William Ernest Johnson - Publications

Affiliations: 
 
Area:
Logic
Website:
http://en.wikipedia.org/wiki/William_Ernest_Johnson

228 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Mesas A, Baldi R, González BA, Burgi V, Chávez A, Johnson WE, Marín JC. Past and Recent Effects of Livestock Activity on the Genetic Diversity and Population Structure of Native Guanaco Populations of Arid Patagonia. Animals : An Open Access Journal From Mdpi. 11. PMID 33922526 DOI: 10.3390/ani11051218  1
2021 Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... Johnson WE, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0  1
2021 Sacristán I, Acuña F, Aguilar E, García S, José López M, Cabello J, Hidalgo-Hermoso E, Sanderson J, Terio KA, Barrs V, Beatty J, Johnson WE, Millán J, Poulin E, Napolitano C. Cross-species transmission of retroviruses among domestic and wild felids in human-occupied landscapes in Chile. Evolutionary Applications. 14: 1070-1082. PMID 33897821 DOI: 10.1111/eva.13181  1
2021 Johnson LDV, Pickard MR, Johnson WEB. The Comparative Effects of Mesenchymal Stem Cell Transplantation Therapy for Spinal Cord Injury in Humans and Animal Models: A Systematic Review and Meta-Analysis. Biology. 10. PMID 33809684 DOI: 10.3390/biology10030230  1
2021 Wood CR, Juárez EH, Ferrini F, Myint P, Innes J, Lossi L, Merighi A, Johnson WEB. Mesenchymal stem cell conditioned medium increases glial reactivity and decreases neuronal survival in spinal cord slice cultures. Biochemistry and Biophysics Reports. 26: 100976. PMID 33718633 DOI: 10.1016/j.bbrep.2021.100976  1
2020 Sheard JJ, Southam AS, Mackay HL, Ellington MA, Snow MD, Khanim F, Bunce CM, Johnson WE. Combined bezafibrate, medroxyprogesterone acetate and valproic acid treatment inhibits osteosarcoma cell growth without adversely affecting normal mesenchymal stem cells. Bioscience Reports. PMID 33289496 DOI: 10.1042/BSR20202505  1
2020 Barnett R, Westbury MV, Sandoval-Velasco M, Vieira FG, Jeon S, Zazula G, Martin MD, Ho SYW, Mather N, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Zepeda-Mendoza ML, Antunes A, Baez AC, ... Johnson WE, et al. Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens. Current Biology : Cb. PMID 33065008 DOI: 10.1016/j.cub.2020.09.051  1
2020 Delfi IRTA, Wood CR, Johnson LDV, Snow MD, Innes JF, Myint P, Johnson WEB. An In Vitro Comparison of the Neurotrophic and Angiogenic Activity of Human and Canine Adipose-Derived Mesenchymal Stem Cells (MSCs): Translating MSC-Based Therapies for Spinal Cord Injury. Biomolecules. 10. PMID 32916959 DOI: 10.3390/biom10091301  1
2020 Ruan QT, Yazdani N, Reed ER, Beierle JA, Peterson LP, Luttik KP, Szumlinski KK, Johnson WE, Ash PEA, Wolozin B, Bryant CD. 5' UTR variants in the quantitative trait gene Hnrnph1 support reduced 5' UTR usage and hnRNP H protein as a molecular mechanism underlying reduced methamphetamine sensitivity. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 32401417 DOI: 10.1096/Fj.202000092R  1
2020 de Manuel M, Barnett R, Sandoval-Velasco M, Yamaguchi N, Garrett Vieira F, Zepeda Mendoza ML, Liu S, Martin MD, Sinding MS, Mak SST, Carøe C, Liu S, Guo C, Zheng J, Zazula G, ... Johnson WE, et al. The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences of the United States of America. PMID 32366643 DOI: 10.1073/Pnas.1919423117  1
2020 Babbs RK, Beierle JA, Yao EJ, Kelliher JC, Medeiros AR, Anandakumar J, Shah AA, Chen MM, Johnson WE, Bryant CD. The effect of the demyelinating agent cuprizone on binge-like eating of sweetened palatable food in female and male C57BL/6 substrains. Appetite. 104678. PMID 32209386 DOI: 10.1016/j.appet.2020.104678  1
2019 González BA, Agapito AM, Novoa-Muñoz F, Vianna J, Johnson WE, Marín JC. Utility of genetic variation in coat color genes to distinguish wild, domestic and hybrid South American camelids for forensic and judicial applications. Forensic Science International. Genetics. 45: 102226. PMID 31884178 DOI: 10.1016/j.fsigen.2019.102226  1
2019 Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, et al. Author Correction: Puma genomes from North and South America provide insights into the genomic consequences of inbreeding. Nature Communications. 10: 5276. PMID 31754100 DOI: 10.1038/S41467-019-13096-3  1
2019 Sacristán I, Acuña F, Aguilar E, García S, López MJ, Cevidanes A, Cabello J, Hidalgo-Hermoso E, Johnson WE, Poulin E, Millán J, Napolitano C. Assessing cross-species transmission of hemoplasmas at the wild-domestic felid interface in Chile using genetic and landscape variables analysis. Scientific Reports. 9: 16816. PMID 31727935 DOI: 10.1038/s41598-019-53184-4  1
2019 Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, et al. Puma genomes from North and South America provide insights into the genomic consequences of inbreeding. Nature Communications. 10: 4769. PMID 31628318 DOI: 10.1038/S41467-019-12741-1  1
2019 Borges R, Fonseca J, Gomes C, Johnson WE, O'brien SJ, Zhang G, Gilbert MTP, Jarvis ED, Antunes A. Avian binocularity and adaptation to nocturnal environments: genomic insights from a highly-derived visual phenotype. Genome Biology and Evolution. PMID 31386143 DOI: 10.1093/Gbe/Evz111  1
2019 Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Vaz Pinto P, ... Johnson WE, et al. Whole Genome Sequencing and Re-sequencing of the Sable Antelope (): A Resource for Monitoring Diversity in and Populations. G3 (Bethesda, Md.). PMID 31000506 DOI: 10.1534/G3.119.400084  1
2019 Kohli N, Al-Delfi IRT, Snow M, Sakamoto T, Miyazaki T, Nakajima H, Uchida K, Johnson WEB. CD271-selected mesenchymal stem cells from adipose tissue enhance cartilage repair and are less angiogenic than plastic adherent mesenchymal stem cells. Scientific Reports. 9: 3194. PMID 30816233 DOI: 10.1038/s41598-019-39715-z  1
2019 Farré M, Kim J, Proskuryakova AA, Zhang Y, Kulemzina AI, Li Q, Zhou Y, Xiong Y, Johnson JL, Perelman P, Johnson WE, Warren WC, Kukekova AV, Zhang G, O'Brien SJ, et al. Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks. Genome Research. PMID 30760546 DOI: 10.1101/Gr.239863.118  1
2019 Bryant CD, Bagdas D, Goldberg LR, Khalefa T, Reed ER, Kirkpatrick SL, Kelliiher JC, Chen MM, Johnson WE, Mulligan MK, Damaj MI. C57BL/6 substrain differences in inflammatory and neuropathic nociception and genetic mapping of a major quantitative trait locus underlying acute thermal nociception. Molecular Pain. 1744806918825046. PMID 30632432 DOI: 10.1177/1744806918825046  1
2018 Marín JC, Rivera R, Varas V, Cortés J, Agapito A, Chero A, Chávez A, Johnson WE, Orozco-terWengel P. Genetic Variation in Coat Colour Genes and Provides Insights Into Domestication and Management of South American Camelids. Frontiers in Genetics. 9: 487. PMID 30483307 DOI: 10.3389/fgene.2018.00487  1
2018 Takahashi A, Nakajima H, Uchida K, Takeura N, Honjoh K, Watanabe S, Kitade M, Kokubo Y, Johnson WEB, Matsumine A. Comparison of Mesenchymal Stromal Cells Isolated from Murine Adipose Tissue and Bone Marrow in the Treatment of Spinal Cord Injury. Cell Transplantation. 963689718780309. PMID 29947256 DOI: 10.1177/0963689718780309  1
2018 Lewin HA, Robinson GE, Kress WJ, Baker WJ, Coddington J, Crandall KA, Durbin R, Edwards SV, Forest F, Gilbert MTP, Goldstein MM, Grigoriev IV, Hackett KJ, Haussler D, Jarvis ED, Johnson WE, et al. Earth BioGenome Project: Sequencing life for the future of life. Proceedings of the National Academy of Sciences of the United States of America. 115: 4325-4333. PMID 29686065 DOI: 10.1073/Pnas.1720115115  1
2018 Wood CR, Al Delfi IRT, Innes JF, Myint P, Johnson WEB. Exposing mesenchymal stem cells to chondroitin sulphated proteoglycans reduces their angiogenic and neuro-adhesive paracrine activity. Biochimie. PMID 29680669 DOI: 10.1016/j.biochi.2018.04.011  1
2018 Borges R, Johnson WE, O'Brien SJ, Gomes C, Heesy CP, Antunes A. Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments. Bmc Genomics. 19: 121. PMID 29402215 DOI: 10.1186/S12864-017-4417-8  1
2017 Gaubert P, Antunes A, Meng H, Miao L, Peigné S, Justy F, Njiokou F, Dufour S, Danquah E, Alahakoon J, Verheyen E, Stanley WT, O'Brien SJ, Johnson WE, Luo SJ. The complete phylogeny of pangolins: scaling up resources for the molecular tracing of the most trafficked mammals on Earth. The Journal of Heredity. PMID 29140441 DOI: 10.1093/Jhered/Esx097  1
2017 O'Brien SJ, Johnson WE, Driscoll CA, Dobrynin P, Marker L. Conservation Genetics of the Cheetah: Lessons Learned and New Opportunities. The Journal of Heredity. 108: 671-677. PMID 28821181 DOI: 10.1093/Jhered/Esx047  1
2017 Marín JC, Romero K, Rivera R, Johnson WE, González BA. Y-chromosome and mtDNA variation confirms independent domestications and directional hybridization in South American camelids. Animal Genetics. PMID 28699276 DOI: 10.1111/age.12570  1
2016 Tan TK, Tan KY, Hari R, Mohamed Yusoff A, Wong GJ, Siow CC, Mutha NV, Rayko M, Komissarov A, Dobrynin P, Krasheninnikova K, Tamazian G, Paterson IC, Warren WC, Johnson WE, et al. PGD: a pangolin genome hub for the research community. Database : the Journal of Biological Databases and Curation. 2016. PMID 27616775 DOI: 10.1093/Database/Baw063  1
2016 Machado JP, Philip S, Maldonado E, O'Brien SJ, Johnson WE, Antunes A. Positive selection linked with generation of novel mammalian dentition patterns. Genome Biology and Evolution. PMID 27613398 DOI: 10.1093/Gbe/Evw200  1
2016 Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko A, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli KP, Minx P, Krasheninnikova K, ... Johnson WE, et al. Pangolin genomes and the evolution of mammalian scales and immunity. Genome Research. PMID 27510566 DOI: 10.1101/Gr.203521.115  1
2016 Tchaicka L, Freitas TR, Bager A, Vidal SL, Lucherini M, Iriarte A, Novaro A, Geffen E, Garcez FS, Johnson WE, Wayne RK, Eizirik E. Molecular assessment of the phylogeny and biogeography of a recently diversified endemic group of South American canids (Mammalia: Carnivora: Canidae). Genetics and Molecular Biology. 0. PMID 27459260 DOI: 10.1590/1678-4685-GMB-2015-0189  1
2016 Machado JP, Johnson WE, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Antunes A. Bone-associated gene evolution and the origin of flight in birds. Bmc Genomics. 17: 371. PMID 27193938 DOI: 10.1186/S12864-016-2681-7  1
2016 O'Brien SJ, Koepfli KP, Eizirik E, Johnson W, Driscoll C, Antunes A, Schmidt-Kuntzel A, Marker L, Dobrynin P. Response to Comment by Faurby, Werdelin and Svenning. Genome Biology. 17: 90. PMID 27150130 DOI: 10.1186/S13059-016-0942-Z  1
2016 Almeida D, Maldonado E, Khan I, Silva L, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Johnson WE, Antunes A. Whole genome identification, phylogeny and evolution of the cytochrome P450 family 2 (CYP2) sub-families in birds. Genome Biology and Evolution. PMID 26979796 DOI: 10.1093/Gbe/Evw041  1
2016 Begum S, Johnson WE, Worthington T, Martin RA. The influence of pH and fluid dynamics on the antibacterial efficacy of 45S5 Bioglass. Biomedical Materials (Bristol, England). 11: 015006. PMID 26836582 DOI: 10.1088/1748-6041/11/1/015006  1
2016 Lee MY, Lee SM, Song EG, An JH, Voloshina I, Chong JR, Johnson WE, Min MS, Lee H. Phylogenetic relationships and genetic diversity of badgers from the Korean Peninsula: Implications for the taxonomic status of the Korean badger Biochemical Systematics and Ecology. 69: 18-26. DOI: 10.1016/j.bse.2016.07.015  1
2015 Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel M, Godinez R, Komissarov A, et al. Genomic legacy of the African cheetah, Acinonyx jubatus. Genome Biology. 16: 277. PMID 26653294 DOI: 10.1186/S13059-015-0837-4  1
2015 Land AM, Wang J, Law EK, Aberle R, Kirmaier A, Krupp A, Johnson WE, Harris RS. Degradation of the cancer genomic DNA deaminase APOBEC3B by SIV Vif. Oncotarget. PMID 26544511 DOI: 10.18632/Oncotarget.5483  1
2015 Piccolo SR, Andrulis IL, Cohen AL, Conner T, Moos PJ, Spira AE, Buys SS, Johnson WE, Bild AH. Gene-expression patterns in peripheral blood classify familial breast cancer susceptibility. Bmc Medical Genomics. 8: 72. PMID 26538066 DOI: 10.1186/s12920-015-0145-6  1
2015 Shah DJ, Rohlfing F, Anand S, Johnson WE, Alvarez MT, Cobell J, King J, Young SA, Kauwe JS, Graves SW. Discovery and Subsequent Confirmation of Novel Serum Biomarkers Diagnosing Alzheimer's Disease. Journal of Alzheimer's Disease : Jad. PMID 26484917 DOI: 10.3233/Jad-150498  1
2015 Borges R, Khan I, Johnson WE, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Antunes A. Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds. Bmc Genomics. 16: 751. PMID 26438339 DOI: 10.1186/S12864-015-1924-3  1
2015 Kohli N, Wright KT, Sammons RL, Jeys L, Snow M, Johnson WE. An In Vitro Comparison of the Incorporation, Growth, and Chondrogenic Potential of Human Bone Marrow versus Adipose Tissue Mesenchymal Stem Cells in Clinically Relevant Cell Scaffolds Used for Cartilage Repair. Cartilage. 6: 252-63. PMID 26425263 DOI: 10.1177/1947603515589650  1
2015 Watanabe M, Meyer KA, Jackson TM, Schock TB, Johnson WE, Bearden DW. Application of NMR-based metabolomics for environmental assessment in the Great Lakes using zebra mussel (Dreissena polymorpha). Metabolomics : Official Journal of the Metabolomic Society. 11: 1302-1315. PMID 26366138 DOI: 10.1007/s11306-015-0789-4  0.01
2015 McCarthy KR, Kirmaier A, Autissier P, Johnson WE. Evolutionary and Functional Analysis of Old World Primate TRIM5 Reveals the Ancient Emergence of Primate Lentiviruses and Convergent Evolution Targeting a Conserved Capsid Interface. Plos Pathogens. 11: e1005085. PMID 26291613 DOI: 10.1371/Journal.Ppat.1005085  1
2015 Castro-Nallar E, Shen Y, Freishtat RJ, Pérez-Losada M, Manimaran S, Liu G, Johnson WE, Crandall KA. Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities. Bmc Medical Genomics. 8: 50. PMID 26277095 DOI: 10.1186/S12920-015-0121-1  1
2015 Napolitano C, Díaz D, Sanderson J, Johnson WE, Ritland K, Ritland CE, Poulin E. Reduced Genetic Diversity and Increased Dispersal in Guigna (Leopardus guigna) in Chilean Fragmented Landscapes. The Journal of Heredity. 106: 522-36. PMID 26245787 DOI: 10.1093/jhered/esv025  1
2015 Koepfli KP, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, ... Johnson WE, et al. Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species. Current Biology : Cb. 25: 2158-65. PMID 26234211 DOI: 10.1016/J.Cub.2015.06.060  1
2015 Khan I, Yang Z, Maldonado E, Li C, Zhang G, Gilbert MT, Jarvis ED, O'Brien SJ, Johnson WE, Antunes A. Olfactory receptor subgenomes linked with broad ecological adaptations in Sauropsida. Molecular Biology and Evolution. PMID 26219582 DOI: 10.1093/Molbev/Msv155  1
2015 Rahman M, Jackson LK, Johnson WE, Li DY, Bild AH, Piccolo SR. Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results. Bioinformatics (Oxford, England). 31: 3666-72. PMID 26209429 DOI: 10.1093/bioinformatics/btv377  1
2015 Walter MN, Kohli N, Khan N, Major T, Fuller H, Wright KT, Kuiper JH, Johnson WE. Human mesenchymal stem cells stimulate EaHy926 endothelial cell migration: combined proteomic and in vitro analysis of the influence of donor-donor variability. Journal of Stem Cells & Regenerative Medicine. 11: 18-24. PMID 26195891  1
2015 MacNeil SM, Johnson WE, Li DY, Piccolo SR, Bild AH. Inferring pathway dysregulation in cancers from multiple types of omic data. Genome Medicine. 7: 61. PMID 26170901 DOI: 10.1186/s13073-015-0189-4  1
2015 Anand S, Bench Alvarez TM, Johnson WE, Esplin MS, Merrell K, Porter TF, Graves SW. Serum biomarkers predictive of pre-eclampsia. Biomarkers in Medicine. 9: 563-75. PMID 26079961 DOI: 10.2217/Bmm.15.21  1
2015 Watanabe S, Uchida K, Nakajima H, Matsuo H, Sugita D, Yoshida A, Honjoh K, Johnson WE, Baba H. Early transplantation of mesenchymal stem cells after spinal cord injury relieves pain hypersensitivity through suppression of pain-related signaling cascades and reduced inflammatory cell recruitment. Stem Cells (Dayton, Ohio). 33: 1902-14. PMID 25809552 DOI: 10.1002/stem.2006  1
2015 Whipple JM, Youssef OA, Aruscavage PJ, Nix DA, Hong C, Johnson WE, Bass BL. Genome-wide profiling of the C. elegans dsRNAome. Rna (New York, N.Y.). 21: 786-800. PMID 25805852 DOI: 10.1261/Rna.048801.114  1
2015 Grubaugh ND, Sharma S, Krajacich BJ, Fakoli Iii LS, Bolay FK, Diclaro Ii JW, Johnson WE, Ebel GD, Foy BD, Brackney DE. Xenosurveillance: a novel mosquito-based approach for examining the human-pathogen landscape. Plos Neglected Tropical Diseases. 9: e0003628. PMID 25775236 DOI: 10.1371/journal.pntd.0003628  1
2015 Mortenson JB, Heppler LN, Banks CJ, Weerasekara VK, Whited MD, Piccolo SR, Johnson WE, Thompson JW, Andersen JL. Histone deacetylase 6 (HDAC6) promotes the pro-survival activity of 14-3-3ζ via deacetylation of lysines within the 14-3-3ζ binding pocket. The Journal of Biological Chemistry. 290: 12487-96. PMID 25770209 DOI: 10.1074/jbc.M114.607580  1
2015 Castro-Nallar E, Hasan NA, Cebula TA, Colwell RR, Robison RA, Johnson WE, Crandall KA. Concordance and discordance of sequence survey methods for molecular epidemiology. Peerj. 3: e761. PMID 25737810 DOI: 10.7717/Peerj.761  1
2015 Shen Y, Rahman M, Piccolo SR, Gusenleitner D, El-Chaar NN, Cheng L, Monti S, Bild AH, Johnson WE. ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways. Bioinformatics (Oxford, England). 31: 1745-53. PMID 25617415 DOI: 10.1093/bioinformatics/btv031  1
2015 Baginsky C, Brito B, Scherson R, Pertuzé R, Seguel O, Cañete A, Araneda C, Johnson WE. Genetic diversity of Rhizobium from nodulating beans grown in a variety of Mediterranean climate soils of Chile. Archives of Microbiology. 197: 419-29. PMID 25533847 DOI: 10.1007/s00203-014-1067-y  0.01
2015 Campbell JD, Liu G, Luo L, Xiao J, Gerrein J, Juan-Guardela B, Tedrow J, Alekseyev YO, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba F, Schwartz DA, Kaminski N, Johnson WE, et al. Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data. Rna (New York, N.Y.). 21: 164-71. PMID 25519487 DOI: 10.1261/Rna.046060.114  1
2015 Wai HA, Kawakami K, Wada H, Müller F, Vernallis AB, Brown G, Johnson WE. The development and growth of tissues derived from cranial neural crest and primitive mesoderm is dependent on the ligation status of retinoic acid receptor γ: evidence that retinoic acid receptor γ functions to maintain stem/progenitor cells in the absence of retinoic acid. Stem Cells and Development. 24: 507-19. PMID 25233141 DOI: 10.1089/Scd.2014.0235  1
2014 Kirmaier A, Krupp A, Johnson WE. Understanding restriction factors and intrinsic immunity: insights and lessons from the primate lentiviruses. Future Virology. 9: 483-497. PMID 26543491 DOI: 10.2217/Fvl.14.25  1
2014 Hong C, Manimaran S, Johnson WE. PathoQC: Computationally Efficient Read Preprocessing and Quality Control for High-Throughput Sequencing Data Sets. Cancer Informatics. 13: 167-76. PMID 25983538 DOI: 10.4137/Cin.S13890  1
2014 Avila F, Baily MP, Perelman P, Das PJ, Pontius J, Chowdhary R, Owens E, Johnson WE, Merriwether DA, Raudsepp T. A comprehensive whole-genome integrated cytogenetic map for the alpaca (Lama pacos). Cytogenetic and Genome Research. 144: 196-207. PMID 25662411 DOI: 10.1159/000370329  1
2014 Pereira J, Johnson WE, O'Brien SJ, Jarvis ED, Zhang G, Gilbert MT, Vasconcelos V, Antunes A. Evolutionary genomics and adaptive evolution of the Hedgehog gene family (Shh, Ihh and Dhh) in vertebrates. Plos One. 9: e74132. PMID 25549322 DOI: 10.1371/Journal.Pone.0074132  1
2014 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, ... Johnson W, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/Science.1253451  1
2014 Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, ... Johnson WE, et al. Comparative genomics reveals insights into avian genome evolution and adaptation. Science (New York, N.Y.). 346: 1311-20. PMID 25504712 DOI: 10.1126/Science.1251385  1
2014 Shamsaddini A, Pan Y, Johnson WE, Krampis K, Shcheglovitova M, Simonyan V, Zanne A, Mazumder R. Census-based rapid and accurate metagenome taxonomic profiling. Bmc Genomics. 15: 918. PMID 25336203 DOI: 10.1186/1471-2164-15-918  0.01
2014 Johnson WE. Camelid genetics and reproductive biotechnologies. The Journal of Heredity. 105: 837-8. PMID 25326629 DOI: 10.1093/jhered/esu069  1
2014 Lakhashe SK, Byrareddy SN, Zhou M, Bachler BC, Hemashettar G, Hu SL, Villinger F, Else JG, Stock S, Lee SJ, Vargas-Inchaustegui DA, Cofano EB, Robert-Guroff M, Johnson WE, Polonis VR, et al. Multimodality vaccination against clade C SHIV: partial protection against mucosal challenges with a heterologous tier 2 virus. Vaccine. 32: 6527-36. PMID 25245933 DOI: 10.1016/J.Vaccine.2014.08.065  1
2014 Hong C, Manimaran S, Shen Y, Perez-Rogers JF, Byrd AL, Castro-Nallar E, Crandall KA, Johnson WE. PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples. Microbiome. 2: 33. PMID 25225611 DOI: 10.1186/2049-2618-2-33  1
2014 Khan I, Maldonado E, Vasconcelos V, O'Brien SJ, Johnson WE, Antunes A. Mammalian keratin associated proteins (KRTAPs) subgenomes: disentangling hair diversity and adaptation to terrestrial and aquatic environments. Bmc Genomics. 15: 779. PMID 25208914 DOI: 10.1186/1471-2164-15-779  1
2014 Gerdisch MW, Boyd WD, Harlan JL, Richardson JB, Flack JE, Palafox BA, Johnson WE, Sun B, Lee R, Guy TS, Gang GI, Cox JL, Rao V. Early experience treating tricuspid valve endocarditis with a novel extracellular matrix cylinder reconstruction. The Journal of Thoracic and Cardiovascular Surgery. 148: 3042-8. PMID 25175957 DOI: 10.1016/j.jtcvs.2014.06.092  1
2014 Kirmaier A, Johnson WE. Monkey-adapted HIV-1 highlights in vivo significance of restriction factors. Trends in Microbiology. 22: 486-7. PMID 25127418 DOI: 10.1016/J.Tim.2014.07.006  1
2014 Johnson WE, Koepfli K. The role of genomics in conservation and reproductive sciences. Advances in Experimental Medicine and Biology. 753: 71-96. PMID 25091907 DOI: 10.1007/978-1-4939-0820-2_5  1
2014 Byrd AL, Perez-Rogers JF, Manimaran S, Castro-Nallar E, Toma I, McCaffrey T, Siegel M, Benson G, Crandall KA, Johnson WE. Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data. Bmc Bioinformatics. 15: 262. PMID 25091138 DOI: 10.1186/1471-2105-15-262  1
2014 Uchida K, Nakajima H, Guerrero AR, Johnson WE, Masri WE, Baba H. Gene therapy strategies for the treatment of spinal cord injury. Therapeutic Delivery. 5: 591-607. PMID 24998276 DOI: 10.4155/tde.14.20  1
2014 Walters-Conte KB, Johnson DL, Johnson WE, O'Brien SJ, Pecon-Slattery J. The dynamic proliferation of CanSINEs mirrors the complex evolution of Feliforms. Bmc Evolutionary Biology. 14: 137. PMID 24947429 DOI: 10.1186/1471-2148-14-137  1
2014 McCarthy KR, Johnson WE. Plastic proteins and monkey blocks: how lentiviruses evolved to replicate in the presence of primate restriction factors. Plos Pathogens. 10: e1004017. PMID 24743473 DOI: 10.1371/Journal.Ppat.1004017  1
2014 González BA, Orozco-Terwengel P, von Borries R, Johnson WE, Franklin WL, Marín JC. Maintenance of genetic diversity in an introduced island population of guanacos after seven decades and two severe demographic bottlenecks: implications for camelid conservation. Plos One. 9: e91714. PMID 24663026 DOI: 10.1371/journal.pone.0091714  0.01
2014 Edwards M, Jacob AP, Kimbrough KL, Davenport E, Johnson WE. Assessment of trace elements and legacy contaminant concentrations in California mussels (Mytilus spp.): relationship to land use and outfalls. Marine Pollution Bulletin. 81: 325-33. PMID 24655943 DOI: 10.1016/j.marpolbul.2014.02.030  1
2014 Luo SJ, Zhang Y, Johnson WE, Miao L, Martelli P, Antunes A, Smith JL, O'Brien SJ. Sympatric Asian felid phylogeography reveals a major Indochinese-Sundaic divergence. Molecular Ecology. 23: 2072-92. PMID 24629132 DOI: 10.1111/Mec.12716  1
2014 Wright KT, Uchida K, Bara JJ, Roberts S, El Masri W, Johnson WE. Spinal motor neurite outgrowth over glial scar inhibitors is enhanced by coculture with bone marrow stromal cells. The Spine Journal : Official Journal of the North American Spine Society. 14: 1722-33. PMID 24462452 DOI: 10.1016/j.spinee.2014.01.021  1
2014 Sholukh AM, Byrareddy SN, Shanmuganathan V, Hemashettar G, Lakhashe SK, Rasmussen RA, Watkins JD, Vyas HK, Thorat S, Brandstoetter T, Mukhtar MM, Yoon JK, Novembre FJ, Villinger F, Landucci G, ... Johnson WE, et al. Passive immunization of macaques with polyclonal anti-SHIV IgG against a heterologous tier 2 SHIV: outcome depends on IgG dose. Retrovirology. 11: 8. PMID 24444350 DOI: 10.1186/1742-4690-11-8  1
2014 Bild AH, Chang JT, Johnson WE, Piccolo SR. A field guide to genomics research. Plos Biology. 12: e1001744. PMID 24409093 DOI: 10.1371/Journal.Pbio.1001744  1
2014 Henzy JE, Gifford RJ, Johnson WE, Coffin JM. A novel recombinant retrovirus in the genomes of modern birds combines features of avian and mammalian retroviruses. Journal of Virology. 88: 2398-405. PMID 24352464 DOI: 10.1128/Jvi.02863-13  1
2014 Bara JJ, McCarthy HE, Humphrey E, Johnson WE, Roberts S. Bone marrow-derived mesenchymal stem cells become antiangiogenic when chondrogenically or osteogenically differentiated: implications for bone and cartilage tissue engineering. Tissue Engineering. Part A. 20: 147-59. PMID 23895198 DOI: 10.1089/ten.TEA.2013.0196  1
2014 Jackling FC, Johnson WE, Appleton BR. The genetic inheritance of the blue-eyed white phenotype in alpacas (Vicugna pacos). The Journal of Heredity. 105: 847-57. PMID 23144493 DOI: 10.1093/jhered/ess093  1
2014 Avila F, Das PJ, Kutzler M, Owens E, Perelman P, Rubes J, Hornak M, Johnson WE, Raudsepp T. Development and application of camelid molecular cytogenetic tools. The Journal of Heredity. 105: 858-69. PMID 23109720 DOI: 10.1093/jhered/ess067  1
2014 Napolitano C, Johnson WE, Sanderson J, O'Brien SJ, Rus Hoelzel A, Freer R, Dunstone N, Ritland K, Ritland CE, Poulin E. Phylogeography and population history of Leopardus guigna, the smallest American felid Conservation Genetics. 15: 631-653. DOI: 10.1007/S10592-014-0566-3  1
2013 Matte EM, Castilho CS, Miotto RA, Sana DA, Johnson WE, O'Brien SJ, de Freitas TR, Eizirik E. Molecular evidence for a recent demographic expansion in the puma (Puma concolor) (Mammalia, Felidae). Genetics and Molecular Biology. 36: 586-97. PMID 24385863 DOI: 10.1590/S1415-47572013000400018  1
2013 Hong C, Clement NL, Clement S, Hammoud SS, Carrell DT, Cairns BR, Snell Q, Clement MJ, Johnson WE. Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data. Bmc Bioinformatics. 14: 337. PMID 24261665 DOI: 10.1186/1471-2105-14-337  1
2013 Piccolo SR, Withers MR, Francis OE, Bild AH, Johnson WE. Multiplatform single-sample estimates of transcriptional activation. Proceedings of the National Academy of Sciences of the United States of America. 110: 17778-83. PMID 24128763 DOI: 10.1073/pnas.1305823110  1
2013 Byrareddy SN, Ayash-Rashkovsky M, Kramer VG, Lee SJ, Correll M, Novembre FJ, Villinger F, Johnson WE, von Gegerfelt A, Felber BK, Ruprecht RM. Live attenuated Rev-independent Nef¯SIV enhances acquisition of heterologous SIVsmE660 in acutely vaccinated rhesus macaques. Plos One. 8: e75556. PMID 24098702 DOI: 10.1371/Journal.Pone.0075556  1
2013 Krupp A, McCarthy KR, Ooms M, Letko M, Morgan JS, Simon V, Johnson WE. APOBEC3G polymorphism as a selective barrier to cross-species transmission and emergence of pathogenic SIV and AIDS in a primate host. Plos Pathogens. 9: e1003641. PMID 24098115 DOI: 10.1371/Journal.Ppat.1003641  1
2013 Cohen AL, Piccolo SR, Cheng L, Soldi R, Han B, Johnson WE, Bild AH. Genomic pathway analysis reveals that EZH2 and HDAC4 represent mutually exclusive epigenetic pathways across human cancers. Bmc Medical Genomics. 6: 35. PMID 24079712 DOI: 10.1186/1755-8794-6-35  1
2013 Cho YS, Hu L, Hou H, Lee H, Xu J, Kwon S, Oh S, Kim HM, Jho S, Kim S, Shin YA, Kim BC, Kim H, Kim CU, Luo SJ, Johnson WE, et al. The tiger genome and comparative analysis with lion and snow leopard genomes. Nature Communications. 4: 2433. PMID 24045858 DOI: 10.1038/Ncomms3433  1
2013 Tan Y, Uchida K, Nakajima H, Guerrero AR, Watanabe S, Hirai T, Takeura N, Liu SY, Johnson WE, Baba H. Blockade of interleukin 6 signaling improves the survival rate of transplanted bone marrow stromal cells and increases locomotor function in mice with spinal cord injury. Journal of Neuropathology and Experimental Neurology. 72: 980-93. PMID 24042200 DOI: 10.1097/NEN.0b013e3182a79de9  1
2013 Henzy JE, Johnson WE. Pushing the endogenous envelope. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120506. PMID 23938755 DOI: 10.1098/Rstb.2012.0506  1
2013 Francis OE, Bendall M, Manimaran S, Hong C, Clement NL, Castro-Nallar E, Snell Q, Schaalje GB, Clement MJ, Crandall KA, Johnson WE. Pathoscope: species identification and strain attribution with unassembled sequencing data. Genome Research. 23: 1721-9. PMID 23843222 DOI: 10.1101/Gr.150151.112  1
2013 Hirai T, Uchida K, Nakajima H, Guerrero AR, Takeura N, Watanabe S, Sugita D, Yoshida A, Johnson WE, Baba H. The prevalence and phenotype of activated microglia/macrophages within the spinal cord of the hyperostotic mouse (twy/twy) changes in response to chronic progressive spinal cord compression: implications for human cervical compressive myelopathy. Plos One. 8: e64528. PMID 23717624 DOI: 10.1371/journal.pone.0064528  1
2013 Johnson WE. Rapid adversarial co-evolution of viruses and cellular restriction factors. Current Topics in Microbiology and Immunology. 371: 123-51. PMID 23686234 DOI: 10.1007/978-3-642-37765-5_5  1
2013 McCarthy KR, Schmidt AG, Kirmaier A, Wyand AL, Newman RM, Johnson WE. Gain-of-sensitivity mutations in a Trim5-resistant primary isolate of pathogenic SIV identify two independent conserved determinants of Trim5α specificity. Plos Pathogens. 9: e1003352. PMID 23675300 DOI: 10.1371/Journal.Ppat.1003352  1
2013 O'Rawe J, Jiang T, Sun G, Wu Y, Wang W, Hu J, Bodily P, Tian L, Hakonarson H, Johnson WE, Wei Z, Wang K, Lyon GJ. Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome Medicine. 5: 28. PMID 23537139 DOI: 10.1186/Gm432  1
2013 Diehl WE, Johnson WE, Hunter E. Elevated rate of fixation of endogenous retroviral elements in Haplorhini TRIM5 and TRIM22 genomic sequences: impact on transcriptional regulation. Plos One. 8: e58532. PMID 23516500 DOI: 10.1371/Journal.Pone.0058532  1
2013 Butler K, Morgan JS, Hanson DL, Adams D, Garcia-Lerma JG, Heneine W, Ellenberger D, Hendry RM, McNicholl J, Johnson WE, Kersh EN. Susceptibility to repeated, low-dose, rectal SHIVSF162P3 challenge is independent of TRIM5 genotype in rhesus macaques. Aids Research and Human Retroviruses. 29: 1091-4. PMID 23461569 DOI: 10.1089/Aid.2012.0383  1
2013 Woolstenhulme CJ, Parajuli S, Healey DW, Valverde DP, Petersen EN, Starosta AL, Guydosh NR, Johnson WE, Wilson DN, Buskirk AR. Nascent peptides that block protein synthesis in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 110: E878-87. PMID 23431150 DOI: 10.1073/Pnas.1219536110  1
2013 Marin JC, González BA, Poulin E, Casey CS, Johnson WE. The influence of the arid Andean high plateau on the phylogeography and population genetics of guanaco (Lama guanicoe) in South America. Molecular Ecology. 22: 463-82. PMID 23206254 DOI: 10.1111/mec.12111  1
2012 Wong PB, Wiley EO, Johnson WE, Ryder OA, O'Brien SJ, Haussler D, Koepfli KP, Houck ML, Perelman P, Mastromonaco G, Bentley AC, Venkatesh B, Zhang YP, Murphy RW. Tissue sampling methods and standards for vertebrate genomics. Gigascience. 1: 8. PMID 23587255 DOI: 10.1186/2047-217X-1-8  1
2012 Borges R, Johnson WE, O'Brien SJ, Vasconcelos V, Antunes A. The role of gene duplication and unconstrained selective pressures in the melanopsin gene family evolution and vertebrate circadian rhythm regulation. Plos One. 7: e52413. PMID 23285031 DOI: 10.1371/Journal.Pone.0052413  1
2012 Schneider A, David VA, Johnson WE, O'Brien SJ, Barsh GS, Menotti-Raymond M, Eizirik E. How the leopard hides its spots: ASIP mutations and melanism in wild cats. Plos One. 7: e50386. PMID 23251368 DOI: 10.1371/Journal.Pone.0050386  1
2012 Piccolo SR, Sun Y, Campbell JD, Lenburg ME, Bild AH, Johnson WE. A single-sample microarray normalization method to facilitate personalized-medicine workflows. Genomics. 100: 337-44. PMID 22959562 DOI: 10.1016/J.Ygeno.2012.08.003  1
2012 Philip S, Machado JP, Maldonado E, Vasconcelos V, O'Brien SJ, Johnson WE, Antunes A. Fish lateral line innovation: insights into the evolutionary genomic dynamics of a unique mechanosensory organ. Molecular Biology and Evolution. 29: 3887-98. PMID 22844072 DOI: 10.1093/Molbev/Mss194  1
2012 Warf MB, Shepherd BA, Johnson WE, Bass BL. Effects of ADARs on small RNA processing pathways in C. elegans. Genome Research. 22: 1488-98. PMID 22673872 DOI: 10.1101/Gr.134841.111  1
2012 Uchida K, Nakajima H, Hirai T, Yayama T, Chen K, Guerrero AR, Johnson WE, Baba H. The retrograde delivery of adenovirus vector carrying the gene for brain-derived neurotrophic factor protects neurons and oligodendrocytes from apoptosis in the chronically compressed spinal cord of twy/twy mice. Spine. 37: 2125-35. PMID 22648027 DOI: 10.1097/BRS.0b013e3182600ef7  1
2012 Reding DM, Bronikowski AM, Johnson WE, Clark WR. Pleistocene and ecological effects on continental-scale genetic differentiation in the bobcat (Lynx rufus). Molecular Ecology. 21: 3078-93. PMID 22548482 DOI: 10.1111/J.1365-294X.2012.05595.X  1
2012 Telenti A, Johnson WE. Host genes important to HIV replication and evolution. Cold Spring Harbor Perspectives in Medicine. 2: a007203. PMID 22474614 DOI: 10.1101/Cshperspect.A007203  1
2012 O'Brien SJ, Troyer JL, Brown MA, Johnson WE, Antunes A, Roelke ME, Pecon-Slattery J. Emerging viruses in the Felidae: shifting paradigms. Viruses. 4: 236-57. PMID 22470834 DOI: 10.3390/V4020236  1
2012 Guerrero AR, Uchida K, Nakajima H, Watanabe S, Nakamura M, Johnson WE, Baba H. Blockade of interleukin-6 signaling inhibits the classic pathway and promotes an alternative pathway of macrophage activation after spinal cord injury in mice. Journal of Neuroinflammation. 9: 40. PMID 22369693 DOI: 10.1186/1742-2094-9-40  1
2012 Sunagar K, Johnson WE, O'Brien SJ, Vasconcelos V, Antunes A. Evolution of CRISPs associated with toxicoferan-reptilian venom and mammalian reproduction. Molecular Biology and Evolution. 29: 1807-22. PMID 22319140 DOI: 10.1093/Molbev/Mss058  1
2012 Leek JT, Johnson WE, Parker HS, Jaffe AE, Storey JD. The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinformatics (Oxford, England). 28: 882-3. PMID 22257669 DOI: 10.1093/Bioinformatics/Bts034  1
2012 Nakajima H, Uchida K, Guerrero AR, Watanabe S, Sugita D, Takeura N, Yoshida A, Long G, Wright KT, Johnson WE, Baba H. Transplantation of mesenchymal stem cells promotes an alternative pathway of macrophage activation and functional recovery after spinal cord injury. Journal of Neurotrauma. 29: 1614-25. PMID 22233298 DOI: 10.1089/neu.2011.2109  1
2012 Lai L, Kwa SF, Kozlowski PA, Montefiori DC, Nolen TL, Hudgens MG, Johnson WE, Ferrari G, Hirsch VM, Felber BK, Pavlakis GN, Earl PL, Moss B, Amara RR, Robinson HL. SIVmac239 MVA vaccine with and without a DNA prime, similar prevention of infection by a repeated dose SIVsmE660 challenge despite different immune responses. Vaccine. 30: 1737-45. PMID 22178526 DOI: 10.1016/J.Vaccine.2011.12.026  1
2012 Bara JJ, Johnson WE, Caterson B, Roberts S. Articular cartilage glycosaminoglycans inhibit the adhesion of endothelial cells. Connective Tissue Research. 53: 220-8. PMID 22141582 DOI: 10.3109/03008207.2011.629310  1
2012 Rathinakumar R, Dutta M, Zhu P, Johnson WE, Roux KH. Binding of anti-membrane-proximal gp41 monoclonal antibodies to CD4-liganded and -unliganded human immunodeficiency virus type 1 and simian immunodeficiency virus virions. Journal of Virology. 86: 1820-31. PMID 22090143 DOI: 10.1128/Jvi.05489-11  1
2012 Uchida K, Nakajima H, Watanabe S, Yayama T, Guerrero AR, Inukai T, Hirai T, Sugita D, Johnson WE, Baba H. Apoptosis of neurons and oligodendrocytes in the spinal cord of spinal hyperostotic mouse (twy/twy): possible pathomechanism of human cervical compressive myelopathy. European Spine Journal : Official Publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society. 21: 490-7. PMID 21935678 DOI: 10.1007/s00586-011-2025-x  1
2012 Uchida K, Yayama T, Sugita D, Nakajima H, Rodriguez Guerrero A, Watanabe S, Roberts S, Johnson WE, Baba H. Initiation and progression of ossification of the posterior longitudinal ligament of the cervical spine in the hereditary spinal hyperostotic mouse (twy/twy). European Spine Journal : Official Publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society. 21: 149-55. PMID 21850419 DOI: 10.1007/s00586-011-1971-7  1
2012 Hostetler JA, Onorato DP, Bolker BM, Johnson WE, O'Brien SJ, Jansen D, Oli MK. Does genetic introgression improve female reproductive performance? A test on the endangered Florida panther. Oecologia. 168: 289-300. PMID 21805300 DOI: 10.1007/S00442-011-2083-0  1
2011 Clement NL, Clement MJ, Snell Q, Johnson WE. Parallel Mapping Approaches for GNUMAP. Ipdps ... / International Parallel and Distributed Processing Symposium. Ipdps (Conference). 435-443. PMID 23396612  1
2011 Lilly AJ, Johnson WE, Bunce CM. The haematopoietic stem cell niche: new insights into the mechanisms regulating haematopoietic stem cell behaviour. Stem Cells International. 2011: 274564. PMID 22135682 DOI: 10.4061/2011/274564  1
2011 Machado JP, Johnson WE, O'Brien SJ, Vasconcelos V, Antunes A. Adaptive evolution of the matrix extracellular phosphoglycoprotein in mammals. Bmc Evolutionary Biology. 11: 342. PMID 22103247 DOI: 10.1186/1471-2148-11-342  1
2011 Johnson WE, Hendrickson SL. AGA President's Symposium 2011: the application of genomics to biodiversity. The Journal of Heredity. 102: 782-3. PMID 22013020 DOI: 10.1093/jhered/esr106  1
2011 Stephan S, Johnson WE, Roberts S. The influence of nutrient supply and cell density on the growth and survival of intervertebral disc cells in 3D culture. European Cells & Materials. 22: 97-108. PMID 21892804  1
2011 Reed DL, Currier RW, Walton SF, Conrad M, Sullivan SA, Carlton JM, Read TD, Severini A, Tyler S, Eberle R, Johnson WE, Silvestri G, Clarke IN, Lagergård T, Lukehart SA, et al. The evolution of infectious agents in relation to sex in animals and humans: brief discussions of some individual organisms. Annals of the New York Academy of Sciences. 1230: 74-107. PMID 21824167 DOI: 10.1111/J.1749-6632.2011.06133.X  1
2011 Lyon GJ, Jiang T, Van Wijk R, Wang W, Bodily PM, Xing J, Tian L, Robison RJ, Clement M, Lin Y, Zhang P, Liu Y, Moore B, Glessner JT, Elia J, ... ... Johnson WE, et al. Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications. Discovery Medicine. 12: 41-55. PMID 21794208  1
2011 Reynolds MR, Sacha JB, Weiler AM, Borchardt GJ, Glidden CE, Sheppard NC, Norante FA, Castrovinci PA, Harris JJ, Robertson HT, Friedrich TC, McDermott AB, Wilson NA, Allison DB, Koff WC, ... Johnson WE, et al. The TRIM5{alpha} genotype of rhesus macaques affects acquisition of simian immunodeficiency virus SIVsmE660 infection after repeated limiting-dose intrarectal challenge. Journal of Virology. 85: 9637-40. PMID 21734037 DOI: 10.1128/Jvi.05074-11  1
2011 Wright KT, El Masri W, Osman A, Chowdhury J, Johnson WE. Concise review: Bone marrow for the treatment of spinal cord injury: mechanisms and clinical applications. Stem Cells (Dayton, Ohio). 29: 169-78. PMID 21732476 DOI: 10.1002/stem.570  1
2011 Rope AF, Wang K, Evjenth R, Xing J, Johnston JJ, Swensen JJ, Johnson WE, Moore B, Huff CD, Bird LM, Carey JC, Opitz JM, Stevens CA, Jiang T, Schank C, et al. Using VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency. American Journal of Human Genetics. 89: 28-43. PMID 21700266 DOI: 10.1016/J.Ajhg.2011.05.017  1
2011 Lakhashe SK, Velu V, Sciaranghella G, Siddappa NB, Dipasquale JM, Hemashettar G, Yoon JK, Rasmussen RA, Yang F, Lee SJ, Montefiori DC, Novembre FJ, Villinger F, Amara RR, Kahn M, ... ... Johnson WE, et al. Prime-boost vaccination with heterologous live vectors encoding SIV gag and multimeric HIV-1 gp160 protein: efficacy against repeated mucosal R5 clade C SHIV challenges. Vaccine. 29: 5611-22. PMID 21693155 DOI: 10.1016/J.Vaccine.2011.06.017  1
2011 Fofana IB, Colantonio AD, Reeves RK, Connole MA, Gillis JM, Hall LR, Sato S, Audin CR, Evans DT, Shida H, Johnson RP, Johnson WE. Flow cytometry based identification of simian immunodeficiency virus Env-specific B lymphocytes. Journal of Immunological Methods. 370: 75-85. PMID 21689659 DOI: 10.1016/J.Jim.2011.05.010  1
2011 Lai L, Kwa S, Kozlowski PA, Montefiori DC, Ferrari G, Johnson WE, Hirsch V, Villinger F, Chennareddi L, Earl PL, Moss B, Amara RR, Robinson HL. Prevention of infection by a granulocyte-macrophage colony-stimulating factor co-expressing DNA/modified vaccinia Ankara simian immunodeficiency virus vaccine. The Journal of Infectious Diseases. 204: 164-73. PMID 21628671 DOI: 10.1093/Infdis/Jir199  1
2011 Gokcumen O, Babb PL, Iskow RC, Zhu Q, Shi X, Mills RE, Ionita-Laza I, Vallender EJ, Clark AG, Johnson WE, Lee C. Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection. Genome Biology. 12: R52. PMID 21627829 DOI: 10.1186/Gb-2011-12-5-R52  1
2011 Schell JB, Rose NF, Bahl K, Diller K, Buonocore L, Hunter M, Marx PA, Gambhira R, Tang H, Montefiori DC, Johnson WE, Rose JK. Significant protection against high-dose simian immunodeficiency virus challenge conferred by a new prime-boost vaccine regimen. Journal of Virology. 85: 5764-72. PMID 21490100 DOI: 10.1128/Jvi.00342-11  0.01
2011 Perelman P, Johnson WE, Roos C, Seuánez HN, Horvath JE, Moreira MA, Kessing B, Pontius J, Roelke M, Rumpler Y, Schneider MP, Silva A, O'Brien SJ, Pecon-Slattery J. A molecular phylogeny of living primates. Plos Genetics. 7: e1001342. PMID 21436896 DOI: 10.1371/Journal.Pgen.1001342  1
2011 Benson JF, Hostetler JA, Onorato DP, Johnson WE, Roelke ME, O'Brien SJ, Jansen D, Oli MK. Intentional genetic introgression influences survival of adults and subadults in a small, inbred felid population. The Journal of Animal Ecology. 80: 958-67. PMID 21338353 DOI: 10.1111/J.1365-2656.2011.01809.X  1
2011 Warf MB, Johnson WE, Bass BL. Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer. Rna (New York, N.Y.). 17: 563-77. PMID 21307183 DOI: 10.1261/Rna.2432311  1
2011 Lindau ST, Makelarski JA, Chin MH, Desautels S, Johnson D, Johnson WE, Miller D, Peters S, Robinson C, Schneider J, Thicklin F, Watson NP, Wolfe M, Whitaker E. Building community-engaged health research and discovery infrastructure on the South Side of Chicago: science in service to community priorities. Preventive Medicine. 52: 200-7. PMID 21236295 DOI: 10.1016/J.Ypmed.2011.01.001  1
2010 Luo SJ, Johnson WE, O'Brien SJ. Applying molecular genetic tools to tiger conservation. Integrative Zoology. 5: 351-62. PMID 21392353 DOI: 10.1111/J.1749-4877.2010.00222.X  1
2010 Johnson WE. Endless forms most viral. Plos Genetics. 6: e1001210. PMID 21124950 DOI: 10.1371/Journal.Pgen.1001210  1
2010 Hostetler JA, Onorato DP, Nichols JD, Johnson WE, Roelke ME, O'Brien SJ, Jansen D, Oli MK. Genetic Introgression and the Survival of Florida Panther Kittens. Biological Conservation. 143: 2789-2796. PMID 21113436 DOI: 10.1016/J.Biocon.2010.07.028  1
2010 Boyd WD, Johnson WE, Sultan PK, Deering TF, Matheny RG. Pericardial reconstruction using an extracellular matrix implant correlates with reduced risk of postoperative atrial fibrillation in coronary artery bypass surgery patients. The Heart Surgery Forum. 13: E311-6. PMID 20961831 DOI: 10.1532/HSF98.20091184  0.01
2010 Johnson WE, Onorato DP, Roelke ME, Land ED, Cunningham M, Belden RC, McBride R, Jansen D, Lotz M, Shindle D, Howard J, Wildt DE, Penfold LM, Hostetler JA, Oli MK, et al. Genetic restoration of the Florida panther. Science (New York, N.Y.). 329: 1641-5. PMID 20929847 DOI: 10.1126/Science.1192891  1
2010 Thyagarajan B, Blaszczak AG, Chandler KJ, Watts JL, Johnson WE, Graves BJ. ETS-4 is a transcriptional regulator of life span in Caenorhabditis elegans. Plos Genetics. 6: e1001125. PMID 20862312 DOI: 10.1371/Journal.Pgen.1001125  1
2010 Rai K, Sarkar S, Broadbent TJ, Voas M, Grossmann KF, Nadauld LD, Dehghanizadeh S, Hagos FT, Li Y, Toth RK, Chidester S, Bahr TM, Johnson WE, Sklow B, Burt R, et al. DNA demethylase activity maintains intestinal cells in an undifferentiated state following loss of APC. Cell. 142: 930-42. PMID 20850014 DOI: 10.1016/J.Cell.2010.08.030  1
2010 da Fonseca RR, Johnson WE, O'Brien SJ, Vasconcelos V, Antunes A. Molecular evolution and the role of oxidative stress in the expansion and functional diversification of cytosolic glutathione transferases. Bmc Evolutionary Biology. 10: 281. PMID 20843339 DOI: 10.1186/1471-2148-10-281  1
2010 Johnson WE, Hillyard SD, Propper CR. Plasma and brain angiotensin concentrations associated with water response behavior in the desert anuran, Scaphiopus couchii under natural conditions in the field. Comparative Biochemistry and Physiology. Part a, Molecular & Integrative Physiology. 157: 377-81. PMID 20708705 DOI: 10.1016/j.cbpa.2010.08.009  1
2010 Uchida K, Nakajima H, Hirai T, Yayama T, Chen KB, Kobayashi S, Roberts S, Johnson WE, Baba H. Microarray analysis of expression of cell death-associated genes in rat spinal cord cells exposed to cyclic tensile stresses in vitro. Bmc Neuroscience. 11: 84. PMID 20663127 DOI: 10.1186/1471-2202-11-84  1
2010 Wright KT, Griffiths GJ, Johnson WE. A comparison of high-content screening versus manual analysis to assay the effects of mesenchymal stem cell-conditioned medium on neurite outgrowth in vitro. Journal of Biomolecular Screening. 15: 576-82. PMID 20400727 DOI: 10.1177/1087057110367959  1
2010 Eizirik E, Murphy WJ, Koepfli KP, Johnson WE, Dragoo JW, Wayne RK, O'Brien SJ. Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences. Molecular Phylogenetics and Evolution. 56: 49-63. PMID 20138220 DOI: 10.1016/J.Ympev.2010.01.033  1
2010 Johnson WE, Onorato DP, Roelke ME, Land ED, O'Brien SJ. Genetic Future for Florida Panthers—Response Science. 330: 1744-1744. DOI: 10.1126/Science.330.6012.1744-B  1
2009 Bajada S, Marshall MJ, Wright KT, Richardson JB, Johnson WE. Decreased osteogenesis, increased cell senescence and elevated Dickkopf-1 secretion in human fracture non union stromal cells. Bone. 45: 726-35. PMID 19540374 DOI: 10.1016/j.bone.2009.06.015  1
2009 Li X, Glaser D, Li W, Johnson WE, O'Brien SJ, Beauchamp GK, Brand JG. Analyses of sweet receptor gene (Tas1r2) and preference for sweet stimuli in species of Carnivora. The Journal of Heredity. 100: S90-100. PMID 19366814 DOI: 10.1093/Jhered/Esp015  1
2009 Haussler D, O'Brien SJ, Ryder OA, Keith Barker F, Clamp M, Crawford AJ, Hanner R, Hanotte O, Johnson WE, McGuire JA, Miller W, Murphy RW, Murphy WJ, Sheldon FH, Sinervo B, et al. Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species Journal of Heredity. 100: 659-674. DOI: 10.1093/Jhered/Esp086  1
2009 Sarno RJ, González BA, Bonacic C, Zapata B, O’Brien SJ, Johnson WE. Molecular genetic evidence for social group disruption of wild vicuñas Vicugna vicugna captured for wool harvest in Chile Small Ruminant Research. 84: 28-34. DOI: 10.1016/J.Smallrumres.2009.05.001  1
2008 Roelke ME, Johnson WE, Millán J, Palomares F, Revilla E, Rodríguez A, Calzada J, Ferreras P, León-Vizcaíno L, Delibes M, O'Brien SJ. Exposure to disease agents in the endangered Iberian lynx (). European Journal of Wildlife Research. 54: 171-178. PMID 32214935 DOI: 10.1007/S10344-007-0122-2  1
2008 DA Fontoura-Rodrigues ML, Lima-Rosa CA, Tchaicka L, Valdez FP, Rodrigues FH, DE Paula RC, Gough MP, Johnson WE, Bonatto SL, Eizirik E. Cross-amplification and characterization of 13 tetranucleotide microsatellites in multiple species of Neotropical canids. Molecular Ecology Resources. 8: 898-900. PMID 21585923 DOI: 10.1111/J.1755-0998.2008.02103.X  1
2008 Antunes A, Troyer JL, Roelke ME, Pecon-Slattery J, Packer C, Winterbach C, Winterbach H, Hemson G, Frank L, Stander P, Siefert L, Driciru M, Funston PJ, Alexander KA, Prager KC, ... Johnson WE, et al. The evolutionary dynamics of the lion Panthera leo revealed by host and viral population genomics. Plos Genetics. 4: e1000251. PMID 18989457 DOI: 10.1371/Journal.Pgen.1000251  1
2008 Trigo TC, Freitas TR, Kunzler G, Cardoso L, Silva JC, Johnson WE, O'Brien SJ, Bonatto SL, Eizirik E. Inter-species hybridization among Neotropical cats of the genus Leopardus, and evidence for an introgressive hybrid zone between L. geoffroyi and L. tigrinus in southern Brazil. Molecular Ecology. 17: 4317-33. PMID 18785898 DOI: 10.1111/J.1365-294X.2008.03919.X  1
2008 O'Brien SJ, Johnson W, Driscoll C, Pontius J, Pecon-Slattery J, Menotti-Raymond M. State of cat genomics. Trends in Genetics : Tig. 24: 268-79. PMID 18471926 DOI: 10.1016/J.Tig.2008.03.004  1
2008 Johnson WE, Stephan S, Roberts S. The influence of serum, glucose and oxygen on intervertebral disc cell growth in vitro: implications for degenerative disc disease. Arthritis Research & Therapy. 10: R46. PMID 18433481 DOI: 10.1186/ar2405  1
2008 Luo SJ, Johnson WE, Martenson J, Antunes A, Martelli P, Uphyrkina O, Traylor-Holzer K, Smith JL, O'Brien SJ. Subspecies genetic assignments of worldwide captive tigers increase conservation value of captive populations. Current Biology : Cb. 18: 592-6. PMID 18424146 DOI: 10.1016/J.Cub.2008.03.053  1
2008 Pecon-Slattery J, Troyer JL, Johnson WE, O'Brien SJ. Evolution of feline immunodeficiency virus in Felidae: implications for human health and wildlife ecology. Veterinary Immunology and Immunopathology. 123: 32-44. PMID 18359092 DOI: 10.1016/J.Vetimm.2008.01.010  1
2008 da Fonseca RR, Johnson WE, O'Brien SJ, Ramos MJ, Antunes A. The adaptive evolution of the mammalian mitochondrial genome. Bmc Genomics. 9: 119. PMID 18318906 DOI: 10.1186/1471-2164-9-119  1
2008 Troyer JL, Vandewoude S, Pecon-Slattery J, McIntosh C, Franklin S, Antunes A, Johnson W, O'Brien SJ. FIV cross-species transmission: an evolutionary prospective. Veterinary Immunology and Immunopathology. 123: 159-66. PMID 18299153 DOI: 10.1016/J.Vetimm.2008.01.023  1
2008 Brown MA, Cunningham MW, Roca AL, Troyer JL, Johnson WE, O'Brien SJ. Genetic characterization of feline leukemia virus from Florida panthers. Emerging Infectious Diseases. 14: 252-9. PMID 18258118 DOI: 10.3201/Eid1402.070981  1
2008 Napolitano C, Bennett M, Johnson WE, O'Brien SJ, Marquet PA, Barría I, Poulin E, Iriarte A. Ecological and biogeographical inferences on two sympatric and enigmatic Andean cat species using genetic identification of faecal samples. Molecular Ecology. 17: 678-90. PMID 18205675 DOI: 10.1111/J.1365-294X.2007.03606.X  1
2008 Marker LL, Pearks Wilkerson AJ, Sarno RJ, Martenson J, Breitenmoser-Würsten C, O'Brien SJ, Johnson WE. Molecular genetic insights on cheetah (Acinonyx jubatus) ecology and conservation in Namibia. The Journal of Heredity. 99: 2-13. PMID 17982159 DOI: 10.1093/Jhered/Esm081  1
2008 Menotti-Raymond M, David VA, Pflueger SM, Lindblad-Toh K, Wade CM, O'Brien SJ, Johnson WE. Patterns of molecular genetic variation among cat breeds. Genomics. 91: 1-11. PMID 17964115 DOI: 10.1016/J.Ygeno.2007.08.008  1
2007 Gannett DE, Wolf RF, Takahashi GW, Louie J, Wagner RC, Ey FS, Owens MM, Johnson WE, Cook DW, Alberty RE. Neoadjuvant chemoradiotherapy for esophageal cancer using weekly Paclitaxel and Carboplatin plus infusional 5-Fluorouracil. Gastrointestinal Cancer Research : Gcr. 1: 132-8. PMID 19262701  0.01
2007 Pontius JU, Mullikin JC, Smith DR, Lindblad-Toh K, Gnerre S, Clamp M, Chang J, Stephens R, Neelam B, Volfovsky N, Schäffer AA, Agarwala R, Narfström K, Murphy WJ, ... Johnson WE, et al. Initial sequence and comparative analysis of the cat genome. Genome Research. 17: 1675-89. PMID 17975172 DOI: 10.1101/Gr.6380007  1
2007 Antunes A, Pontius J, Ramos MJ, O'Brien SJ, Johnson WE. Mitochondrial introgressions into the nuclear genome of the domestic cat. The Journal of Heredity. 98: 414-20. PMID 17660503 DOI: 10.1093/Jhered/Esm062  1
2007 Luo SJ, Johnson WE, David VA, Menotti-Raymond M, Stanyon R, Cai QX, Beck T, Yuhki N, Pecon-Slattery J, Smith JL, O'Brien SJ. Development of Y chromosome intraspecific polymorphic markers in the Felidae. The Journal of Heredity. 98: 400-13. PMID 17646273 DOI: 10.1093/Jhered/Esm063  1
2007 Driscoll CA, Menotti-Raymond M, Roca AL, Hupe K, Johnson WE, Geffen E, Harley EH, Delibes M, Pontier D, Kitchener AC, Yamaguchi N, O'brien SJ, Macdonald DW. The Near Eastern origin of cat domestication. Science (New York, N.Y.). 317: 519-23. PMID 17600185 DOI: 10.1126/Science.1139518  1
2007 Johnson WE, Patterson AM, Eisenstein SM, Roberts S. The presence of pleiotrophin in the human intervertebral disc is associated with increased vascularization: an immunohistologic study. Spine. 32: 1295-302. PMID 17515817 DOI: 10.1097/BRS.0b013e31805b835d  1
2007 Wright KT, El Masri W, Osman A, Roberts S, Chamberlain G, Ashton BA, Johnson WE. Bone marrow stromal cells stimulate neurite outgrowth over neural proteoglycans (CSPG), myelin associated glycoprotein and Nogo-A. Biochemical and Biophysical Research Communications. 354: 559-66. PMID 17234155 DOI: 10.1016/j.bbrc.2007.01.013  1
2007 Luo SJ, Cai QX, David VA, Zhang L, Martelli P, Lim NTL, Ferrand N, Chin SC, Gaubert P, Ramos MJ, O'Brien SJ, Antunes A, Johnson WE. Isolation and characterization of microsatellite markers in pangolins (Mammalia, Pholidota, Manis spp.): Primer note Molecular Ecology Notes. 7: 269-272. DOI: 10.1111/J.1471-8286.2006.01577.X  1
2006 Buckley-Beason VA, Johnson WE, Nash WG, Stanyon R, Menninger JC, Driscoll CA, Howard J, Bush M, Page JE, Roelke ME, Stone G, Martelli PP, Wen C, Ling L, Duraisingam RK, et al. Molecular evidence for species-level distinctions in clouded leopards. Current Biology : Cb. 16: 2371-6. PMID 17141620 DOI: 10.1016/J.Cub.2006.08.066  1
2006 Johnson WE, Wootton A, El Haj A, Eisenstein SM, Curtis AS, Roberts S. Topographical guidance of intervertebral disc cell growth in vitro: towards the development of tissue repair strategies for the anulus fibrosus. European Spine Journal : Official Publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society. 15: S389-96. PMID 16688474 DOI: 10.1007/s00586-006-0125-9  1
2006 Johnson WE, Sivan S, Wright KT, Eisenstein SM, Maroudas A, Roberts S. Human intervertebral disc cells promote nerve growth over substrata of human intervertebral disc aggrecan. Spine. 31: 1187-93. PMID 16688030 DOI: 10.1097/01.brs.0000217669.04903.61  1
2006 Baldwin AL, Primeau RL, Johnson WE. Effect of noise on the morphology of the intestinal mucosa in laboratory rats. Journal of the American Association For Laboratory Animal Science : Jaalas. 45: 74-82. PMID 16539340  1
2006 Antunes A, Faria R, Johnson WE, Guyomard R, Alexandrino P. Life on the edge: the long-term persistence and contrasting spatial genetic structure of distinct brown trout life histories at their ecological limits. The Journal of Heredity. 97: 193-205. PMID 16489148 DOI: 10.1093/jhered/esj014  1
2006 Johnson WE, Eizirik E, Pecon-Slattery J, Murphy WJ, Antunes A, Teeling E, O'Brien SJ. The late Miocene radiation of modern Felidae: a genetic assessment. Science (New York, N.Y.). 311: 73-7. PMID 16400146 DOI: 10.1126/Science.1122277  1
2006 Kim JH, Antunes A, Luo SJ, Menninger J, Nash WG, O'Brien SJ, Johnson WE. Evolutionary analysis of a large mtDNA translocation (numt) into the nuclear genome of the Panthera genus species. Gene. 366: 292-302. PMID 16380222 DOI: 10.1016/J.Gene.2005.08.023  1
2005 O'Brien SJ, Johnson WE. Big cat genomics. Annual Review of Genomics and Human Genetics. 6: 407-29. PMID 16124868 DOI: 10.1146/Annurev.Genom.6.080604.162151  1
2005 Troyer JL, Pecon-Slattery J, Roelke ME, Johnson W, VandeWoude S, Vazquez-Salat N, Brown M, Frank L, Woodroffe R, Winterbach C, Winterbach H, Hemson G, Bush M, Alexander KA, Revilla E, et al. Seroprevalence and genomic divergence of circulating strains of feline immunodeficiency virus among Felidae and Hyaenidae species. Journal of Virology. 79: 8282-94. PMID 15956574 DOI: 10.1128/Jvi.79.13.8282-8294.2005  1
2005 Johnson WE, Caterson B, Eisenstein SM, Roberts S. Human intervertebral disc aggrecan inhibits endothelial cell adhesion and cell migration in vitro. Spine. 30: 1139-47. PMID 15897827 DOI: 10.1097/01.brs.0000162624.95262.73  1
2004 Sepúlveda MS, Wiebe JJ, Honeyfield DC, Rauschenberger HR, Hinterkopf JP, Johnson WE, Gross TS. Organochlorine pesticides and thiamine in eggs of largemouth bass and American alligators and their relationship with early life-stage mortality. Journal of Wildlife Diseases. 40: 782-6. PMID 15650100 DOI: 10.7589/0090-3558-40.4.782  1
2004 Luo SJ, Kim JH, Johnson WE, van der Walt J, Martenson J, Yuhki N, Miquelle DG, Uphyrkina O, Goodrich JM, Quigley HB, Tilson R, Brady G, Martelli P, Subramaniam V, McDougal C, et al. Phylogeography and genetic ancestry of tigers (Panthera tigris). Plos Biology. 2: e442. PMID 15583716 DOI: 10.1371/Journal.Pbio.0020442  1
2004 Yamaguchi N, Sarno RJ, Johnson WE, O'Brien SJ, Macdonald DW. Multiple Paternity and Reproductive Tactics of Free-Ranging American Minks, Mustela vison Journal of Mammalogy. 85: 432-439. DOI: 10.1644/1383939  1
2004 Vilà C, Leonard JA, Iriarte A, O'Brien SJ, Johnson WE, Wayne RK. Detecting the vanishing populations of the highly endangered Darwin's fox, Pseudalopex fulvipes Animal Conservation. 7: 147-153. DOI: 10.1017/S1367943004001271  1
2003 Schorr-Evans EM, Poland A, Johnson WE, Pedersen NC. An epizootic of highly virulent feline calicivirus disease in a hospital setting in New England Journal of Feline Medicine and Surgery. 5: 217-226. PMID 12878149 DOI: 10.1016/S1098-612X(03)00008-1  1
2003 Eizirik E, Yuhki N, Johnson WE, Menotti-Raymond M, Hannah SS, O'Brien SJ. Molecular genetics and evolution of melanism in the cat family. Current Biology : Cb. 13: 448-53. PMID 12620197 DOI: 10.1016/S0960-9822(03)00128-3  1
2003 Swanson W, Johnson WE, Cambre R, Citino S, Quigley KB, Brousset D, Morais RN, Moreira N, O'Brien SJ, Wildt DE. Reproductive status of endemic felid species in Latin American zoos and implications for ex situ conservation Zoo Biology. 22: 421-441. DOI: 10.1002/Zoo.10093  1
2002 Johnson WE, Caterson B, Eisenstein SM, Hynds DL, Snow DM, Roberts S. Human intervertebral disc aggrecan inhibits nerve growth in vitro. Arthritis and Rheumatism. 46: 2658-64. PMID 12384924 DOI: 10.1002/Art.10585  1
2002 Sepúlveda MS, Johnson WE, Higman JC, Denslow ND, Schoeb TR, Gross TS. An evaluation of biomarkers of reproductive function and potential contaminant effects in Florida largemouth bass ( Micropterus salmoidesfloridanus) sampled from the St. Johns River. The Science of the Total Environment. 289: 133-44. PMID 12049390 DOI: 10.1016/S0048-9697(01)01029-4  1
2001 Jae-Heup K, Eizirik E, O'Brien SJ, Johnson WE. Structure and patterns of sequence variation in the mitochondrial DNA control region of the great cats. Mitochondrion. 1: 279-92. PMID 16120284 DOI: 10.1016/S1567-7249(01)00027-7  1
2001 Uphyrkina O, Johnson WE, Quigley H, Miquelle D, Marker L, Bush M, O'Brien SJ. Phylogenetics, genome diversity and origin of modern leopard, Panthera pardus. Molecular Ecology. 10: 2617-33. PMID 11883877 DOI: 10.1046/J.0962-1083.2001.01350.X  1
2001 Eizirik E, Kim JH, Menotti-Raymond M, Crawshaw PG, O'Brien SJ, Johnson WE. Phylogeography, population history and conservation genetics of jaguars (Panthera onca, Mammalia, Felidae). Molecular Ecology. 10: 65-79. PMID 11251788 DOI: 10.1046/J.1365-294X.2001.01144.X  1
2001 Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ. Molecular phylogenetics and the origins of placental mammals. Nature. 409: 614-8. PMID 11214319 DOI: 10.1038/35054550  1
2001 Lu Z, Johnson WE, Menotti-Raymond M, Yuhki N, Martenson JS, Mainka S, Shi-Qiang H, Zhihe Z, Li G, Pan W, Mao X, O'Brien SJ. Patterns of genetic diversity in remaining giant panda populations Conservation Biology. 15: 1596-1607. DOI: 10.1046/J.1523-1739.2001.00086.X  1
2001 Sarno RJ, Franklin WL, O'Brien SJ, Johnson WE. Patterns of mtDNA and microsatellite variation in an island and mainland population of guanacos in southern Chile Animal Conservation. 4: 93-101. DOI: 10.1017/S1367943001001123  1
2000 Sarno RJ, David VA, Franklin WL, O’Brien SJ, Johnson WE. Development of microsatellite markers in the guanaco, Lama guanicoe: utility for South American camelids Molecular Ecology. 9: 1922-1924. PMID 11091331 DOI: 10.1046/J.1365-294X.2000.01077-3.X  1
2000 Culver M, Johnson WE, Pecon-Slattery J, O'Brien SJ. Genomic ancestry of the American puma (Puma concolor) Journal of Heredity. 91: 186-197. PMID 10833043 DOI: 10.1093/Jhered/91.3.186  1
1999 Johnson WE, Slattery JP, Eizirik E, Kim JH, Raymond MM, Bonacic C, Cambre R, Crawshaw P, Nunes A, Seuánez HN, Moreira MA, Seymour KL, Simon F, Swanson W, O'Brien SJ. Disparate phylogeographic patterns of molecular genetic variation in four closely related South American small cat species. Molecular Ecology. 8: S79-94. PMID 10703553 DOI: 10.1046/J.1365-294X.1999.00796.X  1
1999 Sarno RJ, Clark WR, Bank MS, Prexl WS, Behl MJ, Johnson WE, Franklin WL. Juvenile guanaco survival: Management and conservation implications Journal of Applied Ecology. 36: 937-945. DOI: 10.1046/J.1365-2664.1999.00449.X  1
1999 Franklin WL, Johnson WE, Sarno RJ, Iriarte JA. Ecology of the Patagonia puma Felis concolor patagonica in southern Chile Biological Conservation. 90: 33-40. DOI: 10.1016/S0006-3207(99)00008-7  1
1998 Eizirik E, Bonatto SL, Johnson WE, Crawshaw PG, Vié JC, Brousset DM, O'Brien SJ, Salzano FM. Phylogeographic patterns and evolution of the mitochondrial DNA control region in two neotropical cats (Mammalia, felidae). Journal of Molecular Evolution. 47: 613-24. PMID 9797412 DOI: 10.1007/Pl00006418  1
1998 Johnson WE, Culver M, Iriarte JA, Eizirik E, Seymour KL, O'Brien SJ. Tracking the evolution of the elusive Andean mountain cat (Oreailurus jacobita) from mitochondrial DNA. The Journal of Heredity. 89: 227-32. PMID 9656464 DOI: 10.1093/Jhered/89.3.227  1
1997 Johnson WE, O'Brien SJ. Phylogenetic reconstruction of the felidae using 16S rRNA and NADH-5 mitochondrial genes Journal of Molecular Evolution. 44. PMID 9071018 DOI: 10.1007/Pl00000060  1
1997 Lopez JV, Culver M, Stephens JC, Johnson WE, O'Brien SJ. Rates of nuclear and cytoplasmic mitochondrial DNA sequence divergence in mammals. Molecular Biology and Evolution. 14: 277-86. PMID 9066795 DOI: 10.1093/Oxfordjournals.Molbev.A025763  1
1996 Carpenter MA, Brown EW, Culver M, Johnson WE, Pecon-Slattery J, Brousset D, O'Brien SJ. Genetic and phylogenetic divergence of feline immunodeficiency virus in the puma (Puma concolor). Journal of Virology. 70: 6682-93. PMID 8794304 DOI: 10.1128/Jvi.70.10.6682-6693.1996  1
1996 Johnson WE, Dratch PA, Martenson JS, O'Brien SJ. Resolution of Recent Radiations Within Three Evolutionary Lineages of Felidae using Mitochondrial Restriction Fragment Length Polymorphism Variation Journal of Mammalian Evolution. 3: 97-120. DOI: 10.1007/Bf01454358  1
1994 Pecon Slattery J, Johnson WE, Goldman D, O'Brien SJ. Phylogenetic reconstruction of South American felids defined by protein electrophoresis Journal of Molecular Evolution. 39: 296-305. PMID 7932791 DOI: 10.1007/Bf00160153  1
1992 Johnson WE, Franklin WL, Iriarte JA. The mammalian fauna of the northern chilean patagonia : A biogeographical dilemma Mammalia. 56: 445-458. DOI: 10.1515/mamm.1992.56.3.445  1
1990 Iriarte JA, Franklin WL, Johnson WE, Redford KH. Biogeographic variation of food habits and body size of the America puma Oecologia. 85: 185-190. DOI: 10.1007/BF00319400  1
1989 Wayne RK, Van Valkenburgh B, Kat PW, Fuller TK, Johnson WE, O'Brien SJ. Genetic and morphological divergence among sympatric canids. The Journal of Heredity. 80: 447-54. PMID 2559120 DOI: 10.1093/Oxfordjournals.Jhered.A110896  1
1974 Dreger RM, Johnson WE. Characteristics of volunteers, nonvolunteers, and no shows in a clinical follow up J.Consult.Clin.Psychol.. 42: 746-747. PMID 4427021  1
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