID 31465442 DOI: 10.1371/Journal.Pgen.1008073 |
0.771 |
|
| 2019 |
Niemi NM, Wilson GM, Overmyer KA, Vögtle FN, Myketin L, Lohman DC, Schueler KL, Attie AD, Meisinger C, Coon JJ, Pagliarini DJ. Pptc7 is an essential phosphatase for promoting mammalian mitochondrial metabolism and biogenesis. Nature Communications. 10: 3197. PMID 31324765 DOI: 10.1038/S41467-019-11047-6 |
0.308 |
|
| 2019 |
Hutchins PD, Russell JD, Coon JJ. Accelerating Lipidomic Method Development through in silico Simulation. Analytical Chemistry. PMID 31298839 DOI: 10.1021/Acs.Analchem.9B01234 |
0.606 |
|
| 2019 |
Zhang Z, Hebert AS, Westphall MS, Coon JJ, Dovichi NJ. Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry Produces Over 4400 Phosphopeptide Identifications from 220 ng Sample. Journal of Proteome Research. PMID 31180221 DOI: 10.1021/Acs.Jproteome.9B00244 |
0.691 |
|
| 2019 |
Wagner ER, Myers KS, Riley NM, Coon JJ, Gasch AP. PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production. Plos One. 14: e0212389. PMID 31112537 DOI: 10.1371/Journal.Pone.0212389 |
0.6 |
|
| 2019 |
Brademan DR, Riley NM, Kwiecien NW, Coon JJ. Interactive Peptide Spectral Annotator: A Versatile Web-Based Tool for Proteomic Applications. Molecular & Cellular Proteomics : McP. PMID 31088857 DOI: 10.1074/Mcp.Tir118.001209 |
0.684 |
|
| 2019 |
McCool EN, Lodge JM, Basharat AR, Liu X, Coon JJ, Sun L. Capillary Zone Electrophoresis-Tandem Mass Spectrometry with Activated Ion Electron Transfer Dissociation for Large-scale Top-down Proteomics. Journal of the American Society For Mass Spectrometry. PMID 31073891 DOI: 10.1007/S13361-019-02206-6 |
0.509 |
|
| 2019 |
Riley NM, Hebert AS, Westphall MS, Coon JJ. Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis. Nature Communications. 10: 1311. PMID 30899004 DOI: 10.1038/S41467-019-09222-W |
0.753 |
|
| 2019 |
Myers KS, Riley NM, MacGilvray ME, Sato TK, McGee M, Heilberger J, Coon JJ, Gasch AP. Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast. Plos Genetics. 15: e1008037. PMID 30856163 DOI: 10.1371/Journal.Pgen.1008037 |
0.612 |
|
| 2019 |
Denu RA, Sass MM, Johnson JM, Potts GK, Choudhary A, Coon JJ, Burkard ME. Polo-like kinase 4 maintains centriolar satellite integrity by phosphorylation of centrosomal protein 131 (CEP131). The Journal of Biological Chemistry. PMID 30804208 DOI: 10.1074/Jbc.Ra118.004867 |
0.316 |
|
| 2019 |
Martien JI, Hebert AS, Stevenson DM, Regner MR, Khana DB, Coon JJ, Amador-Noguez D. Systems-Level Analysis of Oxygen Exposure in : Implications for Isoprenoid Production. Msystems. 4. PMID 30801024 DOI: 10.1128/mSystems.00284-18 |
0.579 |
|
| 2019 |
Hutchins PD, Russell JD, Coon JJ. Mapping Lipid Fragmentation for Tailored Mass Spectral Libraries. Journal of the American Society For Mass Spectrometry. PMID 30756325 DOI: 10.1007/S13361-018-02125-Y |
0.596 |
|
| 2019 |
McKetney J, Runde R, Hebert AS, Salamat S, Roy S, Coon JJ. Proteomic atlas of the human brain in Alzheimer's disease. Journal of Proteome Research. PMID 30735395 DOI: 10.1021/Acs.Jproteome.9B00004 |
0.613 |
|
| 2019 |
Strekalova E, Malin D, Weisenhorn EMM, Russell JD, Hoelper D, Jain A, Coon JJ, Lewis PW, Cryns VL. S-adenosylmethionine biosynthesis is a targetable metabolic vulnerability of cancer stem cells. Breast Cancer Research and Treatment. PMID 30712196 DOI: 10.1007/S10549-019-05146-7 |
0.53 |
|
| 2019 |
Subramanian K, Jochem A, Le Vasseur M, Lewis S, Paulson BR, Reddy TR, Russell JD, Coon JJ, Pagliarini DJ, Nunnari J. Coenzyme Q biosynthetic proteins assemble in a substrate-dependent manner into domains at ER-mitochondria contacts. The Journal of Cell Biology. PMID 30674579 DOI: 10.1083/Jcb.201808044 |
0.551 |
|
| 2019 |
Lohman DC, Aydin D, Von Bank HC, Smith RW, Linke V, Weisenhorn E, McDevitt MT, Hutchins P, Wilkerson EM, Wancewicz B, Russell J, Stefely MS, Beebe ET, Jochem A, Coon JJ, et al. An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis. Molecular Cell. PMID 30661980 DOI: 10.1016/j.molcel.2018.11.033 |
0.773 |
|
| 2019 |
Marx H, Coon JJ. MS-Helios: a Circos wrapper to visualize multi-omic datasets. Bmc Bioinformatics. 20: 21. PMID 30634897 DOI: 10.1186/S12859-018-2564-9 |
0.387 |
|
| 2018 |
Ghosh IN, Martien J, Hebert AS, Zhang Y, Coon JJ, Amador-Noguez D, Landick R. OptSSeq explores enzyme expression and function landscapes to maximize isobutanol production rate. Metabolic Engineering. PMID 30594629 DOI: 10.1016/J.Ymben.2018.12.008 |
0.606 |
|
| 2018 |
Peuchen EH, Cox OF, Sun L, Hebert AS, Coon JJ, Champion MM, Dovichi NJ, Huber PW. Author Correction: Phosphorylation Dynamics Dominate the Regulated Proteome during Early Xenopus Development. Scientific Reports. 8: 17393. PMID 30459361 DOI: 10.1038/S41598-018-35442-Z |
0.597 |
|
| 2018 |
Wang Y, Weisenhorn E, MacDiarmid CW, Andreini C, Bucci M, Taggart J, Banci L, Russell J, Coon JJ, Eide DJ. The cellular economy of the Saccharomyces cerevisiae zinc proteome. Metallomics : Integrated Biometal Science. PMID 30358795 DOI: 10.1039/C8Mt00269J |
0.586 |
|
| 2018 |
Taggart J, Wang Y, Weisenhorn E, MacDiarmid CW, Russell J, Coon JJ, Eide DJ. The GIS2 Gene Is Repressed by a Zinc-Regulated Bicistronic RNA in Saccharomyces cerevisiae. Genes. 9. PMID 30235899 DOI: 10.3390/Genes9090462 |
0.531 |
|
| 2018 |
Zhang Z, Hebert A, Westphall M, Qu Y, Coon JJ, Dovichi NJ. Single Shot Capillary Zone Electrophoresis-Mass Spectrometry Produces Over 27,000 Peptide and Nearly 4,400 Protein Identifications by Combining a Very Low-Electroosmosis Coated Capillary, a Third-Generation Electrokinetically-Pumped Sheath-Flow Nanospray Interface, an Orbitrap Fusion Lumos Tribid Mass Spectrometer, and an Advanced Peak Determination Algorithm. Analytical Chemistry. PMID 30179504 DOI: 10.1021/Acs.Analchem.8B02991 |
0.709 |
|
| 2018 |
Shishkova E, Hebert AS, Westphall MS, Coon JJ. Ultra-High Pressure (>30,000 psi) Packing of Capillary Columns Enhancing Depth of Shotgun Proteomic Analyses. Analytical Chemistry. PMID 30179449 DOI: 10.1021/Acs.Analchem.8B02766 |
0.648 |
|
| 2018 |
Hebert AS, Prasad S, Belford MW, Bailey DJ, McAlister GC, Abbatiello SE, Huguet R, Wouters ER, Dunyach JJ, Brademan DR, Westphall MS, Coon JJ. Rapid and Comprehensive Single Shot Proteomics with LC-FAIMS-MS/MS. Analytical Chemistry. PMID 29969236 DOI: 10.1021/Acs.Analchem.8B02233 |
0.834 |
|
| 2018 |
Rush MJP, Riley NM, Westphall MS, Coon JJ. Top-Down Characterization of Proteins with Intact Disulfide Bonds Using Activated-Ion Electron Transfer Dissociation. Analytical Chemistry. PMID 29949341 DOI: 10.1021/Acs.Analchem.8B01113 |
0.678 |
|
| 2018 |
Riley NM, Sikora JW, Seckler HS, Greer JB, Fellers RT, LeDuc RD, Westphall MS, Thomas PM, Kelleher NL, Coon JJ. The Value of Activated Ion Electron Transfer Dissociation for High-Throughput Top-Down Characterization of Intact Proteins. Analytical Chemistry. PMID 29924586 DOI: 10.1021/Acs.Analchem.8B01638 |
0.716 |
|
| 2018 |
Yang S, Vera JM, Grass J, Savvakis G, Moskvin OV, Yang Y, McIlwain SJ, Lyu Y, Zinonos I, Hebert AS, Coon JJ, Bates DM, Sato TK, Brown SD, Himmel ME, et al. Complete genome sequence and the expression pattern of plasmids of the model ethanologen ZM4 and its xylose-utilizing derivatives 8b and 2032. Biotechnology For Biofuels. 11: 125. PMID 29743953 DOI: 10.1186/S13068-018-1116-X |
0.597 |
|
| 2018 |
Esnault S, Hebert AS, Jarjour NN, Coon JJ, Mosher DF. Proteomic and Phospho-proteomic Changes Induced by Prolonged Activation of Human Eosinophils with IL-3. Journal of Proteome Research. PMID 29706072 DOI: 10.1021/Acs.Jproteome.8B00057 |
0.647 |
|
| 2018 |
Hutchins PD, Russell JD, Coon JJ. LipiDex: An Integrated Software Package for High-Confidence Lipid Identification. Cell Systems. PMID 29705063 DOI: 10.1016/J.Cels.2018.03.011 |
0.625 |
|
| 2018 |
Turton KB, Wilkerson EM, Hebert AS, Fogerty FJ, Schira HM, Botros FE, Coon JJ, Mosher DF. Expression of novel "LOCGEF" isoforms of ARHGEF18 in eosinophils. Journal of Leukocyte Biology. PMID 29601110 DOI: 10.1002/Jlb.2Ma1017-418Rr |
0.603 |
|
| 2018 |
Mitok KA, Freiberger EC, Schueler KL, Rabaglia ME, Stapleton DS, Kwiecien NW, Malec PA, Hebert AS, Broman AT, Kennedy RT, Keller MP, Coon JJ, Attie AD. Islet proteomics reveals genetic variation in dopamine production resulting in altered insulin secretion. The Journal of Biological Chemistry. PMID 29496998 DOI: 10.1074/Jbc.Ra117.001102 |
0.613 |
|
| 2018 |
Bottoms S, Dickinson Q, McGee M, Hinchman L, Higbee A, Hebert A, Serate J, Xie D, Zhang Y, Coon JJ, Myers CL, Landick R, Piotrowski JS. Chemical genomic guided engineering of gamma-valerolactone tolerant yeast. Microbial Cell Factories. 17: 5. PMID 29329531 DOI: 10.1186/S12934-017-0848-9 |
0.62 |
|
| 2018 |
Overmyer KA, Tyanova S, Hebert AS, Westphall MS, Cox J, Coon JJ. Multiplexed proteome analysis with neutron-encoded stable isotope labeling in cells and mice. Nature Protocols. 13: 293-306. PMID 29323663 DOI: 10.1038/Nprot.2017.121 |
0.713 |
|
| 2018 |
Bucci MD, Weisenhorn E, Haws S, Yao Z, Zimmerman G, Gannon M, Taggart J, Lee T, Klionsky DJ, Russell J, Coon J, Eide DJ. An Autophagy-Independent Role for ATG41 in Sulfur Metabolism During Zinc Deficiency. Genetics. PMID 29321173 DOI: 10.1534/Genetics.117.300679 |
0.537 |
|
| 2017 |
Hebert AS, Thoeing C, Riley NM, Kwiecien NW, Shiskova E, Huguet R, Cardasis HL, Kuehn A, Eliuk S, Zabrouskov V, Westphall MS, McAlister GC, Coon JJ. Improved Precursor Characterization for Data-Dependent Mass Spectrometry. Analytical Chemistry. PMID 29272103 DOI: 10.1021/Acs.Analchem.7B04808 |
0.832 |
|
| 2017 |
Lapointe CP, Stefely JA, Jochem A, Hutchins PD, Wilson GM, Kwiecien NW, Coon JJ, Wickens M, Pagliarini DJ. Multi-omics Reveal Specific Targets of the RNA-Binding Protein Puf3p and Its Orchestration of Mitochondrial Biogenesis. Cell Systems. PMID 29248374 DOI: 10.1016/J.Cels.2017.11.012 |
0.316 |
|
| 2017 |
Veling MT, Reidenbach AG, Freiberger EC, Kwiecien NW, Hutchins PD, Drahnak MJ, Jochem A, Ulbrich A, Rush MJP, Russell JD, Coon JJ, Pagliarini DJ. Multi-omic Mitoprotease Profiling Defines a Role for Oct1p in Coenzyme Q Production. Molecular Cell. 68: 970-977.e11. PMID 29220658 DOI: 10.1016/J.Molcel.2017.11.023 |
0.555 |
|
| 2017 |
Vakirlis NN, Hebert AS, Opulente DA, Achaz G, Hittinger CT, Fischer G, Coon JJ, Lafontaine I. A molecular portrait of de novo genes in yeasts. Molecular Biology and Evolution. PMID 29220506 DOI: 10.1093/Molbev/Msx315 |
0.619 |
|
| 2017 |
Reidenbach AG, Kemmerer ZA, Aydin D, Jochem A, McDevitt MT, Hutchins PD, Stark JL, Stefely JA, Reddy T, Hebert AS, Wilkerson EM, Johnson IE, Bingman CA, Markley JL, Coon JJ, et al. Conserved Lipid and Small-Molecule Modulation of COQ8 Reveals Regulation of the Ancient Kinase-like UbiB Family. Cell Chemical Biology. PMID 29198567 DOI: 10.1016/J.Chembiol.2017.11.001 |
0.631 |
|
| 2017 |
Riley NM, Coon JJ. The Role of Electron Transfer Dissociation in Modern Proteomics. Analytical Chemistry. PMID 29172454 DOI: 10.1021/Acs.Analchem.7B04810 |
0.683 |
|
| 2017 |
Peuchen EH, Cox OF, Sun L, Hebert AS, Coon JJ, Champion MM, Dovichi NJ, Huber PW. Phosphorylation Dynamics Dominate the Regulated Proteome during Early Xenopus Development. Scientific Reports. 7: 15647. PMID 29142207 DOI: 10.1038/S41598-017-15936-Y |
0.644 |
|
| 2017 |
Mosher DF, Wilkerson EM, Turton KB, Hebert AS, Coon JJ. Proteomics of Eosinophil Activation. Frontiers in Medicine. 4: 159. PMID 29034237 DOI: 10.3389/Fmed.2017.00159 |
0.679 |
|
| 2017 |
Riley NM, Westphall MS, Coon JJ. Sequencing Larger Intact Proteins (30-70 kDa) with Activated Ion Electron Transfer Dissociation. Journal of the American Society For Mass Spectrometry. PMID 29027149 DOI: 10.1007/S13361-017-1808-7 |
0.717 |
|
| 2017 |
Shishkova E, Kwiecien NW, Hebert AS, Westphall MS, Prenni JE, Coon JJ. Gender Diversity in a STEM Subfield - Analysis of a Large Scientific Society and Its Annual Conferences. Journal of the American Society For Mass Spectrometry. PMID 28952050 DOI: 10.1007/S13361-017-1803-Z |
0.587 |
|
| 2017 |
Diaz JE, Morgan CW, Minogue CE, Hebert AS, Coon JJ, Wells JA. A Split-Abl Kinase for Direct Activation in Cells. Cell Chemical Biology. PMID 28919041 DOI: 10.1016/J.Chembiol.2017.08.007 |
0.625 |
|
| 2017 |
Hewitt KJ, Katsumura KR, Matson DR, Devadas P, Tanimura N, Hebert AS, Coon JJ, Kim JS, Dewey CN, Keles S, Hao S, Paulson RF, Bresnick EH. GATA Factor-Regulated Samd14 Enhancer Confers Red Blood Cell Regeneration and Survival in Severe Anemia. Developmental Cell. 42: 213-225.e4. PMID 28787589 DOI: 10.1016/J.Devcel.2017.07.009 |
0.613 |
|
| 2017 |
Riley NM, Westphall MS, Coon JJ. Activated Ion Electron Transfer Dissociation Enables Comprehen-sive Top-Down Protein Fragmentation. Journal of Proteome Research. PMID 28608681 DOI: 10.1021/Acs.Jproteome.7B00249 |
0.682 |
|
| 2017 |
Leach FE, Riley NM, Westphall MS, Coon JJ, Amster IJ. Negative Electron Transfer Dissociation Sequencing of Increasingly Sulfated Glycosaminoglycan Oligosaccharides on an Orbitrap Mass Spectrometer. Journal of the American Society For Mass Spectrometry. PMID 28589488 DOI: 10.1007/S13361-017-1709-9 |
0.711 |
|
| 2017 |
Chung J, Wittig JG, Ghamari A, Maeda M, Dailey TA, Bergonia H, Kafina MD, Coughlin EE, Minogue CE, Hebert AS, Li L, Kaplan J, Lodish HF, Bauer DE, Orkin SH, ... ... Coon JJ, et al. Erythropoietin signaling regulates heme biosynthesis. Elife. 6. PMID 28553927 DOI: 10.7554/Elife.24767 |
0.628 |
|
| 2017 |
Potts GK, McNally RM, Blanco R, You JS, Hebert AS, Westphall MS, Coon JJ, Hornberger TA. A map of the phosphoproteomic alterations that occur after a bout of maximal-intensity contractions. The Journal of Physiology. PMID 28542873 DOI: 10.1113/Jp273904 |
0.64 |
|
| 2017 |
Guo X, Niemi NM, Coon JJ, Pagliarini DJ. Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase. The Journal of Biological Chemistry. PMID 28539364 DOI: 10.1074/Jbc.M117.787341 |
0.34 |
|
| 2017 |
Shishkova E, Zeng H, Liu F, Kwiecien NW, Hebert AS, Coon JJ, Xu W. Global mapping of CARM1 substrates defines enzyme specificity and substrate recognition. Nature Communications. 8: 15571. PMID 28537268 DOI: 10.1038/Ncomms15571 |
0.629 |
|
| 2017 |
Riley NM, Hebert AS, Dürnberger G, Stanek F, Mechtler K, Westphall MS, Coon JJ. Phosphoproteomics with Activated Ion Electron Transfer Dissociation. Analytical Chemistry. PMID 28383256 DOI: 10.1021/Acs.Analchem.7B00212 |
0.803 |
|
| 2017 |
Riley NM, Westphall MS, Hebert AS, Coon JJ. Implementation of Activated Ion Electron Transfer Dissociation on a quadrupole-Orbitrap-linear ion trap hybrid mass spectrometer. Analytical Chemistry. PMID 28383247 DOI: 10.1021/Acs.Analchem.7B00213 |
0.809 |
|
| 2017 |
Rush MJ, Riley NM, Westphall MS, Syka JE, Coon JJ. Sulfur Pentafluoride is a Preferred Reagent Cation for Negative Electron Transfer Dissociation. Journal of the American Society For Mass Spectrometry. PMID 28349437 DOI: 10.1007/S13361-017-1600-8 |
0.83 |
|
| 2017 |
Guo X, Niemi NM, Hutchins PD, Condon SG, Jochem A, Ulbrich A, Higbee AJ, Russell JD, Senes A, Coon JJ, Pagliarini DJ. Ptc7p Dephosphorylates Select Mitochondrial Proteins to Enhance Metabolic Function. Cell Reports. 18: 307-313. PMID 28076776 DOI: 10.1016/J.Celrep.2016.12.049 |
0.568 |
|
| 2017 |
Chung J, Wittig JG, Ghamari A, Maeda M, Dailey TA, Bergonia H, Kafina MD, Coughlin EE, Minogue CE, Hebert AS, Li L, Kaplan J, Lodish HF, Bauer DE, Orkin SH, ... ... Coon JJ, et al. Author response: Erythropoietin signaling regulates heme biosynthesis Elife. DOI: 10.7554/Elife.24767.018 |
0.585 |
|
| 2017 |
Darst BF, Rush MJ, Hutchins PD, Reddy TR, Russell JD, Gangnon R, Koscik RL, Asthana S, Johnson SC, Hogan KJ, Coon JJ, Engelman CD. PRELIMINARY FINDINGS FROM AN ONGOING LONGITUDINAL METABOLOME-WIDE ASSOCIATION STUDY OF COGNITIVE DECLINE IN HEALTHY ADULTS WITH INCREASED RISK FOR ALZHEIMER’S DISEASE Alzheimer's & Dementia. 13: P551-P552. DOI: 10.1016/J.Jalz.2017.07.149 |
0.503 |
|
| 2017 |
Bresnick E, Hewitt K, Mehta C, Johnson K, Matson D, Katsumura K, Gao X, McIver S, Devadas P, Hebert A, Coon J, Kim J, Ong I, Ranheim E, Dewey C, et al. Enhancer mechanisms governing developmental and regenerative hematopoietic programs Experimental Hematology. 53: S28. DOI: 10.1016/J.Exphem.2017.06.018 |
0.573 |
|
| 2016 |
Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Narasimhan RA, McGee MA, Dickinson Q, La Reau A, Xie D, ... ... Coon JJ, et al. Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006447. PMID 27828955 DOI: 10.1371/journal.pgen.1006447 |
0.559 |
|
| 2016 |
Shishkova E, Hebert AS, Coon JJ. Now, More Than Ever, Proteomics Needs Better Chromatography. Cell Systems. 3: 321-324. PMID 27788355 DOI: 10.1016/J.Cels.2016.10.007 |
0.68 |
|
| 2016 |
Weisenhorn EM, Van't Erve TJ, Riley NM, Hess JR, Raife TJ, Coon JJ. Multi-omics evidence for inheritance of energy pathways in red blood cells. Molecular & Cellular Proteomics : McP. PMID 27777340 DOI: 10.1074/mcp.M116.062349 |
0.604 |
|
| 2016 |
Marx H, Minogue CE, Jayaraman D, Richards AL, Kwiecien NW, Sihapirani AF, Rajasekar S, Maeda J, Garcia K, Del Valle-Echevarria AR, Volkening JD, Westphall MS, Roy S, Sussman MR, Ané JM, ... Coon JJ, et al. A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti. Nature Biotechnology. PMID 27748755 DOI: 10.1038/Nbt.3681 |
0.336 |
|
| 2016 |
Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Avanasi Narasimhan R, McGee MA, Dickinson Q, La Reau A, Xie D, ... ... Coon JJ, et al. Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006372. PMID 27741250 DOI: 10.1371/Journal.Pgen.1006372 |
0.629 |
|
| 2016 |
Kuang MC, Hutchins PD, Russell JD, Coon JJ, Hittinger CT. Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network. Elife. 5. PMID 27690225 DOI: 10.7554/Elife.19027 |
0.543 |
|
| 2016 |
Stefely JA, Kwiecien NW, Freiberger EC, Richards AL, Jochem A, Rush MJ, Ulbrich A, Robinson KP, Hutchins PD, Veling MT, Guo X, Kemmerer ZA, Connors KJ, Trujillo EA, Sokol J, ... ... Coon JJ, et al. Mitochondrial protein functions elucidated by multi-omic mass spectrometry profiling. Nature Biotechnology. PMID 27669165 DOI: 10.1038/Nbt.3683 |
0.656 |
|
| 2016 |
Floyd BJ, Wilkerson EM, Veling MT, Minogue CE, Xia C, Beebe ET, Wrobel RL, Cho H, Kremer LS, Alston CL, Gromek KA, Dolan BK, Ulbrich A, Stefely JA, Bohl SL, ... ... Coon JJ, et al. Mitochondrial Protein Interaction Mapping Identifies Regulators of Respiratory Chain Function. Molecular Cell. PMID 27499296 DOI: 10.1016/J.Molcel.2016.06.033 |
0.341 |
|
| 2016 |
Stefely JA, Licitra F, Laredj L, Reidenbach AG, Kemmerer ZA, Grangeray A, Jaeg-Ehret T, Minogue CE, Ulbrich A, Hutchins PD, Wilkerson EM, Ruan Z, Aydin D, Hebert AS, Guo X, ... ... Coon JJ, et al. Cerebellar Ataxia and Coenzyme Q Deficiency through Loss of Unorthodox Kinase Activity. Molecular Cell. PMID 27499294 DOI: 10.1016/J.Molcel.2016.06.030 |
0.634 |
|
| 2016 |
Xue L, Blythe EE, Freiberger EC, Mamrosh J, Hebert AS, Reitsma JM, Hess S, Coon JJ, Deshaies RJ. VCP-adaptor interactions are exceptionally dynamic and subject to differential modulation by a VCP inhibitor. Molecular & Cellular Proteomics : McP. PMID 27406709 DOI: 10.1074/Mcp.M116.061036 |
0.637 |
|
| 2016 |
Riley NM, Bern M, Westphall MS, Coon JJ. A full-featured search algorithm for negative electron transfer dissociation. Journal of Proteome Research. PMID 27402189 DOI: 10.1021/Acs.Jproteome.6B00319 |
0.695 |
|
| 2016 |
Baughman JM, Rose CM, Kolumam G, Webster JD, Wilkerson EM, Merrill AE, Rhoads TW, Noubade R, Katavolos P, Lesch J, Stapleton DS, Rabaglia ME, Schueler KL, Asuncion R, Domeyer M, ... ... Coon JJ, et al. NeuCode Proteomics Reveals Bap1 Regulation of Metabolism. Cell Reports. 16: 583-595. PMID 27373151 DOI: 10.1016/J.Celrep.2016.05.096 |
0.633 |
|
| 2016 |
McIlwain SJ, Peris D, Sardi M, Moskvin OV, Zhan F, Myers KS, Riley NM, Buzzell A, Parreiras LS, Ong IM, Landick R, Coon JJ, Gasch AP, Sato TK, Hittinger CT. Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research. G3 (Bethesda, Md.). 6: 1757-66. PMID 27172212 DOI: 10.1534/G3.116.029389 |
0.591 |
|
| 2016 |
Riley NM, Hebert AS, Coon JJ. Proteomics Moves into the Fast Lane. Cell Systems. 2: 142-143. PMID 27135360 DOI: 10.1016/J.Cels.2016.03.002 |
0.781 |
|
| 2016 |
Wilkerson EM, Johansson MW, Hebert AS, Westphall MS, Mathur SK, Jarjour NN, Schwantes EA, Mosher D, Coon JJ. The peripheral blood eosinophil proteome. Journal of Proteome Research. PMID 27005946 DOI: 10.1021/Acs.Jproteome.6B00006 |
0.681 |
|
| 2016 |
Horton JL, Martin OJ, Lai L, Riley NM, Richards AL, Vega RB, Leone TC, Pagliarini DJ, Muoio DM, Bedi KC, Margulies KB, Coon JJ, Kelly DP. Mitochondrial protein hyperacetylation in the failing heart. Jci Insight. 2. PMID 26998524 DOI: 10.1172/Jci.Insight.84897 |
0.593 |
|
| 2016 |
Potts GK, Voigt EA, Bailey DJ, Rose CM, Westphall MS, Hebert AS, Yin J, Coon JJ. NEUCODE LABELS FOR MULTIPLEXED, ABSOLUTE PROTEIN QUANTIFICATION. Analytical Chemistry. PMID 26882330 DOI: 10.1021/Acs.Analchem.5B04773 |
0.774 |
|
| 2016 |
Dickinson Q, Bottoms S, Hinchman L, McIlwain S, Li S, Myers CL, Boone C, Coon JJ, Hebert A, Sato TK, Landick R, Piotrowski JS. Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain. Microbial Cell Factories. 15: 17. PMID 26790958 DOI: 10.1186/S12934-016-0417-7 |
0.599 |
|
| 2016 |
Kuang MC, Hutchins PD, Russell JD, Coon JJ, Hittinger CT. Author response: Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network Elife. DOI: 10.7554/Elife.19027.028 |
0.524 |
|
| 2016 |
Wilkerson EM, Bates B, Kumfer KT, Riley NM, Schwartz BS, Coon JJ. Novel Sites of Gamma Carboxylation in Human Factor VII Blood. 128: 3759-3759. DOI: 10.1182/Blood.V128.22.3759.3759 |
0.447 |
|
| 2015 |
Riley NM, Mullen C, Weisbrod CR, Sharma S, Senko MW, Zabrouskov V, Westphall MS, Syka JE, Coon JJ. Enhanced Dissociation of Intact Proteins with High Capacity Electron Transfer Dissociation. Journal of the American Society For Mass Spectrometry. PMID 26589699 DOI: 10.1007/S13361-015-1306-8 |
0.833 |
|
| 2015 |
Riley NM, Coon JJ. Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling. Analytical Chemistry. PMID 26539879 DOI: 10.1021/Acs.Analchem.5B04123 |
0.594 |
|
| 2015 |
Rhoads TW, Prasad A, Kwiecien NW, Merrill AE, Zawack K, Westphall MS, Schroeder FC, Kimble J, Coon JJ. NeuCode Labeling in Nematodes: Proteomic and Phosphoproteomic Impact of Ascaroside Treatment in Caenorhabditis elegans. Molecular & Cellular Proteomics : McP. 14: 2922-35. PMID 26392051 DOI: 10.1074/Mcp.M115.049684 |
0.353 |
|
| 2015 |
Huang M, Hebert AS, Coon JJ, Hull CM. Protein Composition of Infectious Spores Reveals Novel Sexual Development and Germination Factors in Cryptococcus. Plos Genetics. 11: e1005490. PMID 26313153 DOI: 10.1371/Journal.Pgen.1005490 |
0.647 |
|
| 2015 |
Riley NM, Rush MJ, Rose CM, Richards AL, Kwiecien NW, Bailey DJ, Hebert AS, Westphall MS, Coon JJ. The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD). Molecular & Cellular Proteomics : McP. 14: 2644-60. PMID 26193884 DOI: 10.1074/Mcp.M115.049726 |
0.829 |
|
| 2015 |
Kwiecien NW, Bailey DJ, Rush MJ, Cole JS, Ulbrich A, Hebert AS, Westphall MS, Coon JJ. High-Resolution Filtering for Improved Small Molecule Identification via GC/MS. Analytical Chemistry. 87: 8328-35. PMID 26192401 DOI: 10.1021/Acs.Analchem.5B01503 |
0.771 |
|
| 2015 |
Rose CM, Rush MJ, Riley NM, Merrill AE, Kwiecien NW, Holden DD, Mullen C, Westphall MS, Coon JJ. A Calibration Routine for Efficient ETD in Large-Scale Proteomics. Journal of the American Society For Mass Spectrometry. PMID 26111518 DOI: 10.1007/S13361-015-1183-1 |
0.672 |
|
| 2015 |
Tagliabracci VS, Wiley SE, Guo X, Kinch LN, Durrant E, Wen J, Xiao J, Cui J, Nguyen KB, Engel JL, Coon JJ, Grishin N, Pinna LA, Pagliarini DJ, Dixon JE. A Single Kinase Generates the Majority of the Secreted Phosphoproteome. Cell. 161: 1619-32. PMID 26091039 DOI: 10.1016/J.Cell.2015.05.028 |
0.323 |
|
| 2015 |
Riley NM, Westphall MS, Coon JJ. Activated Ion Electron Transfer Dissociation for Improved Fragmentation of Intact Proteins. Analytical Chemistry. PMID 26067513 DOI: 10.1021/Acs.Analchem.5B00881 |
0.691 |
|
| 2015 |
Nguyen HT, Shaffer CJ, Ledvina AR, Coon JJ, Ture?ek F. Serine effects on collision-induced dissociation and photodissociation of peptide cation radicals of the z (+•) -type. International Journal of Mass Spectrometry. 378: 20-30. PMID 26005367 DOI: 10.1016/J.Ijms.2014.06.028 |
0.76 |
|
| 2015 |
Zhao Y, Riley NM, Sun L, Hebert AS, Yan X, Westphall MS, Rush MJ, Zhu G, Champion MM, Mba Medie F, Champion PA, Coon JJ, Dovichi NJ. Coupling capillary zone electrophoresis with electron transfer dissociation and activated ion electron transfer dissociation for top-down proteomics. Analytical Chemistry. 87: 5422-9. PMID 25893372 DOI: 10.1021/Acs.Analchem.5B00883 |
0.788 |
|
| 2015 |
Richards AL, Hebert AS, Ulbrich A, Bailey DJ, Coughlin EE, Westphall MS, Coon JJ. One-hour proteome analysis in yeast. Nature Protocols. 10: 701-14. PMID 25855955 DOI: 10.1038/Nprot.2015.040 |
0.773 |
|
| 2015 |
Ledvina AR, Coon JJ, Ture?ek F. Competitive Hydrogen Atom Migrations Accompanying Cascade Dissociations of Peptide Cation-Radicals of the z (+•) Type. International Journal of Mass Spectrometry. 377: 44-53. PMID 25844055 DOI: 10.1016/J.Ijms.2014.02.015 |
0.759 |
|
| 2015 |
Minogue CE, Hebert AS, Rensvold JW, Westphall MS, Pagliarini DJ, Coon JJ. Multiplexed quantification for data-independent acquisition. Analytical Chemistry. 87: 2570-5. PMID 25621425 DOI: 10.1021/Ac503593D |
0.684 |
|
| 2015 |
Stefely JA, Reidenbach AG, Ulbrich A, Oruganty K, Floyd BJ, Jochem A, Saunders JM, Johnson IE, Minogue CE, Wrobel RL, Barber GE, Lee D, Li S, Kannan N, Coon JJ, et al. Mitochondrial ADCK3 employs an atypical protein kinase-like fold to enable coenzyme Q biosynthesis. Molecular Cell. 57: 83-94. PMID 25498144 DOI: 10.1016/J.Molcel.2014.11.002 |
0.324 |
|
| 2015 |
Richards AL, Merrill AE, Coon JJ. Proteome sequencing goes deep. Current Opinion in Chemical Biology. 24: 11-7. PMID 25461719 DOI: 10.1016/J.Cbpa.2014.10.017 |
0.403 |
|
| 2015 |
Chung J, Wittig JG, Bauer DE, Coon JJ, Pagliarini DJ, Dailey HA, Lodish HF, Paw BH. Mitochondrial Protein Kinase A Regulates Heme Biosynthesis Blood. 126: 271-271. DOI: 10.1182/Blood.V126.23.271.271 |
0.329 |
|
| 2014 |
Brumbaugh J, Russell JD, Yu P, Westphall MS, Coon JJ, Thomson JA. NANOG Is Multiply Phosphorylated and Directly Modified by ERK2 and CDK1 In Vitro. Stem Cell Reports. 2: 18-25. PMID 28039751 DOI: 10.1016/j.stemcr.2013.12.005 |
0.685 |
|
| 2014 |
Chasman D, Ho YH, Berry DB, Nemec CM, MacGilvray ME, Hose J, Merrill AE, Lee MV, Will JL, Coon JJ, Ansari AZ, Craven M, Gasch AP. Pathway connectivity and signaling coordination in the yeast stress-activated signaling network. Molecular Systems Biology. 10: 759. PMID 25411400 DOI: 10.15252/Msb.20145120 |
0.614 |
|
| 2014 |
Sun L, Hebert AS, Yan X, Zhao Y, Westphall MS, Rush MJ, Zhu G, Champion MM, Coon JJ, Dovichi NJ. Over 10,000 peptide identifications from the HeLa proteome by using single-shot capillary zone electrophoresis combined with tandem mass spectrometry. Angewandte Chemie (International Ed. in English). 53: 13931-3. PMID 25346227 DOI: 10.1002/Anie.201409075 |
0.705 |
|
| 2014 |
Lohman DC, Forouhar F, Beebe ET, Stefely MS, Minogue CE, Ulbrich A, Stefely JA, Sukumar S, Luna-Sánchez M, Jochem A, Lew S, Seetharaman J, Xiao R, Wang H, Westphall MS, ... ... Coon JJ, et al. Mitochondrial COQ9 is a lipid-binding protein that associates with COQ7 to enable coenzyme Q biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 111: E4697-705. PMID 25339443 DOI: 10.1073/Pnas.1413128111 |
0.316 |
|
| 2014 |
Peterson AC, Hauschild JP, Quarmby ST, Krumwiede D, Lange O, Lemke RA, Grosse-Coosmann F, Horning S, Donohue TJ, Westphall MS, Coon JJ, Griep-Raming J. Development of a GC/Quadrupole-Orbitrap mass spectrometer, part I: design and characterization. Analytical Chemistry. 86: 10036-43. PMID 25208235 DOI: 10.1021/Ac5014767 |
0.64 |
|
| 2014 |
Peterson AC, Balloon AJ, Westphall MS, Coon JJ. Development of a GC/Quadrupole-Orbitrap mass spectrometer, part II: new approaches for discovery metabolomics. Analytical Chemistry. 86: 10044-51. PMID 25166283 DOI: 10.1021/Ac5014755 |
0.672 |
|
| 2014 |
Lemke RA, Peterson AC, Ziegelhoffer EC, Westphall MS, Tjellström H, Coon JJ, Donohue TJ. Synthesis and scavenging role of furan fatty acids. Proceedings of the National Academy of Sciences of the United States of America. 111: E3450-7. PMID 25092314 DOI: 10.1073/Pnas.1405520111 |
0.553 |
|
| 2014 |
Bhatnagar S, Soni MS, Wrighton LS, Hebert AS, Zhou AS, Paul PK, Gregg T, Rabaglia ME, Keller MP, Coon JJ, Attie AD. Phosphorylation and degradation of tomosyn-2 de-represses insulin secretion. The Journal of Biological Chemistry. 289: 25276-86. PMID 25002582 DOI: 10.1074/Jbc.M114.575985 |
0.631 |
|
| 2014 |
Merrill AE, Hebert AS, MacGilvray ME, Rose CM, Bailey DJ, Bradley JC, Wood WW, El Masri M, Westphall MS, Gasch AP, Coon JJ. NeuCode labels for relative protein quantification. Molecular & Cellular Proteomics : McP. 13: 2503-12. PMID 24938287 DOI: 10.1074/Mcp.M114.040287 |
0.777 |
|
| 2014 |
Ulbrich A, Bailey DJ, Westphall MS, Coon JJ. Organic acid quantitation by NeuCode methylamidation. Analytical Chemistry. 86: 4402-8. PMID 24684282 DOI: 10.1021/Ac500270Q |
0.621 |
|
| 2014 |
Brumbaugh J, Russell JD, Yu P, Westphall MS, Coon JJ, Thomson JA. NANOG is multiply phosphorylated and directly modified by ERK2 and CDK1 in vitro. Stem Cell Reports. 2: 18-25. PMID 24678451 DOI: 10.1016/J.Stemcr.2013.12.005 |
0.702 |
|
| 2014 |
Bailey DJ, McDevitt MT, Westphall MS, Pagliarini DJ, Coon JJ. Intelligent data acquisition blends targeted and discovery methods. Journal of Proteome Research. 13: 2152-61. PMID 24611583 DOI: 10.1021/Pr401278J |
0.65 |
|
| 2014 |
Dingley SD, Polyak E, Ostrovsky J, Srinivasan S, Lee I, Rosenfeld AB, Tsukikawa M, Xiao R, Selak MA, Coon JJ, Hebert AS, Grimsrud PA, Kwon YJ, Pagliarini DJ, Gai X, et al. Mitochondrial DNA variant in COX1 subunit significantly alters energy metabolism of geographically divergent wild isolates in Caenorhabditis elegans. Journal of Molecular Biology. 426: 2199-216. PMID 24534730 DOI: 10.1016/J.Jmb.2014.02.009 |
0.611 |
|
| 2014 |
Rhoads TW, Rose CM, Bailey DJ, Riley NM, Molden RC, Nestler AJ, Merrill AE, Smith LM, Hebert AS, Westphall MS, Pagliarini DJ, Garcia BA, Coon JJ. Neutron-encoded mass signatures for quantitative top-down proteomics. Analytical Chemistry. 86: 2314-9. PMID 24475910 DOI: 10.1021/Ac403579S |
0.822 |
|
| 2014 |
Honarpour N, Rose CM, Brumbaugh J, Anderson J, Graham RL, Sweredoski MJ, Hess S, Coon JJ, Deshaies RJ. F-box protein FBXL16 binds PP2A-B55α and regulates differentiation of embryonic stem cells along the FLK1+ lineage. Molecular & Cellular Proteomics : McP. 13: 780-91. PMID 24390425 DOI: 10.1074/Mcp.M113.031765 |
0.606 |
|
| 2014 |
Ulbrich A, Merrill AE, Hebert AS, Westphall MS, Keller MP, Attie AD, Coon JJ. Neutron-encoded protein quantification by peptide carbamylation. Journal of the American Society For Mass Spectrometry. 25: 6-9. PMID 24178922 DOI: 10.1007/S13361-013-0765-Z |
0.66 |
|
| 2014 |
Hebert AS, Richards AL, Bailey DJ, Ulbrich A, Coughlin EE, Westphall MS, Coon JJ. The one hour yeast proteome. Molecular & Cellular Proteomics : McP. 13: 339-47. PMID 24143002 DOI: 10.1074/Mcp.M113.034769 |
0.797 |
|
| 2014 |
Wilkerson EM, Johansson MW, Hebert AS, Westphall MS, Mosher DF, Coon JJ. Comparative Proteomics of Unactivated and Activated Peripheral Blood Eosinophils Blood. 124: 4117-4117. DOI: 10.1182/Blood.V124.21.4117.4117 |
0.695 |
|
| 2013 |
Richards AL, Vincent CE, Guthals A, Rose CM, Westphall MS, Bandeira N, Coon JJ. Neutron-encoded signatures enable product ion annotation from tandem mass spectra. Molecular & Cellular Proteomics : McP. 12: 3812-23. PMID 24043425 DOI: 10.1074/Mcp.M113.028951 |
0.464 |
|
| 2013 |
Jackson SS, Coughlin EE, Coon JJ, Miyamoto S. Identifying post-translational modifications of NEMO by tandem mass spectrometry after high affinity purification. Protein Expression and Purification. 92: 48-53. PMID 24012789 DOI: 10.1016/J.Pep.2013.08.020 |
0.363 |
|
| 2013 |
Frey BL, Ladror DT, Sondalle SB, Krusemark CJ, Jue AL, Coon JJ, Smith LM. Chemical derivatization of peptide carboxyl groups for highly efficient electron transfer dissociation. Journal of the American Society For Mass Spectrometry. 24: 1710-21. PMID 23918461 DOI: 10.1007/S13361-013-0701-2 |
0.454 |
|
| 2013 |
Hebert AS, Merrill AE, Stefely JA, Bailey DJ, Wenger CD, Westphall MS, Pagliarini DJ, Coon JJ. Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation. Molecular & Cellular Proteomics : McP. 12: 3360-9. PMID 23882030 DOI: 10.1074/Mcp.M113.032011 |
0.82 |
|
| 2013 |
Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, et al. Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation. The Journal of Biological Chemistry. 288: 26209-19. PMID 23864654 DOI: 10.1074/Jbc.M113.483396 |
0.651 |
|
| 2013 |
Merrill AE, Coon JJ. Quantifying proteomes and their post-translational modifications by stable isotope label-based mass spectrometry. Current Opinion in Chemical Biology. 17: 779-86. PMID 23835517 DOI: 10.1016/J.Cbpa.2013.06.011 |
0.43 |
|
| 2013 |
Moussavi-Harami SF, Annis DS, Ma W, Berry SM, Coughlin EE, Strotman LN, Maurer LM, Westphall MS, Coon JJ, Mosher DF, Beebe DJ. Characterization of molecules binding to the 70K N-terminal region of fibronectin by IFAST purification coupled with mass spectrometry. Journal of Proteome Research. 12: 3393-404. PMID 23750785 DOI: 10.1021/Pr400225P |
0.322 |
|
| 2013 |
Ledvina AR, Rose CM, McAlister GC, Syka JE, Westphall MS, Griep-Raming J, Schwartz JC, Coon JJ. Activated ion ETD performed in a modified collision cell on a hybrid QLT-Oribtrap mass spectrometer. Journal of the American Society For Mass Spectrometry. 24: 1623-33. PMID 23677544 DOI: 10.1007/S13361-013-0621-1 |
0.834 |
|
| 2013 |
Rose CM, Merrill AE, Bailey DJ, Hebert AS, Westphall MS, Coon JJ. Neutron encoded labeling for peptide identification. Analytical Chemistry. 85: 5129-37. PMID 23638792 DOI: 10.1021/Ac400476W |
0.773 |
|
| 2013 |
Rose CM, Russell JD, Ledvina AR, McAlister GC, Westphall MS, Griep-Raming J, Schwartz JC, Coon JJ, Syka JE. Multipurpose dissociation cell for enhanced ETD of intact protein species. Journal of the American Society For Mass Spectrometry. 24: 816-27. PMID 23609185 DOI: 10.1007/S13361-013-0622-0 |
0.822 |
|
| 2013 |
Russell JD, Scalf M, Book AJ, Ladror DT, Vierstra RD, Smith LM, Coon JJ. Characterization and quantification of intact 26S proteasome proteins by real-time measurement of intrinsic fluorescence prior to top-down mass spectrometry. Plos One. 8: e58157. PMID 23536786 DOI: 10.1371/Journal.Pone.0058157 |
0.674 |
|
| 2013 |
Hebert AS, Merrill AE, Bailey DJ, Still AJ, Westphall MS, Strieter ER, Pagliarini DJ, Coon JJ. Neutron-encoded mass signatures for multiplexed proteome quantification. Nature Methods. 10: 332-4. PMID 23435260 DOI: 10.1038/Nmeth.2378 |
0.786 |
|
| 2013 |
Tao WA, Coon J. 2012 ASMS Fall Workshop: mass spectrometry-based phosphorylation analysis and phosphoproteomics. Journal of the American Society For Mass Spectrometry. 24: 464-5. PMID 23381688 DOI: 10.1007/S13361-012-0562-0 |
0.388 |
|
| 2013 |
Vincent CE, Potts GK, Ulbrich A, Westphall MS, Atwood JA, Coon JJ, Weatherly DB. Segmentation of precursor mass range using "tiling" approach increases peptide identifications for MS1-based label-free quantification. Analytical Chemistry. 85: 2825-32. PMID 23350991 DOI: 10.1021/Ac303352N |
0.468 |
|
| 2013 |
Wenger CD, Coon JJ. A proteomics search algorithm specifically designed for high-resolution tandem mass spectra. Journal of Proteome Research. 12: 1377-86. PMID 23323968 DOI: 10.1021/Pr301024C |
0.76 |
|
| 2013 |
Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, ... ... Coon JJ, et al. Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome. Molecular Cell. 49: 186-99. PMID 23201123 DOI: 10.1016/J.Molcel.2012.10.024 |
0.737 |
|
| 2013 |
Vincent CE, Rensvold JW, Westphall MS, Pagliarini DJ, Coon JJ. Automated gas-phase purification for accurate, multiplexed quantification on a stand-alone ion-trap mass spectrometer. Analytical Chemistry. 85: 2079-86. PMID 23046161 DOI: 10.1021/Ac302156T |
0.497 |
|
| 2012 |
Grimsrud PA, Carson JJ, Hebert AS, Hubler SL, Niemi NM, Bailey DJ, Jochem A, Stapleton DS, Keller MP, Westphall MS, Yandell BS, Attie AD, Coon JJ, Pagliarini DJ. A quantitative map of the liver mitochondrial phosphoproteome reveals posttranslational control of ketogenesis. Cell Metabolism. 16: 672-83. PMID 23140645 DOI: 10.1016/J.Cmet.2012.10.004 |
0.732 |
|
| 2012 |
Yang C, Park AC, Davis NA, Russell JD, Kim B, Brand DD, Lawrence MJ, Ge Y, Westphall MS, Coon JJ, Greenspan DS. Comprehensive mass spectrometric mapping of the hydroxylated amino acid residues of the α1(V) collagen chain. The Journal of Biological Chemistry. 287: 40598-610. PMID 23060441 DOI: 10.1074/Jbc.M112.406850 |
0.565 |
|
| 2012 |
Van Etten J, Schagat TL, Hrit J, Weidmann CA, Brumbaugh J, Coon JJ, Goldstrohm AC. Human Pumilio proteins recruit multiple deadenylases to efficiently repress messenger RNAs. The Journal of Biological Chemistry. 287: 36370-83. PMID 22955276 DOI: 10.1074/Jbc.M112.373522 |
0.6 |
|
| 2012 |
Peterson AC, Russell JD, Bailey DJ, Westphall MS, Coon JJ. Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics. Molecular & Cellular Proteomics : McP. 11: 1475-88. PMID 22865924 DOI: 10.1074/Mcp.O112.020131 |
0.804 |
|
| 2012 |
Volkening JD, Bailey DJ, Rose CM, Grimsrud PA, Howes-Podoll M, Venkateshwaran M, Westphall MS, Ané JM, Coon JJ, Sussman MR. A proteogenomic survey of the Medicago truncatula genome. Molecular & Cellular Proteomics : McP. 11: 933-44. PMID 22774004 DOI: 10.1074/Mcp.M112.019471 |
0.634 |
|
| 2012 |
Rose CM, Venkateshwaran M, Grimsrud PA, Westphall MS, Sussman MR, Coon JJ, Ané JM. Medicago PhosphoProtein Database: a repository for Medicago truncatula phosphoprotein data. Frontiers in Plant Science. 3: 122. PMID 22701463 DOI: 10.3389/Fpls.2012.00122 |
0.347 |
|
| 2012 |
Rose CM, Venkateshwaran M, Volkening JD, Grimsrud PA, Maeda J, Bailey DJ, Park K, Howes-Podoll M, den Os D, Yeun LH, Westphall MS, Sussman MR, Ané JM, Coon JJ. Rapid phosphoproteomic and transcriptomic changes in the rhizobia-legume symbiosis. Molecular & Cellular Proteomics : McP. 11: 724-44. PMID 22683509 DOI: 10.1074/Mcp.M112.019208 |
0.586 |
|
| 2012 |
Ledvina AR, Chung TW, Hui R, Coon JJ, Ture?ek F. Cascade dissociations of peptide cation-radicals. Part 2. Infrared multiphoton dissociation and mechanistic studies of z-ions from pentapeptides. Journal of the American Society For Mass Spectrometry. 23: 1351-63. PMID 22669762 DOI: 10.1007/S13361-012-0409-8 |
0.761 |
|
| 2012 |
Chung TW, Hui R, Ledvina A, Coon JJ, Ture?ek F. Cascade dissociations of peptide cation-radicals. Part 1. Scope and effects of amino acid residues in penta-, nona-, and decapeptides. Journal of the American Society For Mass Spectrometry. 23: 1336-50. PMID 22669761 DOI: 10.1007/S13361-012-0408-9 |
0.757 |
|
| 2012 |
Bailey DJ, Rose CM, McAlister GC, Brumbaugh J, Yu P, Wenger CD, Westphall MS, Thomson JA, Coon JJ. Instant spectral assignment for advanced decision tree-driven mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 109: 8411-6. PMID 22586074 DOI: 10.1073/Pnas.1205292109 |
0.813 |
|
| 2012 |
Ledvina AR, Lee MV, McAlister GC, Westphall MS, Coon JJ. Infrared multiphoton dissociation for quantitative shotgun proteomics. Analytical Chemistry. 84: 4513-9. PMID 22480380 DOI: 10.1021/Ac300367P |
0.827 |
|
| 2012 |
Brumbaugh J, Hou Z, Russell JD, Howden SE, Yu P, Ledvina AR, Coon JJ, Thomson JA. Phosphorylation regulates human OCT4. Proceedings of the National Academy of Sciences of the United States of America. 109: 7162-8. PMID 22474382 DOI: 10.1073/Pnas.1203874109 |
0.787 |
|
| 2012 |
McAlister GC, Russell JD, Rumachik NG, Hebert AS, Syka JE, Geer LY, Westphall MS, Pagliarini DJ, Coon JJ. Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry. Analytical Chemistry. 84: 2875-82. PMID 22335612 DOI: 10.1021/Ac203430U |
0.832 |
|
| 2012 |
Rumachik NG, McAlister GC, Russell JD, Bailey DJ, Wenger CD, Coon JJ. Characterizing peptide neutral losses induced by negative electron-transfer dissociation (NETD). Journal of the American Society For Mass Spectrometry. 23: 718-27. PMID 22290482 DOI: 10.1007/S13361-011-0331-5 |
0.822 |
|
| 2011 |
Li W, Song C, Bailey DJ, Tseng GC, Coon JJ, Wysocki VH. Statistical analysis of electron transfer dissociation pairwise fragmentation patterns. Analytical Chemistry. 83: 9540-5. PMID 22022956 DOI: 10.1021/Ac202327R |
0.655 |
|
| 2011 |
Brumbaugh J, Rose CM, Phanstiel DH, Thomson JA, Coon JJ. Proteomics and pluripotency. Critical Reviews in Biochemistry and Molecular Biology. 46: 493-506. PMID 21999516 DOI: 10.3109/10409238.2011.624491 |
0.791 |
|
| 2011 |
Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ. Proteomic and phosphoproteomic comparison of human ES and iPS cells. Nature Methods. 8: 821-7. PMID 21983960 DOI: 10.1038/Nmeth.1699 |
0.801 |
|
| 2011 |
Wenger CD, Lee MV, Hebert AS, McAlister GC, Phanstiel DH, Westphall MS, Coon JJ. Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging. Nature Methods. 8: 933-5. PMID 21963608 DOI: 10.1038/Nmeth.1716 |
0.804 |
|
| 2011 |
Vasicek LA, Ledvina AR, Shaw J, Griep-Raming J, Westphall MS, Coon JJ, Brodbelt JS. Implementing photodissociation in an Orbitrap mass spectrometer. Journal of the American Society For Mass Spectrometry. 22: 1105-8. PMID 21953052 DOI: 10.1007/S13361-011-0119-7 |
0.787 |
|
| 2011 |
Ledvina AR, Savitski MM, Zubarev AR, Good DM, Coon JJ, Zubarev RA. Increased throughput of proteomics analysis by multiplexing high-resolution tandem mass spectra. Analytical Chemistry. 83: 7651-6. PMID 21913643 DOI: 10.1021/Ac201843E |
0.782 |
|
| 2011 |
Lee MV, Topper SE, Hubler SL, Hose J, Wenger CD, Coon JJ, Gasch AP. A dynamic model of proteome changes reveals new roles for transcript alteration in yeast. Molecular Systems Biology. 7: 514. PMID 21772262 DOI: 10.1038/Msb.2011.48 |
0.798 |
|
| 2011 |
Xia Q, Lee MV, Rose CM, Marsh AJ, Hubler SL, Wenger CD, Coon JJ. Characterization and diagnostic value of amino acid side chain neutral losses following electron-transfer dissociation. Journal of the American Society For Mass Spectrometry. 22: 255-64. PMID 21472585 DOI: 10.1007/S13361-010-0029-0 |
0.81 |
|
| 2011 |
McAlister GC, Phanstiel DH, Brumbaugh J, Westphall MS, Coon JJ. Higher-energy collision-activated dissociation without a dedicated collision cell. Molecular & Cellular Proteomics : McP. 10: O111.009456. PMID 21393638 DOI: 10.1074/Mcp.O111.009456 |
0.834 |
|
| 2011 |
Russell JD, Hilger RT, Ladror DT, Tervo MA, Scalf M, Shortreed MR, Coon JJ, Smith LM. Parallel detection of intrinsic fluorescence from peptides and proteins for quantification during mass spectrometric analysis. Analytical Chemistry. 83: 2187-93. PMID 21314137 DOI: 10.1021/Ac103023Q |
0.649 |
|
| 2011 |
Wenger CD, Phanstiel DH, Lee MV, Bailey DJ, Coon JJ. COMPASS: a suite of pre- and post-search proteomics software tools for OMSSA. Proteomics. 11: 1064-74. PMID 21298793 DOI: 10.1002/Pmic.201000616 |
0.818 |
|
| 2010 |
Ledvina AR, Beauchene NA, McAlister GC, Syka JE, Schwartz JC, Griep-Raming J, Westphall MS, Coon JJ. Activated-ion electron transfer dissociation improves the ability of electron transfer dissociation to identify peptides in a complex mixture. Analytical Chemistry. 82: 10068-74. PMID 21062032 DOI: 10.1021/Ac1020358 |
0.825 |
|
| 2010 |
Xia Q, Good DM, Wenger CD, Coon JJ. Intellinsity: a tool for visualization and analysis of liquid chromatography/tandem mass spectrometry sampling events. Rapid Communications in Mass Spectrometry : Rcm. 24: 3217-8. PMID 20941771 DOI: 10.1002/Rcm.4743 |
0.709 |
|
| 2010 |
Peterson AC, McAlister GC, Quarmby ST, Griep-Raming J, Coon JJ. Development and characterization of a GC-enabled QLT-Orbitrap for high-resolution and high-mass accuracy GC/MS. Analytical Chemistry. 82: 8618-28. PMID 20815337 DOI: 10.1021/Ac101757M |
0.789 |
|
| 2010 |
Good DM, Zürbig P, Argilés A, Bauer HW, Behrens G, Coon JJ, Dakna M, Decramer S, Delles C, Dominiczak AF, Ehrich JH, Eitner F, Fliser D, Frommberger M, Ganser A, et al. Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease. Molecular & Cellular Proteomics : McP. 9: 2424-37. PMID 20616184 DOI: 10.1074/Mcp.M110.001917 |
0.377 |
|
| 2010 |
Wenger CD, McAlister GC, Xia Q, Coon JJ. Sub-part-per-million precursor and product mass accuracy for high-throughput proteomics on an electron transfer dissociation-enabled orbitrap mass spectrometer. Molecular & Cellular Proteomics : McP. 9: 754-63. PMID 20124352 DOI: 10.1074/Mcp.M900541-Mcp200 |
0.828 |
|
| 2010 |
Swaney DL, Wenger CD, Coon JJ. Value of using multiple proteases for large-scale mass spectrometry-based proteomics. Journal of Proteome Research. 9: 1323-9. PMID 20113005 DOI: 10.1021/Pr900863U |
0.823 |
|
| 2010 |
Grimsrud PA, Swaney DL, Wenger CD, Beauchene NA, Coon JJ. Phosphoproteomics for the masses. Acs Chemical Biology. 5: 105-19. PMID 20047291 DOI: 10.1021/Cb900277E |
0.799 |
|
| 2010 |
McAlister GC, Phanstiel D, Wenger CD, Lee MV, Coon JJ. Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification. Analytical Chemistry. 82: 316-22. PMID 19938823 DOI: 10.1021/Ac902005S |
0.83 |
|
| 2010 |
Grimsrud PA, den Os D, Wenger CD, Swaney DL, Schwartz D, Sussman MR, Ané JM, Coon JJ. Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes. Plant Physiology. 152: 19-28. PMID 19923235 DOI: 10.1104/Pp.109.149625 |
0.795 |
|
| 2010 |
Good DM, Wenger CD, Coon JJ. The effect of interfering ions on search algorithm performance for electron-transfer dissociation data. Proteomics. 10: 164-7. PMID 19899080 DOI: 10.1002/Pmic.200900570 |
0.729 |
|
| 2009 |
Good DM, Coon JJ. Mass spectrometric analysis of body fluids for biomarker discovery. Methods in Molecular Biology (Clifton, N.J.). 566: 277-91. PMID 20058178 DOI: 10.1007/978-1-59745-562-6_18 |
0.405 |
|
| 2009 |
Ledvina AR, McAlister GC, Gardner MW, Smith SI, Madsen JA, Schwartz JC, Stafford GC, Syka JE, Brodbelt JS, Coon JJ. Infrared photoactivation reduces peptide folding and hydrogen-atom migration following ETD tandem mass spectrometry. Angewandte Chemie (International Ed. in English). 48: 8526-8. PMID 19795429 DOI: 10.1002/Anie.200903557 |
0.825 |
|
| 2009 |
Madsen JA, Gardner MW, Smith SI, Ledvina AR, Coon JJ, Schwartz JC, Stafford GC, Brodbelt JS. Top-down protein fragmentation by infrared multiphoton dissociation in a dual pressure linear ion trap. Analytical Chemistry. 81: 8677-86. PMID 19785447 DOI: 10.1021/Ac901554Z |
0.782 |
|
| 2009 |
Gardner MW, Smith SI, Ledvina AR, Madsen JA, Coon JJ, Schwartz JC, Stafford GC, Brodbelt JS. Infrared multiphoton dissociation of peptide cations in a dual pressure linear ion trap mass spectrometer. Analytical Chemistry. 81: 8109-18. PMID 19739654 DOI: 10.1021/Ac901313M |
0.791 |
|
| 2009 |
Second TP, Blethrow JD, Schwartz JC, Merrihew GE, MacCoss MJ, Swaney DL, Russell JD, Coon JJ, Zabrouskov V. Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures. Analytical Chemistry. 81: 7757-65. PMID 19689114 DOI: 10.1021/Ac901278Y |
0.801 |
|
| 2009 |
Duellman SJ, Thompson KL, Coon JJ, Burgess RR. Phosphorylation sites of Epstein-Barr virus EBNA1 regulate its function. The Journal of General Virology. 90: 2251-9. PMID 19439552 DOI: 10.1099/Vir.0.012260-0 |
0.316 |
|
| 2009 |
McGivern JV, Swaney DL, Coon JJ, Sheets MD. Toward defining the phosphoproteome of Xenopus laevis embryos. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 238: 1433-43. PMID 19384857 DOI: 10.1002/Dvdy.21941 |
0.638 |
|
| 2009 |
Coon JJ. Collisions or electrons? Protein sequence analysis in the 21st century. Analytical Chemistry. 81: 3208-15. PMID 19364119 DOI: 10.1021/Ac802330B |
0.322 |
|
| 2009 |
Good DM, Wenger CD, McAlister GC, Bai DL, Hunt DF, Coon JJ. Post-acquisition ETD spectral processing for increased peptide identifications. Journal of the American Society For Mass Spectrometry. 20: 1435-40. PMID 19362853 DOI: 10.1016/J.Jasms.2009.03.006 |
0.832 |
|
| 2009 |
Sadygov RG, Good DM, Swaney DL, Coon JJ. A new probabilistic database search algorithm for ETD spectra. Journal of Proteome Research. 8: 3198-205. PMID 19354237 DOI: 10.1021/Pr900153B |
0.683 |
|
| 2009 |
Phanstiel D, Unwin R, McAlister GC, Coon JJ. Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry. Analytical Chemistry. 81: 1693-8. PMID 19154110 DOI: 10.1021/Ac8019202 |
0.825 |
|
| 2009 |
Swaney DL, Wenger CD, Thomson JA, Coon JJ. Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 106: 995-1000. PMID 19144917 DOI: 10.1073/Pnas.0811964106 |
0.803 |
|
| 2009 |
Mischak H, Coon JJ, Novak J, Weissinger EM, Schanstra JP, Dominiczak AF. Capillary electrophoresis-mass spectrometry as a powerful tool in biomarker discovery and clinical diagnosis: an update of recent developments. Mass Spectrometry Reviews. 28: 703-24. PMID 18973238 DOI: 10.1002/Mas.20205 |
0.395 |
|
| 2008 |
Coon JJ, Zürbig P, Dakna M, Dominiczak AF, Decramer S, Fliser D, Frommberger M, Golovko I, Good DM, Herget-Rosenthal S, Jankowski J, Julian BA, Kellmann M, Kolch W, Massy Z, et al. CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics. Proteomics. Clinical Applications. 2: 964. PMID 20130789 DOI: 10.1002/Prca.200800024 |
0.37 |
|
| 2008 |
Frey BL, Krusemark CJ, Ledvina AR, Coon JJ, Belshaw PJ, Smith LM. Ion-Ion Reactions with Fixed-Charge Modified Proteins to Produce Ions in a Single, Very High Charge State. International Journal of Mass Spectrometry. 276: 136-143. PMID 19802328 DOI: 10.1016/J.Ijms.2008.07.029 |
0.76 |
|
| 2008 |
McAlister GC, Kiessel SE, Coon JJ. In vacuo formation of peptide-metal coordination complexes. International Journal of Mass Spectrometry. 276: 149-152. PMID 19424441 DOI: 10.1016/J.Ijms.2008.05.001 |
0.725 |
|
| 2008 |
Swaney DL, McAlister GC, Coon JJ. Decision tree-driven tandem mass spectrometry for shotgun proteomics. Nature Methods. 5: 959-64. PMID 18931669 DOI: 10.1038/Nmeth.1260 |
0.825 |
|
| 2008 |
Brumbaugh J, Phanstiel D, Coon JJ. Unraveling the histone's potential: a proteomics perspective. Epigenetics. 3: 254-7. PMID 18849650 DOI: 10.4161/Epi.3.5.7005 |
0.768 |
|
| 2008 |
Phanstiel D, Zhang Y, Marto JA, Coon JJ. Peptide and protein quantification using iTRAQ with electron transfer dissociation. Journal of the American Society For Mass Spectrometry. 19: 1255-62. PMID 18620867 DOI: 10.1016/J.Jasms.2008.05.023 |
0.811 |
|
| 2008 |
McAlister GC, Berggren WT, Griep-Raming J, Horning S, Makarov A, Phanstiel D, Stafford G, Swaney DL, Syka JE, Zabrouskov V, Coon JJ. A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer. Journal of Proteome Research. 7: 3127-36. PMID 18613715 DOI: 10.1021/Pr800264T |
0.841 |
|
| 2008 |
Hubler SL, Jue A, Keith J, McAlister GC, Craciun G, Coon JJ. Valence parity renders z(*)-type ions chemically distinct. Journal of the American Chemical Society. 130: 6388-94. PMID 18444621 DOI: 10.1021/Ja7099985 |
0.721 |
|
| 2008 |
Phanstiel D, Brumbaugh J, Berggren WT, Conard K, Feng X, Levenstein ME, McAlister GC, Thomson JA, Coon JJ. Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 105: 4093-8. PMID 18326628 DOI: 10.1073/Pnas.0710515105 |
0.779 |
|
| 2008 |
Zimmerli LU, Schiffer E, Zürbig P, Good DM, Kellmann M, Mouls L, Pitt AR, Coon JJ, Schmieder RE, Peter KH, Mischak H, Kolch W, Delles C, Dominiczak AF. Urinary proteomic biomarkers in coronary artery disease. Molecular & Cellular Proteomics : McP. 7: 290-8. PMID 17951555 DOI: 10.1074/Mcp.M700394-Mcp200 |
0.325 |
|
| 2007 |
Lecchi S, Nelson CJ, Allen KE, Swaney DL, Thompson KL, Coon JJ, Sussman MR, Slayman CW. Tandem phosphorylation of Ser-911 and Thr-912 at the C terminus of yeast plasma membrane H+-ATPase leads to glucose-dependent activation. The Journal of Biological Chemistry. 282: 35471-81. PMID 17932035 DOI: 10.1074/Jbc.M706094200 |
0.633 |
|
| 2007 |
Williams DK, McAlister GC, Good DM, Coon JJ, Muddiman DC. Dual electrospray ion source for electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer. Analytical Chemistry. 79: 7916-9. PMID 17867655 DOI: 10.1021/Ac071444H |
0.723 |
|
| 2007 |
Good DM, Wirtala M, McAlister GC, Coon JJ. Performance characteristics of electron transfer dissociation mass spectrometry. Molecular & Cellular Proteomics : McP. 6: 1942-51. PMID 17673454 DOI: 10.1074/Mcp.M700073-Mcp200 |
0.743 |
|
| 2007 |
Khidekel N, Ficarro SB, Clark PM, Bryan MC, Swaney DL, Rexach JE, Sun YE, Coon JJ, Peters EC, Hsieh-Wilson LC. Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics. Nature Chemical Biology. 3: 339-48. PMID 17496889 DOI: 10.1038/Nchembio881 |
0.719 |
|
| 2007 |
McAlister GC, Phanstiel D, Good DM, Berggren WT, Coon JJ. Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer. Analytical Chemistry. 79: 3525-34. PMID 17441688 DOI: 10.1021/Ac070020K |
0.837 |
|
| 2007 |
Chi A, Huttenhower C, Geer LY, Coon JJ, Syka JE, Bai DL, Shabanowitz J, Burke DJ, Troyanskaya OG, Hunt DF. Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 104: 2193-8. PMID 17287358 DOI: 10.1073/Pnas.0607084104 |
0.837 |
|
| 2007 |
Swaney DL, McAlister GC, Wirtala M, Schwartz JC, Syka JE, Coon JJ. Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors. Analytical Chemistry. 79: 477-85. PMID 17222010 DOI: 10.1021/Ac061457F |
0.825 |
|
| 2007 |
Zürbig P, Coon J, Bauer H, Behrens G, Dakna M, Dominiczak A, Decramer S, Ehrich J, Fliser D, Frommberger M, Ganser A, Giolami M, Golovko I, Good D, Gwinner W, et al. A database of naturally occurring human urinary peptides and proteins for use in clinical applications Nature Precedings. 2: 1-1. DOI: 10.1038/Npre.2007.1219.1 |
0.35 |
|
| 2006 |
Yue GE, Roper MG, Balchunas C, Pulsipher A, Coon JJ, Shabanowitz J, Hunt DF, Landers JP, Ferrance JP. Protein digestion and phosphopeptide enrichment on a glass microchip. Analytica Chimica Acta. 564: 116-22. PMID 17723369 DOI: 10.1016/J.Aca.2005.11.003 |
0.596 |
|
| 2006 |
Mikesh LM, Ueberheide B, Chi A, Coon JJ, Syka JE, Shabanowitz J, Hunt DF. The utility of ETD mass spectrometry in proteomic analysis. Biochimica Et Biophysica Acta. 1764: 1811-22. PMID 17118725 DOI: 10.1016/J.Bbapap.2006.10.003 |
0.825 |
|
| 2006 |
Good DM, Coon JJ. Advancing proteomics with ion/ion chemistry. Biotechniques. 40: 783-9. PMID 16774122 DOI: 10.2144/000112194 |
0.47 |
|
| 2005 |
Coon JJ, Ueberheide B, Syka JE, Dryhurst DD, Ausio J, Shabanowitz J, Hunt DF. Protein identification using sequential ion/ion reactions and tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 102: 9463-8. PMID 15983376 DOI: 10.1073/Pnas.0503189102 |
0.825 |
|
| 2005 |
Coon JJ, Shabanowitz J, Hunt DF, Syka JE. Electron transfer dissociation of peptide anions. Journal of the American Society For Mass Spectrometry. 16: 880-2. PMID 15907703 DOI: 10.1016/J.Jasms.2005.01.015 |
0.797 |
|
| 2005 |
Coon JJ, Syka JE, Shabanowitz J, Hunt DF. Tandem mass spectrometry for peptide and protein sequence analysis. Biotechniques. 38: 519, 521, 523. PMID 15884666 DOI: 10.2144/05384Te01 |
0.823 |
|
| 2004 |
Schroeder MJ, Shabanowitz J, Schwartz JC, Hunt DF, Coon JJ. A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry. Analytical Chemistry. 76: 3590-8. PMID 15228329 DOI: 10.1021/Ac0497104 |
0.761 |
|
| 2004 |
Syka JE, Coon JJ, Schroeder MJ, Shabanowitz J, Hunt DF. Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 101: 9528-33. PMID 15210983 DOI: 10.1073/Pnas.0402700101 |
0.84 |
|
| 2004 |
Coon JJ, Syka JEP, Schwartz JC, Shabanowitz J, Hunt DF. Anion dependence in the partitioning between proton and electron transfer in ion/ion reactions International Journal of Mass Spectrometry. 236: 33-42. DOI: 10.1016/J.Ijms.2004.05.005 |
0.555 |
|
| 2003 |
Coon JJ, Steele HA, Laipis PJ, Harrison WW. Direct atmospheric pressure coupling of polyacrylamide gel electrophoresis to mass spectrometry for rapid protein sequence analysis. Journal of Proteome Research. 2: 610-7. PMID 14692454 DOI: 10.1021/Pr034031F |
0.72 |
|
| 2002 |
Coon JJ, Steele HA, Laipis PJ, Harrison WW. Laser desorption-atmospheric pressure chemical ionization: a novel ion source for the direct coupling of polyacrylamide gel electrophoresis to mass spectrometry. Journal of Mass Spectrometry : Jms. 37: 1163-7. PMID 12447894 DOI: 10.1002/Jms.385 |
0.736 |
|
| 2002 |
Coon JJ, Harrison WW. Laser desorption-atmospheric pressure chemical ionization mass spectrometry for the analysis of peptides from aqueous solutions. Analytical Chemistry. 74: 5600-5. PMID 12433094 DOI: 10.1021/Ac020402K |
0.695 |
|
| 2002 |
Coon JJ, McHale KJ, Harrison WW. Atmospheric pressure laser desorption/chemical ionization mass spectrometry: a new ionization method based on existing themes. Rapid Communications in Mass Spectrometry : Rcm. 16: 681-5. PMID 11921247 DOI: 10.1002/Rcm.626 |
0.687 |
|
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