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Tieming Ji, Ph.D. - Publications

Affiliations: 
2012 Statistics Iowa State University, Ames, IA, United States 
Area:
Statistics, Biostatistics Biology
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Yang H, Shi X, Chen C, Hou J, Ji T, Cheng J, Birchler JA. Genomic imbalance modulates transposable element expression in maize. Plant Communications. 100467. PMID 36307986 DOI: 10.1016/j.xplc.2022.100467  0.345
2022 Shi X, Yang H, Chen C, Hou J, Ji T, Cheng J, Birchler JA. Effect of aneuploidy of a nonessential chromosome on gene expression in maize. The Plant Journal : For Cell and Molecular Biology. PMID 34997647 DOI: 10.1111/tpj.15665  0.368
2021 Shi X, Yang H, Chen C, Hou J, Hanson KM, Albert PS, Ji T, Cheng J, Birchler JA. Genomic imbalance determines positive and negative modulation of gene expression in diploid maize. The Plant Cell. PMID 33677584 DOI: 10.1093/plcell/koab030  0.363
2021 Yang H, Shi X, Chen C, Hou J, Ji T, Cheng J, Birchler JA. Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize. The Plant Cell. PMID 33656551 DOI: 10.1093/plcell/koab029  0.381
2020 Johnson AF, Hou J, Yang H, Shi X, Chen C, Islam MS, Ji T, Cheng J, Birchler JA. Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 32178980 DOI: 10.1016/J.Jgg.2020.02.002  0.497
2020 Shi X, Chen C, Yang H, Hou J, Ji T, Cheng J, Veitia RA, Birchler JA. The Gene Balance Hypothesis: Epigenetics and Dosage Effects in Plants. Methods in Molecular Biology (Clifton, N.J.). 2093: 161-171. PMID 32088896 DOI: 10.1007/978-1-0716-0179-2_12  0.484
2019 Xie J, Ji T, Ferreira MAR, Li Y, Patel BN, Rivera RM. Modeling allele-specific expression at the gene and SNP levels simultaneously by a Bayesian logistic mixed regression model. Bmc Bioinformatics. 20: 530. PMID 31660858 DOI: 10.1186/S12859-019-3141-6  0.492
2019 Zhao Z, Meihls LN, Hibbard BE, Ji T, Elsik CG, Shelby KS. Differential gene expression in response to eCry3.1Ab ingestion in an unselected and eCry3.1Ab-selected western corn rootworm (Diabrotica virgifera virgifera LeConte) population. Scientific Reports. 9: 4896. PMID 30894586 DOI: 10.1038/S41598-019-41067-7  0.414
2018 Hou J, Shi X, Chen C, Islam MS, Johnson AF, Kanno T, Huettel B, Yen MR, Hsu FM, Ji T, Chen PY, Matzke M, Matzke AJM, Cheng J, Birchler JA. Global impacts of chromosomal imbalance on gene expression in and other taxa. Proceedings of the National Academy of Sciences of the United States of America. PMID 30429332 DOI: 10.1073/Pnas.1807796115  0.532
2018 Ma C, Ji T. Detecting differentially expressed genes for syndromes by considering change in mean and dispersion simultaneously. Bmc Bioinformatics. 19: 330. PMID 30236056 DOI: 10.1186/S12859-018-2354-4  0.455
2018 Mordhorst BR, Murphy SL, Schauflinger M, Rojas Salazar S, Ji T, Behura SK, Wells KD, Green JA, Prather RS. Porcine Fetal-Derived Fibroblasts Alter Gene Expression and Mitochondria to Compensate for Hypoxic Stress During Culture. Cellular Reprogramming. 20: 225-235. PMID 30089028 DOI: 10.1089/Cell.2018.0008  0.399
2017 Chen Z, Hagen DE, Ji T, Elsik CG, Rivera RM. Global misregulation of genes largely uncoupled to DNA methylome epimutations characterizes a congenital overgrowth syndrome. Scientific Reports. 7: 12667. PMID 28978943 DOI: 10.1038/S41598-017-13012-Z  0.411
2016 Chen Z, Hagen DE, Wang J, Elsik CG, Ji T, Siqueira LG, Hansen PJ, Rivera RM. Global assessment of imprinted gene expression in the bovine conceptus by next generation sequencing. Epigenetics. 0. PMID 27245094 DOI: 10.1080/15592294.2016.1184805  0.508
2015 Ji T, Chen J. Modeling the next generation sequencing read count data for DNA copy number variant study. Statistical Applications in Genetics and Molecular Biology. PMID 26140731 DOI: 10.1515/Sagmb-2014-0054  0.301
2015 Chen Z, Hagen DE, Elsik CG, Ji T, Morris CJ, Moon LE, Rivera RM. Characterization of global loss of imprinting in fetal overgrowth syndrome induced by assisted reproduction. Proceedings of the National Academy of Sciences of the United States of America. 112: 4618-23. PMID 25825726 DOI: 10.1073/Pnas.1422088112  0.484
2015 Yan Z, Hossain MS, Arikit S, Valdés-López O, Zhai J, Wang J, Libault M, Ji T, Qiu L, Meyers BC, Stacey G. Identification of microRNAs and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j-3p in soybean nodulation. The New Phytologist. 207: 748-59. PMID 25783944 DOI: 10.1111/Nph.13365  0.317
2014 Ji T, Liu P, Nettleton D. Estimation and Testing of Gene Expression Heterosis. Journal of Agricultural, Biological, and Environmental Statistics. 19: 319-337. PMID 25435758 DOI: 10.1007/S13253-014-0173-2  0.637
2014 Schenewerk AL, Ramírez FÍ, Foote C, Ji T, Martínez-Lemus LA, Rivera RM. Effects of the use of assisted reproduction and high-caloric diet consumption on body weight and cardiovascular health of juvenile mouse offspring. Reproduction (Cambridge, England). 147: 111-23. PMID 24163396 DOI: 10.1530/Rep-13-0354  0.31
2013 Coble DJ, Sandford EE, Ji T, Abernathy J, Fleming D, Zhao H, Lamont SJ. Impacts of Salmonella enteritidis infection on liver transcriptome in broilers. Genesis (New York, N.Y. : 2000). 51: 357-64. PMID 23097340 DOI: 10.1002/Dvg.22351  0.43
2012 Ji T, Liu P, Nettleton D. Borrowing information across genes and experiments for improved error variance estimation in microarray data analysis. Statistical Applications in Genetics and Molecular Biology. 11: Article 12. PMID 22611597 DOI: 10.1515/1544-6115.1806  0.56
2011 Jovanović B, Ji T, Palić D. Gene expression of zebrafish embryos exposed to titanium dioxide nanoparticles and hydroxylated fullerenes. Ecotoxicology and Environmental Safety. 74: 1518-25. PMID 21513982 DOI: 10.1016/J.Ecoenv.2011.04.012  0.413
2009 Swanson-Wagner RA, DeCook R, Jia Y, Bancroft T, Ji T, Zhao X, Nettleton D, Schnable PS. Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science (New York, N.Y.). 326: 1118-20. PMID 19965432 DOI: 10.1126/Science.1178294  0.615
2009 Springer NM, Ying K, Fu Y, Ji T, Yeh CT, Jia Y, Wu W, Richmond T, Kitzman J, Rosenbaum H, Iniguez AL, Barbazuk WB, Jeddeloh JA, Nettleton D, Schnable PS. Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. Plos Genetics. 5: e1000734. PMID 19956538 DOI: 10.1371/Journal.Pgen.1000734  0.554
2009 Liu S, Yeh CT, Ji T, Ying K, Wu H, Tang HM, Fu Y, Nettleton D, Schnable PS. Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome. Plos Genetics. 5: e1000733. PMID 19936291 DOI: 10.1371/Journal.Pgen.1000733  0.514
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