| Year |
Citation |
Score |
| 2023 |
Goya S, Sereewit J, Pfalmer D, Nguyen TV, Bakhash SAKM, Sobolik EB, Greninger AL. Genomic Characterization of Respiratory Syncytial Virus during 2022-23 Outbreak, Washington, USA. Emerging Infectious Diseases. 29: 865-868. PMID 36878012 DOI: 10.3201/eid2904.221834 |
0.372 |
|
| 2023 |
Roychoudhury P, Sereewit J, Xie H, Nunley E, Bakhash SM, Lieberman NAP, Greninger AL. Genomic Analysis of Early Monkeypox Virus Outbreak Strains, Washington, USA. Emerging Infectious Diseases. 29: 644-646. PMID 36732066 DOI: 10.3201/eid2903.221446 |
0.362 |
|
| 2022 |
Sereewit J, Lieberman NAP, Xie H, Bakhash SAKM, Nunley BE, Chung B, Mills MG, Roychoudhury P, Greninger AL. ORF-Interrupting Mutations in Monkeypox Virus Genomes from Washington and Ohio, 2022. Viruses. 14. PMID 36366490 DOI: 10.3390/v14112393 |
0.332 |
|
| 2022 |
Lieberman NAP, Armstrong TD, Chung B, Pfalmer D, Hennelly CM, Haynes A, Romeis E, Wang QQ, Zhang RL, Kou CX, Ciccarese G, Conte ID, Cusini M, Drago F, Nakayama SI, ... ... Greninger AL, et al. High-throughput nanopore sequencing of tandem repeat genes and reveals clade-specific patterns and recapitulates global whole genome phylogeny. Frontiers in Microbiology. 13: 1007056. PMID 36204625 DOI: 10.3389/fmicb.2022.1007056 |
0.303 |
|
| 2022 |
Chow EJ, Casto AM, Sampoleo R, Mills MG, Han PD, Xie H, Pfau B, Nguyen TV, Sereewit J, Rogers JH, Cox SN, Rolfes MA, Ogokeh C, Mosites E, Uyeki TM, ... Greninger AL, et al. Human Parainfluenza Virus in Homeless Shelters before and during the COVID-19 Pandemic, Washington, USA. Emerging Infectious Diseases. 28. PMID 36150508 DOI: 10.3201/eid2811.221156 |
0.321 |
|
| 2022 |
Shrestha L, Lin MJ, Xie H, Mills MG, Mohamed Bakhash SA, Gaur VP, Livingston RJ, Castor J, Bruce EA, Botten JW, Huang ML, Jerome KR, Greninger AL, Roychoudhury P. Clinical performance characteristics of the Swift Normalase Amplicon Panel for sensitive recovery of SARS-CoV-2 genomes. The Journal of Molecular Diagnostics : Jmd. PMID 35863699 DOI: 10.1016/j.jmoldx.2022.05.007 |
0.35 |
|
| 2022 |
Hannon WW, Roychoudhury P, Xie H, Shrestha L, Addetia A, Jerome KR, Greninger AL, Bloom JD. Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat. Virus Evolution. 8: veac052. PMID 35799885 DOI: 10.1093/ve/veac052 |
0.312 |
|
| 2022 |
Avetyan D, Hakobyan S, Nikoghosyan M, Ghukasyan L, Khachatryan G, Sirunyan T, Muradyan N, Zakharyan R, Chavushyan A, Hayrapetyan V, Hovhannisyan A, Mohamed Bakhash SA, Jerome KR, Roychoudhury P, Greninger AL, et al. Molecular Analysis of SARS-CoV-2 Lineages in Armenia. Viruses. 14. PMID 35632815 DOI: 10.3390/v14051074 |
0.368 |
|
| 2022 |
Juergens KB, Huckabee J, Greninger AL. Two Novel Iflaviruses Discovered in Bat Samples in Washington State. Viruses. 14. PMID 35632735 DOI: 10.3390/v14050994 |
0.37 |
|
| 2022 |
Phung Q, Lin MJ, Xie H, Greninger AL. Fragment Size-Based Enrichment of Viral Sequences in Plasma Cell-Free DNA. The Journal of Molecular Diagnostics : Jmd. 24: 476-484. PMID 35569878 DOI: 10.1016/j.jmoldx.2022.01.007 |
0.341 |
|
| 2022 |
Lin MJ, Rachleff VM, Xie H, Shrestha L, Lieberman NAP, Peddu V, Addetia A, Casto AM, Breit N, Mathias PC, Huang ML, Jerome KR, Greninger AL, Roychoudhury P. Host-pathogen dynamics in longitudinal clinical specimens from patients with COVID-19. Scientific Reports. 12: 5856. PMID 35393464 DOI: 10.1038/s41598-022-09752-2 |
0.382 |
|
| 2022 |
Hannon WW, Roychoudhury P, Xie H, Shrestha L, Addetia A, Jerome KR, Greninger AL, Bloom JD. Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat. Biorxiv : the Preprint Server For Biology. PMID 35169803 DOI: 10.1101/2022.02.09.479546 |
0.307 |
|
| 2021 |
Lownik JC, Farrar JS, Way GW, McKay A, Roychoudhury P, Greninger AL, Martin RK. Fast SARS-CoV-2 Variant Detection Using Snapback Primer High-Resolution Melting. Diagnostics (Basel, Switzerland). 11. PMID 34679489 DOI: 10.3390/diagnostics11101788 |
0.355 |
|
| 2021 |
Müller NF, Wagner C, Frazar CD, Roychoudhury P, Lee J, Moncla LH, Pelle B, Richardson M, Ryke E, Xie H, Shrestha L, Addetia A, Rachleff VM, Lieberman NAP, Huang ML, ... ... Greninger AL, et al. Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State. Science Translational Medicine. PMID 33941621 DOI: 10.1126/scitranslmed.abf0202 |
0.3 |
|
| 2021 |
Addetia A, Phung Q, Bradley BT, Lin M, Zhu H, Xie H, Huang ML, Greninger AL. In generation of BK and JC polyomavirus defective viral genomes in human urine samples associated with higher viral loads. Journal of Virology. PMID 33827948 DOI: 10.1128/JVI.00250-21 |
0.389 |
|
| 2021 |
Child SJ, Greninger AL, Geballe AP. Rapid adaptation to human protein kinase R by a unique genomic rearrangement in rhesus cytomegalovirus. Plos Pathogens. 17: e1009088. PMID 33497413 DOI: 10.1371/journal.ppat.1009088 |
0.316 |
|
| 2020 |
Addetia A, Lin MJ, Phung Q, Xie H, Huang ML, Ciccarese G, Dal Conte I, Cusini M, Drago F, Giacani L, Greninger AL. Estimation of Full-Length TprK Diversity in Treponema pallidum subsp. . Mbio. 11. PMID 33109767 DOI: 10.1128/mBio.02726-20 |
0.333 |
|
| 2020 |
Addetia A, Lin MJ, Peddu V, Roychoudhury P, Jerome KR, Greninger AL. Sensitive recovery of complete SARS-CoV-2 genomes from clinical samples using Swift Biosciences' SARS-CoV-2 multiplex amplicon sequencing panel. Journal of Clinical Microbiology. PMID 33046529 DOI: 10.1128/JCM.02226-20 |
0.362 |
|
| 2020 |
Mueller NF, Wagner C, Frazar CD, Roychoudhury P, Lee J, Moncla LH, Pelle B, Richardson M, Ryke E, Xie H, Shrestha L, Addetia A, Rachleff VM, Lieberman N, Huang ML, ... ... Greninger A, et al. Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State. Medrxiv : the Preprint Server For Health Sciences. PMID 33024981 DOI: 10.1101/2020.09.30.20204230 |
0.302 |
|
| 2020 |
Mohon AN, Oberding L, Hundt J, van Marle G, Pabbaraju K, Berenger B, Lisboa L, Griener T, Czub M, Doolan C, Servelitta V, Chiu C, Greninger A, Jerome K, Pillai DR. Optimization and clinical validation of dual-target RT-LAMP for SARS-CoV-2. Journal of Virological Methods. 113972. PMID 32941977 DOI: 10.1016/J.Jviromet.2020.113972 |
0.305 |
|
| 2020 |
Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Huang ML, Nalla A, Pepper G, Reinhardt A, Xie H, Shrestha L, Nguyen TN, Adler A, Brandstetter E, Cho S, et al. Cryptic transmission of SARS-CoV-2 in Washington state. Science (New York, N.Y.). PMID 32913002 DOI: 10.1126/Science.Abc0523 |
0.437 |
|
| 2020 |
Lieberman NAP, Peddu V, Xie H, Shrestha L, Huang ML, Mears MC, Cajimat MN, Bente DA, Shi PY, Bovier F, Roychoudhury P, Jerome KR, Moscona A, Porotto M, Greninger AL. In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age. Plos Biology. 18: e3000849. PMID 32898168 DOI: 10.1371/Journal.Pbio.3000849 |
0.365 |
|
| 2020 |
Corcorran MA, Olin S, Rani G, Nasenbeny K, Constantino-Shor C, Holmes C, Quinnan-Hostein L, Solan W, Newman GS, Roxby AC, Greninger AL, Jerome KR, Neme S, Lynch JB, Dellit TH, et al. Prolonged Persistence of PCR-detectable Virus During an Outbreak of SARS-CoV-2 in an Inpatient Geriatric Psychiatry Unit in King County, Washington. American Journal of Infection Control. PMID 32827597 DOI: 10.1016/J.Ajic.2020.08.025 |
0.324 |
|
| 2020 |
Addetia A, Crawford KHD, Dingens A, Zhu H, Roychoudhury P, Huang ML, Jerome KR, Bloom JD, Greninger AL. Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate. Journal of Clinical Microbiology. PMID 32826322 DOI: 10.1128/Jcm.02107-20 |
0.41 |
|
| 2020 |
Aubert M, Strongin DE, Roychoudhury P, Loprieno MA, Haick AK, Klouser LM, Stensland L, Huang ML, Makhsous N, Tait A, De Silva Feelixge HS, Galetto R, Duchateau P, Greninger AL, Stone D, et al. Gene editing and elimination of latent herpes simplex virus in vivo. Nature Communications. 11: 4148. PMID 32811834 DOI: 10.1038/S41467-020-17936-5 |
0.397 |
|
| 2020 |
Casto AM, Huang MW, Xie H, Jerome KR, Wald A, Johnston CM, Greninger AL. Herpes Simplex Virus Mistyping due to HSV-1 × HSV-2 Interspecies Recombination in Viral Gene Encoding Glycoprotein B. Viruses. 12. PMID 32781734 DOI: 10.3390/V12080860 |
0.469 |
|
| 2020 |
Aswad A, Aimola G, Wight D, Roychoudhury P, Zimmermann C, Hill J, Lassner D, Xie H, Huang ML, Parrish NF, Schultheiss HP, Venturini C, Lager S, Smith GCS, Charnock-Jones DS, ... ... Greninger AL, et al. Evolutionary history of endogenous Human Herpesvirus 6 reflects human migration out of Africa. Molecular Biology and Evolution. PMID 32722766 DOI: 10.1093/Molbev/Msaa190 |
0.389 |
|
| 2020 |
Cox RM, Sourimant J, Toots M, Yoon JJ, Ikegame S, Govindarajan M, Watkinson RE, Thibault P, Makhsous N, Lin MJ, Marengo JR, Sticher Z, Kolykhalov AA, Natchus MG, Greninger AL, et al. Orally efficacious broad-spectrum allosteric inhibitor of paramyxovirus polymerase. Nature Microbiology. PMID 32661315 DOI: 10.1038/S41564-020-0752-7 |
0.439 |
|
| 2020 |
Ramos KJ, Kapnadak SG, Collins BF, Pottinger PS, Wall R, Mays JA, Perchetti GA, Jerome KR, Khot S, Limaye AP, Mathias PC, Greninger A. Detection of SARS-CoV-2 by bronchoscopy after negative nasopharyngeal testing: Stay vigilant for COVID-19. Respiratory Medicine Case Reports. 30: 101120. PMID 32566476 DOI: 10.1016/J.Rmcr.2020.101120 |
0.339 |
|
| 2020 |
Mani NS, Budak JZ, Lan KF, Bryson-Cahn C, Zelikoff A, Barker GEC, Grant CW, Hart K, Barbee CJ, Sandoval MD, Dostal CL, Corcorran M, Ungerleider HM, Gates JO, Olin SV, ... ... Greninger AL, et al. Prevalence of COVID-19 Infection and Outcomes Among Symptomatic Healthcare Workers in Seattle, Washington. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 32548613 DOI: 10.1093/Cid/Ciaa761 |
0.303 |
|
| 2020 |
Perchetti GA, Nalla AK, Huang ML, Jerome KR, Greninger AL. Multiplexing primer/probe sets for detection of SARS-CoV-2 by qRT-PCR. Journal of Clinical Virology : the Official Publication of the Pan American Society For Clinical Virology. 129: 104499. PMID 32535397 DOI: 10.1016/J.Jcv.2020.104499 |
0.359 |
|
| 2020 |
Deng X, Gu W, Federman S, du Plessis L, Pybus OG, Faria N, Wang C, Yu G, Bushnell B, Pan CY, Guevara H, Sotomayor-Gonzalez A, Zorn K, Gopez A, Servellita V, ... ... Greninger AL, et al. Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California. Science (New York, N.Y.). PMID 32513865 DOI: 10.1126/Science.Abb9263 |
0.436 |
|
| 2020 |
Fang FC, Naccache SN, Greninger AL. The Laboratory Diagnosis of COVID-19-- Frequently-Asked Questions. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 32511679 DOI: 10.1093/Cid/Ciaa742 |
0.39 |
|
| 2020 |
Fauver JR, Petrone ME, Hodcroft EB, Shioda K, Ehrlich HY, Watts AG, Vogels CBF, Brito AF, Alpert T, Muyombwe A, Razeq J, Downing R, Cheemarla NR, Wyllie AL, Kalinich CC, ... ... Greninger AL, et al. Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology. Medrxiv : the Preprint Server For Health Sciences. PMID 32511630 DOI: 10.1101/2020.03.25.20043828 |
0.347 |
|
| 2020 |
Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Huang ML, Nalla A, Pepper G, Reinhardt A, Xie H, Shrestha L, Nguyen TN, Adler A, Brandstetter E, Cho S, et al. Cryptic transmission of SARS-CoV-2 in Washington State. Medrxiv : the Preprint Server For Health Sciences. PMID 32511596 DOI: 10.1101/2020.04.02.20051417 |
0.339 |
|
| 2020 |
Deng X, Gu W, Federman S, Du Plessis L, Pybus O, Faria N, Wang C, Yu G, Pan CY, Guevara H, Sotomayor-Gonzalez A, Zorn K, Gopez A, Servellita V, Hsu E, ... ... Greninger A, et al. A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage. Medrxiv : the Preprint Server For Health Sciences. PMID 32511579 DOI: 10.1101/2020.03.27.20044925 |
0.36 |
|
| 2020 |
Deng X, Gu W, Federman S, Du Plessis L, Pybus O, Faria N, Wang C, Yu G, Pan CY, Guevara H, Sotomayor-Gonzalez A, Zorn K, Gopez A, Servellita V, Hsu E, ... ... Greninger A, et al. A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage. Medrxiv : the Preprint Server For Health Sciences. PMID 32511579 DOI: 10.1101/2020.03.27.20044925 |
0.36 |
|
| 2020 |
Degli-Angeli E, Dragavon J, Huang ML, Lucic D, Cloherty G, Jerome KR, Greninger AL, Coombs RW. Validation and verification of the Abbott RealTime SARS-CoV-2 assay analytical and clinical performance. Journal of Clinical Virology : the Official Publication of the Pan American Society For Clinical Virology. 129: 104474. PMID 32504946 DOI: 10.1016/J.Jcv.2020.104474 |
0.348 |
|
| 2020 |
Perchetti GA, Nalla AK, Huang ML, Zhu H, Wei Y, Stensland L, Loprieno MA, Jerome KR, Greninger AL. Validation of SARS-CoV-2 detection across multiple specimen types. Journal of Clinical Virology : the Official Publication of the Pan American Society For Clinical Virology. 104438. PMID 32405257 DOI: 10.1016/J.Jcv.2020.104438 |
0.349 |
|
| 2020 |
Fauver JR, Petrone ME, Hodcroft EB, Shioda K, Ehrlich HY, Watts AG, Vogels CBF, Brito AF, Alpert T, Muyombwe A, Razeq J, Downing R, Cheemarla NR, Wyllie AL, Kalinich CC, ... ... Greninger AL, et al. Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States. Cell. PMID 32386545 DOI: 10.1016/J.Cell.2020.04.021 |
0.393 |
|
| 2020 |
Bryan A, Pepper G, Wener MH, Fink SL, Morishima C, Chaudhary A, Jerome KR, Mathias PC, Greninger AL. Performance Characteristics of the Abbott Architect SARS-CoV-2 IgG Assay and Seroprevalence in Boise, Idaho. Journal of Clinical Microbiology. PMID 32381641 DOI: 10.1128/Jcm.00941-20 |
0.329 |
|
| 2020 |
Peddu V, Shean RC, Xie H, Shrestha L, Perchetti GA, Minot SS, Roychoudhury P, Huang ML, Nalla A, Reddy SB, Phung Q, Reinhardt A, Jerome KR, Greninger AL. Metagenomic analysis reveals clinical SARS-CoV-2 infection and bacterial or viral superinfection and colonization. Clinical Chemistry. PMID 32379863 DOI: 10.1093/Clinchem/Hvaa106 |
0.474 |
|
| 2020 |
Lieberman JA, Pepper G, Naccache SN, Huang ML, Jerome KR, Greninger AL. Comparison of Commercially Available and Laboratory Developed Assays for Detection of SARS-CoV-2 in Clinical Laboratories. Journal of Clinical Microbiology. PMID 32350048 DOI: 10.1128/Jcm.00821-20 |
0.332 |
|
| 2020 |
Barrett SLR, Holmes EA, Long DR, Shean RC, Bautista GE, Ravishankar S, Peddu V, Cookson BT, Singh PK, Greninger AL, Salipante SJ. Cell free DNA from respiratory pathogens is detectable in the blood plasma of Cystic Fibrosis patients. Scientific Reports. 10: 6903. PMID 32327704 DOI: 10.1038/S41598-020-63970-0 |
0.314 |
|
| 2020 |
Nalla AK, Casto AM, Huang MW, Perchetti GA, Sampoleo R, Shrestha L, Wei Y, Zhu H, Jerome KR, Greninger AL. Comparative Performance of SARS-CoV-2 Detection Assays using Seven Different Primer/Probe Sets and One Assay Kit. Journal of Clinical Microbiology. PMID 32269100 DOI: 10.1128/Jcm.00557-20 |
0.381 |
|
| 2020 |
Addetia A, Tantalo LC, Lin MJ, Xie H, Huang ML, Marra CM, Greninger AL. Comparative genomics and full-length Tprk profiling of Treponema pallidum subsp. pallidum reinfection. Plos Neglected Tropical Diseases. 14: e0007921. PMID 32251462 DOI: 10.1371/Journal.Pntd.0007921 |
0.394 |
|
| 2020 |
Peddu V, Bradley BT, Casto AM, Shree R, Colbert BG, Xie H, Santo TK, Huang ML, Cheng EY, Konnick E, Salipante SJ, Jerome KR, Lockwood CM, Greninger AL. High-resolution profiling of human cytomegalovirus cell-free DNA in human plasma highlights its exceptionally fragmented nature. Scientific Reports. 10: 3734. PMID 32111931 DOI: 10.1038/S41598-020-60655-6 |
0.383 |
|
| 2020 |
Pandey U, Greninger AL, Levin GR, Jerome KR, Anand VC, Dien Bard J. Pathogen or bystander: clinical significance of detecting HHV-6 in pediatric CSF. Journal of Clinical Microbiology. PMID 32102858 DOI: 10.1128/Jcm.00313-20 |
0.333 |
|
| 2020 |
Marcink TC, Yariv E, Rybkina K, Más V, Bovier FT, des Georges A, Greninger AL, Alabi CA, Porotto M, Ben-Tal N, Moscona A. Hijacking the Fusion Complex of Human Parainfluenza Virus as an Antiviral Strategy. Mbio. 11. PMID 32047132 DOI: 10.1128/Mbio.03203-19 |
0.324 |
|
| 2020 |
Casto AM, Stout SC, Selvarangan R, Freeman AF, Newell BD, Stahl ED, Ahmed AA, Greninger AL, Yin DE. Evaluation of Genotypic Antiviral Resistance Testing as an Alternative to Phenotypic Testing in a Patient with DOCK8 Deficiency and Severe HSV-1 Disease. The Journal of Infectious Diseases. PMID 31970398 DOI: 10.1093/Infdis/Jiaa020 |
0.365 |
|
| 2019 |
Ikuta K, Roychoudhury P, Xie H, Mcclurkan CL, Walkiewicz M, Makhsous N, Huang ML, Beru Y, Alam M, Shepherd A, Lamotte ED, Patel K, Morris A, Ҫoruh B, Yu L, ... ... Greninger AL, et al. Trillions and Trillions: Herpes Simplex Virus-1 Hepatitis in an Immunocompetent Adult. Open Forum Infectious Diseases. 6: ofz465. PMID 31777756 DOI: 10.1093/Ofid/Ofz465 |
0.343 |
|
| 2019 |
Toots M, Yoon JJ, Cox RM, Hart M, Sticher ZM, Makhsous N, Plesker R, Barrena AH, Reddy PG, Mitchell DG, Shean RC, Bluemling GR, Kolykhalov AA, Greninger AL, Natchus MG, et al. Characterization of orally efficacious influenza drug with high resistance barrier in ferrets and human airway epithelia. Science Translational Medicine. 11. PMID 31645453 DOI: 10.1126/Scitranslmed.Aax5866 |
0.394 |
|
| 2019 |
Starr K, Greninger AL, Makhsous N, Jerome KR, Cook L. Comparison of Three Adenovirus Quantitative PCR Assays with ATCC Reference Strains and Clinical Samples. Journal of Clinical Microbiology. PMID 31434723 DOI: 10.1128/Jcm.00735-19 |
0.344 |
|
| 2019 |
Shean RC, Greninger AL. One future of clinical metagenomic sequencing for infectious diseases. Expert Review of Molecular Diagnostics. 1-3. PMID 31426667 DOI: 10.1080/14737159.2019.1658524 |
0.363 |
|
| 2019 |
Porotto M, Ferren M, Chen YW, Siu Y, Makhsous N, Rima B, Briese T, Greninger AL, Snoeck HW, Moscona A. Authentic Modeling of Human Respiratory Virus Infection in Human Pluripotent Stem Cell-Derived Lung Organoids. Mbio. 10. PMID 31064833 DOI: 10.1128/Mbio.00723-19 |
0.376 |
|
| 2019 |
Hanson DJ, Tsvetkova O, Rerolle G, Greninger AL, Sette A, Jing L, Campbell V, Koelle DM. Genome-wide approach to the CD4 T-cell response to HHV-6B. Journal of Virology. PMID 31043533 DOI: 10.1128/Jvi.00321-19 |
0.303 |
|
| 2019 |
Melendez D, Roberts MC, Greninger AL, Weissman S, No D, Rabinowitz P, Wasser S. Whole-genome analysis of extraintestinal pathogenic Escherichia coli (ExPEC) MDR ST73 and ST127 isolated from endangered southern resident killer whales (Orcinus orca). The Journal of Antimicrobial Chemotherapy. PMID 31032855 DOI: 10.1093/Jac/Dkz159 |
0.359 |
|
| 2019 |
Casto AM, Roychoudhury P, Xie H, Selke S, Perchetti GA, Wofford H, Huang ML, Verjans GMGM, Gottlieb GS, Wald A, Jerome KR, Koelle DM, Johnston C, Greninger AL. Large, stable, contemporary interspecies recombination events in circulating human herpes simplex viruses. The Journal of Infectious Diseases. PMID 31016321 DOI: 10.1093/Infdis/Jiz199 |
0.431 |
|
| 2019 |
Addetia A, Greninger AL, Adler A, Yuan S, Makhsous N, Qin X, Zerr DM. A novel, widespread allele results in reduced chlorhexidine susceptibility in . Antimicrobial Agents and Chemotherapy. PMID 30988144 DOI: 10.1128/Aac.02607-18 |
0.343 |
|
| 2019 |
Greninger AL. Societal Implications of the Internet of Pathogens. Journal of Clinical Microbiology. PMID 30971462 DOI: 10.1128/Jcm.01914-18 |
0.412 |
|
| 2019 |
Shean RC, Makhsous N, Stoddard GD, Lin MJ, Greninger AL. VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank. Bmc Bioinformatics. 20: 48. PMID 30674273 DOI: 10.1186/S12859-019-2606-Y |
0.455 |
|
| 2018 |
Casto AM, Adler AL, Makhsous N, Crawford K, Qin X, Kuypers JM, Huang ML, Zerr DM, Greninger AL. Prospective real-time metagenomic sequencing during norovirus outbreak reveals discrete transmission clusters. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 30576430 DOI: 10.1093/Cid/Ciy1020 |
0.361 |
|
| 2018 |
Vasireddy R, Vasireddy S, Brown-Elliott BA, Greninger AL, Davidson RM, Ard KL, Turenne CY, Wallace RJ. : A potential pulmonary pathogen isolated from multiple patients with bronchiectasis in the United States including the first case of clinical disease in a patient with Cystic Fibrosis. Journal of Clinical Microbiology. PMID 30429252 DOI: 10.1128/Jcm.00906-18 |
0.363 |
|
| 2018 |
Ramchandani MS, Jing L, Russell RM, Tran T, Laing KJ, Magaret AS, Selke S, Cheng A, Huang ML, Xie H, Strachan E, Greninger AL, Roychoudhury P, Jerome KR, Wald A, et al. Viral genetics modulate orolabial HSV-1 shedding in humans. The Journal of Infectious Diseases. PMID 30383234 DOI: 10.1093/Infdis/Jiy631 |
0.386 |
|
| 2018 |
Thornton CS, Rubin JE, Greninger AL, Peirano G, Chiu CY, Pillai DR. Epidemiological and genomic characterization of community-acquired Clostridium difficile infections. Bmc Infectious Diseases. 18: 443. PMID 30170546 DOI: 10.1186/S12879-018-3337-9 |
0.338 |
|
| 2018 |
Iketani S, Shean RC, Ferren M, Makhsous N, Aquino DB, des Georges A, Rima B, Mathieu C, Porotto M, Moscona A, Greninger AL. Viral Entry Properties Required for Fitness in Humans Are Lost through Rapid Genomic Change during Viral Isolation. Mbio. 9. PMID 29970463 DOI: 10.1128/Mbio.00898-18 |
0.441 |
|
| 2018 |
Goya S, Valinotto LE, Tittarelli E, Rojo GL, Nabaes Jodar MS, Greninger AL, Zaiat JJ, Marti MA, Mistchenko AS, Viegas M. An optimized methodology for whole genome sequencing of RNA respiratory viruses from nasopharyngeal aspirates. Plos One. 13: e0199714. PMID 29940028 DOI: 10.1371/Journal.Pone.0199714 |
0.483 |
|
| 2018 |
Roberts MC, Garland-Lewis G, Trufan S, Meschke JS, Fowler H, Shean RC, Greninger AL, Rabinowitz PM. Distribution of Staphylococcus species in dairy cows, workers, and shared farm environments. Fems Microbiology Letters. PMID 29912375 DOI: 10.1093/Femsle/Fny146 |
0.316 |
|
| 2018 |
Greninger AL, Roychoudhury P, Xie H, Casto A, Cent A, Pepper G, Koelle DM, Huang ML, Wald A, Johnston C, Jerome KR. Ultrasensitive Capture of Human Herpes Simplex Virus Genomes Directly from Clinical Samples Reveals Extraordinarily Limited Evolution in Cell Culture. Msphere. 3. PMID 29898986 DOI: 10.1128/mSphereDirect.00283-18 |
0.41 |
|
| 2018 |
Yoon JJ, Toots M, Lee S, Lee ME, Ludeke B, Luczo JM, Ganti K, Cox RM, Sticher ZM, Edpuganti V, Mitchell DG, Lockwood MA, Kolykhalov AA, Greninger AL, Moore ML, et al. Orally Efficacious Broad-Spectrum Ribonucleoside Analog Inhibitor of Influenza and Respiratory Syncytial Viruses. Antimicrobial Agents and Chemotherapy. PMID 29891600 DOI: 10.1128/Aac.00766-18 |
0.407 |
|
| 2018 |
Roberts MC, Joshi PR, Greninger AL, Melendez D, Paudel S, Acharya M, Bimali NK, Koju NP, No D, Chalise M, Kyes RC. The human clone ST22 SCCmec IV methicillin-resistant Staphylococcus aureus isolated from swine herds and wild primates in Nepal: is man the common source? Fems Microbiology Ecology. 94. PMID 29668933 DOI: 10.1093/Femsec/Fiy052 |
0.334 |
|
| 2018 |
Greninger AL, Knudsen GM, Roychoudhury P, Hanson DJ, Sedlak RH, Xie H, Guan J, Nguyen T, Peddu V, Boeckh M, Huang ML, Cook L, Depledge DP, Zerr DM, Koelle DM, et al. Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6. Bmc Genomics. 19: 204. PMID 29554870 DOI: 10.1186/S12864-018-4604-2 |
0.378 |
|
| 2018 |
Shean RC, Greninger AL. Private collection: high correlation of sample collection and patient admission date in clinical microbiological testing complicates sharing of phylodynamic metadata. Virus Evolution. 4: vey005. PMID 29511571 DOI: 10.1093/Ve/Vey005 |
0.347 |
|
| 2018 |
Reeves DB, Magaret AS, Greninger AL, Johnston C, Schiffer JT. Model-based estimation of superinfection prevalence from limited datasets. Journal of the Royal Society, Interface. 15. PMID 29491180 DOI: 10.1098/Rsif.2017.0968 |
0.381 |
|
| 2018 |
Greninger AL, Roychoudhury P, Makhsous N, Hanson D, Chase J, Krueger G, Xie H, Huang ML, Saunders L, Ablashi D, Koelle DM, Cook L, Jerome KR. Copy number heterogeneity, large origin tandem repeats, and interspecies recombination in HHV-6A and HHV-6B reference strains. Journal of Virology. PMID 29491155 DOI: 10.1128/Jvi.00135-18 |
0.34 |
|
| 2018 |
Thakkar VD, Cox RM, Sawatsky B, da Fontoura Budaszewski R, Sourimant J, Wabbel K, Makhsous N, Greninger AL, von Messling V, Plemper RK. The Unstructured Paramyxovirus Nucleocapsid Protein Tail Domain Modulates Viral Pathogenesis through Regulation of Transcriptase Activity. Journal of Virology. PMID 29437959 DOI: 10.1128/Jvi.02064-17 |
0.424 |
|
| 2018 |
Xue KS, Greninger AL, Pérez-Osorio A, Bloom JD. Cooperating H3N2 Influenza Virus Variants Are Not Detectable in Primary Clinical Samples. Msphere. 3. PMID 29299533 DOI: 10.1128/mSphereDirect.00552-17 |
0.317 |
|
| 2018 |
Casto A, Adler A, Makhsous N, Qin X, Crawford K, Jerome K, Zerr D, Greninger A. 1647. Real-Time Metagenomic Sequencing Reveals Discrete Transmission Clusters Within a Hospital-Associated Norovirus Outbreak Open Forum Infectious Diseases. 5: S49-S49. DOI: 10.1093/Ofid/Ofy209.117 |
0.301 |
|
| 2017 |
Johnston C, Magaret A, Roychoudhury P, Greninger AL, Reeves D, Schiffer J, Jerome KR, Sather C, Diem K, Lingappa JR, Celum C, Koelle DM, Wald A. Dual-strain genital herpes simplex virus type 2 (HSV-2) infection in the US, Peru, and 8 countries in sub-Saharan Africa: A nested cross-sectional viral genotyping study. Plos Medicine. 14: e1002475. PMID 29281620 DOI: 10.1371/Journal.Pmed.1002475 |
0.362 |
|
| 2017 |
Greninger AL, Pepper G, Shean RC, Cent A, Palileo I, Kuypers JM, Schiffer JT, Jerome KR. Myeloablation-associated deletion of ORF4 in a human coronavirus 229E infection. Npj Genomic Medicine. 2: 30. PMID 29263840 DOI: 10.1038/S41525-017-0033-4 |
0.455 |
|
| 2017 |
Greninger AL. A decade of RNA virus metagenomics is (not) enough. Virus Research. PMID 29055712 DOI: 10.1016/J.Virusres.2017.10.014 |
0.361 |
|
| 2017 |
Paniz-Mondolfi AE, Greninger AL, Ladutko L, Brown-Elliott BA, Vasireddy R, Jakubiec W, Vasireddy S, Wallace RJ, Simmon KE, Dunn BE, Jackoway G, Vora SB, Quinn KK, Qin X, Campbell S. Mycobacterium grossiae sp. nov., a rapidly growing, scotochromogenic species isolated from human clinical respiratory and blood culture specimens. International Journal of Systematic and Evolutionary Microbiology. PMID 28984546 DOI: 10.1099/Ijsem.0.002216 |
0.343 |
|
| 2017 |
Bateman AC, Perez-Osorio AC, Li Z, Tran M, Greninger AL. Conservation and Recombination in the Genome Sequence of Haemophilus influenzae Type f WAPHL1. Genome Announcements. 5. PMID 28935730 DOI: 10.1128/Genomea.00929-17 |
0.423 |
|
| 2017 |
Makhsous N, Jensen NL, Haman KH, Batts WN, Jerome KR, Winton JR, Greninger AL. Isolation and characterization of the fall Chinook aquareovirus. Virology Journal. 14: 170. PMID 28870221 DOI: 10.1186/S12985-017-0839-9 |
0.351 |
|
| 2017 |
Ogimi C, Greninger AL, Waghmare AA, Kuypers JM, Shean RC, Xie H, Leisenring WM, Stevens-Ayers TL, Jerome KR, Englund JA, Boeckh M. Prolonged Shedding of Human Coronavirus in Hematopoietic Cell Transplant Recipients: Risk Factors and Viral Genome Evolution. The Journal of Infectious Diseases. 216: 203-209. PMID 28838146 DOI: 10.1093/Infdis/Jix264 |
0.323 |
|
| 2017 |
Johnston C, Magaret A, Roychoudhury P, Greninger AL, Cheng A, Diem K, Fitzgibbon MP, Huang ML, Selke S, Lingappa JR, Celum C, Jerome KR, Wald A, Koelle DM. Highly conserved intragenic HSV-2 sequences: Results from next-generation sequencing of HSV-2 UL and US regions from genital swabs collected from 3 continents. Virology. 510: 90-98. PMID 28711653 DOI: 10.1016/J.Virol.2017.06.031 |
0.447 |
|
| 2017 |
Kozyreva VK, Truong CL, Greninger AL, Crandall J, Mukhopadhyay R, Chaturvedi V. Validation and Implementation of Clinical Laboratory Improvements Act (CLIA)-Compliant Whole Genome Sequencing in Public Health Microbiology Laboratory. Journal of Clinical Microbiology. PMID 28592550 DOI: 10.1128/Jcm.00361-17 |
0.393 |
|
| 2017 |
Greninger AL, Waghmare A, Adler A, Qin X, Crowley JL, Englund JA, Kuypers JM, Jerome KR, Zerr DM. Rule-Out Outbreak: 24-Hour Metagenomic Next-Generation Sequencing for Characterizing Respiratory Virus Source for Infection Prevention. Journal of the Pediatric Infectious Diseases Society. PMID 28379561 DOI: 10.1093/Jpids/Pix019 |
0.44 |
|
| 2017 |
Greninger AL, Streithorst J, Chiu CY, Miller S. First Complete Genome Sequence of Corynebacterium riegelii. Genome Announcements. 5. PMID 28360160 DOI: 10.1128/Genomea.00084-17 |
0.429 |
|
| 2017 |
Greninger AL, Streithorst J, Golden JA, Chiu CY, Miller S. Complete genome sequence of sequential Pandoraea apista isolates from the same cystic fibrosis patient supports a model of chronic colonization with in vivo strain evolution over time. Diagnostic Microbiology and Infectious Disease. 87: 1-6. PMID 28336132 DOI: 10.1016/J.Diagmicrobio.2016.10.013 |
0.405 |
|
| 2017 |
Koelle DM, Norberg P, Fitzgibbon MP, Russell RM, Greninger AL, Huang ML, Stensland L, Jing L, Magaret AS, Diem K, Selke S, Xie H, Celum C, Lingappa JR, Jerome KR, et al. Worldwide circulation of HSV-2 × HSV-1 recombinant strains. Scientific Reports. 7: 44084. PMID 28287142 DOI: 10.1038/Srep44084 |
0.393 |
|
| 2017 |
Shean RC, Makhsous N, Crawford RL, Jerome KR, Greninger AL. Draft Genome Sequences of Six Novel Picorna-Like Viruses from Washington State Spiders. Genome Announcements. 5. PMID 28254976 DOI: 10.1128/Genomea.01705-16 |
0.45 |
|
| 2017 |
Medina GN, Knudsen GM, Greninger AL, Kloc A, Díaz-San Segundo F, Rieder E, Grubman MJ, DeRisi JL, de Los Santos T. Interaction between FMDV L(pro) and transcription factor ADNP is required for optimal viral replication. Virology. 505: 12-22. PMID 28219017 DOI: 10.1016/J.Virol.2017.02.010 |
0.52 |
|
| 2017 |
Makhsous N, Shean RC, Droppers D, Guan J, Jerome KR, Greninger AL. Genome Sequences of Three Novel Bunyaviruses, Two Novel Rhabdoviruses, and One Novel Nyamivirus from Washington State Moths. Genome Announcements. 5. PMID 28209840 DOI: 10.1128/Genomea.01668-16 |
0.408 |
|
| 2017 |
Bateman AC, Greninger AL, Atienza EE, Limaye AP, Jerome KR, Cook L. Quantification of BK Virus Standards by Quantitative Real-Time PCR and Droplet Digital PCR Is Confounded by Multiple Virus Populations in the WHO BKV International Standard. Clinical Chemistry. PMID 28100494 DOI: 10.1373/Clinchem.2016.265512 |
0.353 |
|
| 2016 |
Greninger AL, Bateman AC, Atienza EE, Wendt S, Makhsous N, Jerome KR, Cook L. Copy number heterogeneity of JC virus standards. Journal of Clinical Microbiology. PMID 27974546 DOI: 10.1128/Jcm.02337-16 |
0.449 |
|
| 2016 |
Greene TT, Tokuyama M, Knudsen GM, Kunz M, Lin J, Greninger AL, DeFilippis VR, DeRisi JL, Raulet DH, Coscoy L. A Herpesviral induction of RAE-1 NKG2D ligand expression occurs through release of HDAC mediated repression. Elife. 5. PMID 27874833 DOI: 10.7554/Elife.14749 |
0.494 |
|
| 2016 |
Greninger AL, Streithorst J, Chiu CY, Miller S. First Draft Genome Sequences of Neisseria sp. Strain 83E34 and Neisseria sp. Strain 74A18, Previously Identified as CDC Eugonic Fermenter 4b Species. Genome Announcements. 4. PMID 27834718 DOI: 10.1128/Genomea.01277-16 |
0.349 |
|
| 2016 |
Greninger AL, Zerr DM, Qin X, Adler AL, Sampoleo R, Kuypers JM, Englund JA, Jerome KR. Rapid metagenomic next-generation sequencing during an investigation of hospital-acquired human parainfluenza virus 3 infections. Journal of Clinical Microbiology. PMID 27795347 DOI: 10.1128/Jcm.01881-16 |
0.458 |
|
| 2016 |
Aubert M, Madden EA, Loprieno M, DeSilva Feelixge HS, Stensland L, Huang ML, Greninger AL, Roychoudhury P, Niyonzima N, Nguyen T, Magaret A, Galleto R, Stone D, Jerome KR. In vivo disruption of latent HSV by designer endonuclease therapy. Jci Insight. 1. PMID 27642635 DOI: 10.1172/Jci.Insight.88468 |
0.402 |
|
| 2016 |
Naccache SN, Thézé J, Sardi SI, Somasekar S, Greninger AL, Bandeira AC, Campos GS, Tauro LB, Faria NR, Pybus OG, Chiu CY. Distinct Zika Virus Lineage in Salvador, Bahia, Brazil. Emerging Infectious Diseases. 22. PMID 27448188 DOI: 10.3201/Eid2210.160663 |
0.462 |
|
| 2016 |
Greninger AL, Jerome KR. Draft Genome Sequence of Goose Dicistrovirus. Genome Announcements. 4. PMID 26941149 DOI: 10.1128/Genomea.00068-16 |
0.437 |
|
| 2016 |
Sedlak RH, Liang S, Niyonzima N, De Silva Feelixge HS, Roychoudhury P, Greninger AL, Weber ND, Boissel S, Scharenberg AM, Cheng A, Magaret A, Bumgarner R, Stone D, Jerome KR. Digital detection of endonuclease mediated gene disruption in the HIV provirus. Scientific Reports. 6: 20064. PMID 26829887 DOI: 10.1038/Srep20064 |
0.353 |
|
| 2016 |
De Silva Feelixge HS, Stone D, Pietz HL, Roychoudhury P, Greninger AL, Schiffer JT, Aubert M, Jerome KR. Detection of treatment-resistant infectious HIV after genome-directed antiviral endonuclease therapy. Antiviral Research. 126: 90-8. PMID 26718067 DOI: 10.1016/J.Antiviral.2015.12.007 |
0.366 |
|
| 2016 |
De Silva Feelixge HS, Stone D, Pietz HL, Roychoudhury P, Greninger AL, Schiffer JT, Aubert M, Jerome KR. Detection of treatment-resistant infectious HIV after genome-directed antiviral endonuclease therapy Antiviral Research. 126: 90-98. DOI: 10.1016/S1525-0016(16)33573-0 |
0.378 |
|
| 2015 |
Naccache SN, Greninger A, Samayoa E, Miller S, Chiu CY. Clinical Utility of Unbiased Metagenomic Next-Generation Sequencing in Diagnosis of Acute Infectious Diseases: A Prospective Case Series. Open Forum Infectious Diseases. 2: 103. PMID 27437408 DOI: 10.1093/Ofid/Ofv131.23 |
0.433 |
|
| 2015 |
Soupene E, Kao J, Cheng DH, Wang D, Greninger AL, Knudsen GM, DeRisi JL, Kuypers FA. Association of NMT2 with the acyl-CoA carrier ACBD6 protects the N-myristoyltransferase reaction from palmitoyl-CoA. Journal of Lipid Research. PMID 26621918 DOI: 10.1194/Jlr.M065003 |
0.456 |
|
| 2015 |
Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Klenschmidt-DeMasters BK, Dominguez SR, Chiu CY. Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing. Genome Medicine. 7: 113. PMID 26620704 DOI: 10.1186/S13073-015-0235-2 |
0.401 |
|
| 2015 |
Greninger AL, Naccache SN, Federman S, Yu G, Mbala P, Bres V, Stryke D, Bouquet J, Somasekar S, Linnen JM, Dodd R, Mulembakani P, Schneider BS, Muyembe-Tamfum JJ, Stramer SL, et al. Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. Genome Medicine. 7: 99. PMID 26416663 DOI: 10.1186/S13073-015-0220-9 |
0.455 |
|
| 2015 |
Greninger AL, Kozyreva V, Truong CL, Graves M, Chaturvedi V. Draft Genome Sequence of Turicella otitidis TD1, Isolated from a Patient with Bacteremia. Genome Announcements. 3. PMID 26383669 DOI: 10.1128/Genomea.01060-15 |
0.378 |
|
| 2015 |
Greninger AL, Kozyreva V, Truong CL, Longoria R, Chaturvedi V. Draft Genome Sequence of Kerstersia gyiorum CG1, Isolated from a Leg Ulcer. Genome Announcements. 3. PMID 26358603 DOI: 10.1128/Genomea.01036-15 |
0.399 |
|
| 2015 |
Greninger AL, Cunningham G, Chiu CY, Miller S. Draft Genome Sequence of Mycobacterium heckeshornense Strain RLE. Genome Announcements. 3. PMID 26316632 DOI: 10.1128/Genomea.00930-15 |
0.407 |
|
| 2015 |
Greninger AL, Cunningham G, Chiu CY, Miller S. Draft Genome Sequence of Mycobacterium heraklionense Strain Davo. Genome Announcements. 3. PMID 26205863 DOI: 10.1128/Genomea.00807-15 |
0.396 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequence of Laverivirus UC1, a Dicistrovirus-Like RNA Virus Featuring an Unusual Genome Organization. Genome Announcements. 3. PMID 26139710 DOI: 10.1128/Genomea.00656-15 |
0.596 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequence of Tombunodavirus UC1. Genome Announcements. 3. PMID 26139709 DOI: 10.1128/Genomea.00655-15 |
0.615 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequence of Picalivirus D Recovered from San Francisco Wastewater. Genome Announcements. 3. PMID 26139708 DOI: 10.1128/Genomea.00654-15 |
0.59 |
|
| 2015 |
Greninger AL, Cunningham G, Yu JM, Hsu ED, Chiu CY, Miller S. Draft Genome Sequence of Mycobacterium elephantis Strain Lipa. Genome Announcements. 3. PMID 26112791 DOI: 10.1128/Genomea.00691-15 |
0.394 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequences of Leviviridae RNA Phages EC and MB Recovered from San Francisco Wastewater. Genome Announcements. 3. PMID 26112785 DOI: 10.1128/Genomea.00652-15 |
0.578 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequences of Ciliovirus and Brinovirus from San Francisco Wastewater. Genome Announcements. 3. PMID 26112784 DOI: 10.1128/Genomea.00651-15 |
0.591 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequences of Marine RNA Viruses SF-1, SF-2, and SF-3 Recovered from San Francisco Wastewater. Genome Announcements. 3. PMID 26089423 DOI: 10.1128/Genomea.00653-15 |
0.601 |
|
| 2015 |
Greninger AL, Cunningham G, Yu JM, Hsu ED, Chiu CY, Miller S. Draft Genome Sequence of Mycobacterium arupense Strain GUC1. Genome Announcements. 3. PMID 26067970 DOI: 10.1128/Genomea.00630-15 |
0.408 |
|
| 2015 |
Greninger AL, Cunningham G, Hsu ED, Yu JM, Chiu CY, Miller S. Draft Genome Sequence of Mycobacterium obuense Strain UC1, Isolated from Patient Sputum. Genome Announcements. 3. PMID 26067960 DOI: 10.1128/Genomea.00612-15 |
0.411 |
|
| 2015 |
Greninger AL, Chorny I, Knowles S, Ng VL, Chaturvedi V. Draft Genome Sequences of Four NDM-1-Producing Klebsiella pneumoniae Strains from a Health Care Facility in Northern California. Genome Announcements. 3. PMID 25977423 DOI: 10.1128/Genomea.00421-15 |
0.333 |
|
| 2015 |
Greninger AL, Langelier C, Cunningham G, Keh C, Melgar M, Chiu CY, Miller S. Two Rapidly Growing Mycobacterial Species Isolated from a Brain Abscess: First Whole-Genome Sequences of Mycobacterium immunogenum and Mycobacterium llatzerense. Journal of Clinical Microbiology. 53: 2374-7. PMID 25926490 DOI: 10.1128/Jcm.00402-15 |
0.397 |
|
| 2015 |
Greninger AL. Picornavirus--host interactions to construct viral secretory membranes. Progress in Molecular Biology and Translational Science. 129: 189-212. PMID 25595805 DOI: 10.1016/Bs.Pmbts.2014.10.007 |
0.378 |
|
| 2015 |
Martínez MA, Soto-Del Río Mde L, Gutiérrez RM, Chiu CY, Greninger AL, Contreras JF, López S, Arias CF, Isa P. DNA microarray for detection of gastrointestinal viruses. Journal of Clinical Microbiology. 53: 136-45. PMID 25355758 DOI: 10.1128/Jcm.01317-14 |
0.433 |
|
| 2015 |
Nomura Y, Greninger A, Messacar K, Dunnebacke T, Naccache SN, Bouquet J, Mirsky D, Press C, Kleinschmidt-Demasters BK, Parker S, Dominguez S, Chiu CY. Balamuthia Mandrillaris Encephalitis Detected by Next Generation Sequencing of Cerebrospinal Fluid Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv133.137 |
0.336 |
|
| 2014 |
Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, et al. A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples. Genome Research. 24: 1180-92. PMID 24899342 DOI: 10.1101/Gr.171934.113 |
0.576 |
|
| 2014 |
Coffey LL, Page BL, Greninger AL, Herring BL, Russell RC, Doggett SL, Haniotis J, Wang C, Deng X, Delwart EL. Enhanced arbovirus surveillance with deep sequencing: Identification of novel rhabdoviruses and bunyaviruses in Australian mosquitoes. Virology. 448: 146-58. PMID 24314645 DOI: 10.1016/J.Virol.2013.09.026 |
0.527 |
|
| 2013 |
Naccache SN, Greninger AL, Lee D, Coffey LL, Phan T, Rein-Weston A, Aronsohn A, Hackett J, Delwart EL, Chiu CY. The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns. Journal of Virology. 87: 11966-77. PMID 24027301 DOI: 10.1128/Jvi.02323-13 |
0.453 |
|
| 2013 |
Nelson CS, Fuller CK, Fordyce PM, Greninger AL, Li H, DeRisi JL. Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets. Nucleic Acids Research. 41: 5991-6004. PMID 23625967 DOI: 10.1093/Nar/Gkt259 |
0.678 |
|
| 2013 |
Greninger AL, Knudsen GM, Betegon M, Burlingame AL, DeRisi JL. ACBD3 interaction with TBC1 domain 22 protein is differentially affected by enteroviral and kobuviral 3A protein binding. Mbio. 4: e00098-13. PMID 23572552 DOI: 10.1128/Mbio.00098-13 |
0.517 |
|
| 2013 |
Herman EK, Greninger AL, Visvesvara GS, Marciano-Cabral F, Dacks JB, Chiu CY. The mitochondrial genome and a 60-kb nuclear DNA segment from Naegleria fowleri, the causative agent of primary amoebic meningoencephalitis. The Journal of Eukaryotic Microbiology. 60: 179-91. PMID 23360210 DOI: 10.1111/Jeu.12022 |
0.388 |
|
| 2012 |
Yu G, Greninger AL, Isa P, Phan TG, MartÃnez MA, de la Luz Sanchez M, Contreras JF, Santos-Preciado JI, Parsonnet J, Miller S, DeRisi JL, Delwart E, Arias CF, Chiu CY. Discovery of a novel polyomavirus in acute diarrheal samples from children. Plos One. 7: e49449. PMID 23166671 DOI: 10.1371/Journal.Pone.0049449 |
0.607 |
|
| 2012 |
O'Donoghue AJ, Eroy-Reveles AA, Knudsen GM, Ingram J, Zhou M, Statnekov JB, Greninger AL, Hostetter DR, Qu G, Maltby DA, Anderson MO, Derisi JL, McKerrow JH, Burlingame AL, Craik CS. Global identification of peptidase specificity by multiplex substrate profiling. Nature Methods. 9: 1095-100. PMID 23023596 DOI: 10.1038/Nmeth.2182 |
0.504 |
|
| 2012 |
Greninger AL, Knudsen GM, Betegon M, Burlingame AL, Derisi JL. The 3A protein from multiple picornaviruses utilizes the golgi adaptor protein ACBD3 to recruit PI4KIIIβ. Journal of Virology. 86: 3605-16. PMID 22258260 DOI: 10.1128/Jvi.06778-11 |
0.518 |
|
| 2010 |
Greninger AL, Chen EC, Sittler T, Scheinerman A, Roubinian N, Yu G, Kim E, Pillai DR, Guyard C, Mazzulli T, Isa P, Arias CF, Hackett J, Schochetman G, Miller S, et al. A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America. Plos One. 5: e13381. PMID 20976137 DOI: 10.1371/Journal.Pone.0013381 |
0.492 |
|
| 2010 |
Greninger AL, Holtz L, Kang G, Ganem D, Wang D, DeRisi JL. Serological evidence of human klassevirus infection. Clinical and Vaccine Immunology : Cvi. 17: 1584-8. PMID 20739504 DOI: 10.1128/Cvi.00152-10 |
0.542 |
|
| 2010 |
Chiu CY, Greninger AL, Chen EC, Haggerty TD, Parsonnet J, Delwart E, Derisi JL, Ganem D. Cultivation and serological characterization of a human Theiler's-like cardiovirus associated with diarrheal disease. Journal of Virology. 84: 4407-14. PMID 20164225 DOI: 10.1128/Jvi.02536-09 |
0.574 |
|
| 2010 |
Kistler AL, Smith JM, Greninger AL, Derisi JL, Ganem D. Analysis of naturally occurring avian bornavirus infection and transmission during an outbreak of proventricular dilatation disease among captive psittacine birds. Journal of Virology. 84: 2176-9. PMID 19955301 DOI: 10.1128/Jvi.02191-09 |
0.554 |
|
| 2009 |
Gancz AY, Kistler AL, Greninger AL, Farnoushi Y, Mechani S, Perl S, Berkowitz A, Perez N, Clubb S, DeRisi JL, Ganem D, Lublin A. Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4. Virology Journal. 6: 100. PMID 19589169 DOI: 10.1186/1743-422X-6-100 |
0.61 |
|
| 2009 |
Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, DeRisi JL. The complete genome of klassevirus - a novel picornavirus in pediatric stool. Virology Journal. 6: 82. PMID 19538752 DOI: 10.1186/1743-422X-6-82 |
0.789 |
|
| 2008 |
Chiu CY, Greninger AL, Kanada K, Kwok T, Fischer KF, Runckel C, Louie JK, Glaser CA, Yagi S, Schnurr DP, Haggerty TD, Parsonnet J, Ganem D, DeRisi JL. Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections. Proceedings of the National Academy of Sciences of the United States of America. 105: 14124-9. PMID 18768820 DOI: 10.1073/Pnas.0805968105 |
0.782 |
|
| 2008 |
Kistler AL, Gancz A, Clubb S, Skewes-Cox P, Fischer K, Sorber K, Chiu CY, Lublin A, Mechani S, Farnoushi Y, Greninger A, Wen CC, Karlene SB, Ganem D, DeRisi JL. Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent. Virology Journal. 5: 88. PMID 18671869 DOI: 10.1186/1743-422X-5-88 |
0.761 |
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