John K. Kelly, Ph.D. - Publications

Affiliations: 
University of Kansas University of Kansas, Lawrence, KS, United States 
Area:
quantitative and population genetics, plant mating system evolution
Website:
http://www2.ku.edu/~eeb/faculty/kellyj.shtml

67 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Gibson MJS, Crawford DJ, Holder MT, Mort ME, Kerbs B, de Sequeira MM, Kelly JK. Genome-wide genotyping estimates mating system parameters and paternity in the island species Tolpis succulenta. American Journal of Botany. 107: 1189-1197. PMID 32864742 DOI: 10.1002/Ajb2.1515  0.339
2019 Brown KE, Kelly JK. Severe inbreeding depression is predicted by the "rare allele load" in Mimulus guttatus. Evolution; International Journal of Organic Evolution. PMID 31710100 DOI: 10.1111/Evo.13876  0.358
2019 Colicchio J, Monnahan PJ, Wessinger CA, Brown K, Kern JR, Kelly JK. Individualized mating system estimation using genomic data. Molecular Ecology Resources. PMID 31519042 DOI: 10.1111/1755-0998.13094  0.341
2019 Koseva BS, Hackett JL, Zhou Y, Harris BR, Kelly JK, Greenfield MD, Gleason JM, Macdonald SJ. Quantitative Genetic Mapping and Genome Assembly in the Lesser Wax Moth . G3 (Bethesda, Md.). PMID 31101652 DOI: 10.1534/G3.119.400090  0.33
2019 Flagel LE, Blackman BK, Fishman L, Monnahan PJ, Sweigart A, Kelly JK. GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity. Plos Computational Biology. 15: e1006949. PMID 30986215 DOI: 10.1371/Journal.Pcbi.1006949  0.333
2018 Kelly JK, Hughes KA. Pervasive Linked Selection and Intermediate-Frequency Alleles Are Implicated in an Evolve-and-Resequencing Experiment of . Genetics. PMID 30593495 DOI: 10.1534/Genetics.118.301824  0.381
2018 Nelson T, Monnahan P, McIntosh M, Anderson K, MacArthur-Waltz E, Finseth FR, Kelly JK, Fishman L. Extreme copy number variation at a tRNA ligase gene affecting phenology and fitness in yellow monkeyflowers. Molecular Ecology. PMID 30346101 DOI: 10.1111/Mec.14904  0.389
2018 Troth A, Puzey JR, Kim RS, Willis JH, Kelly JK. Selective trade-offs maintain alleles underpinning complex trait variation in plants. Science (New York, N.Y.). 361: 475-478. PMID 30072534 DOI: 10.1126/Science.Aat5760  0.599
2018 Wessinger CA, Kelly JK, Jiang P, Rausher MD, Hileman LC. SNP-skimming: a fast approach to map loci generating quantitative variation in natural populations. Molecular Ecology Resources. PMID 30033616 DOI: 10.1111/1755-0998.12930  0.377
2018 Wessinger CA, Kelly JK. Selfing Can Facilitate Transitions between Pollination Syndromes. The American Naturalist. 191: 582-594. PMID 29693439 DOI: 10.1086/696856  0.31
2017 Brown KE, Kelly JK. Antagonistic pleiotropy can maintain fitness variation in annual plants. Journal of Evolutionary Biology. PMID 29030895 DOI: 10.1111/Jeb.13192  0.339
2017 Koseva B, Crawford DJ, Brown KE, Mort ME, Kelly JK. The genetic breakdown of sporophytic self-incompatibility in Tolpis coronopifolia (Asteraceae). The New Phytologist. PMID 28892151 DOI: 10.1111/Nph.14759  0.324
2017 Monnahan PJ, Kelly JK. The Genomic Architecture of Flowering Time Varies Across Space and Time in Mimulus guttatus. Genetics. PMID 28455350 DOI: 10.1534/Genetics.117.201483  0.379
2016 Puzey JR, Willis JH, Kelly JK. Population structure and local selection yield high genomic variation in Mimulus guttatus. Molecular Ecology. PMID 27859786 DOI: 10.1111/Mec.13922  0.591
2016 Lee YW, Fishman L, Kelly JK, Willis JH. Fitness Variation Is Generated by a Segregating Inversion in Yellow Monkeyflower (Mimulus guttatus). Genetics. PMID 26868767 DOI: 10.1534/Genetics.115.183566  0.704
2015 Monnahan PJ, Kelly JK. Naturally segregating loci exhibit epistasis for fitness. Biology Letters. 11. PMID 26246336 DOI: 10.1098/Rsbl.2015.0498  0.399
2015 Monnahan PJ, Colicchio J, Kelly JK. A genomic selection component analysis characterizes migration-selection balance. Evolution; International Journal of Organic Evolution. PMID 26082096 DOI: 10.1111/Evo.12698  0.382
2015 Monnahan PJ, Kelly JK. Epistasis Is a Major Determinant of the Additive Genetic Variance in Mimulus guttatus. Plos Genetics. 11: e1005201. PMID 25946702 DOI: 10.1371/Journal.Pgen.1005201  0.397
2015 Mort ME, Crawford DJ, Kelly JK, Santos-Guerra A, Menezes de Sequeira M, Moura M, Caujapé-Castells J. Multiplexed-shotgun-genotyping data resolve phylogeny within a very recently derived insular lineage. American Journal of Botany. 102: 634-41. PMID 25878096 DOI: 10.3732/Ajb.1400551  0.315
2015 Fishman L, Kelly JK. Centromere-associated meiotic drive and female fitness variation in Mimulus. Evolution; International Journal of Organic Evolution. 69: 1208-18. PMID 25873401 DOI: 10.1111/Evo.12661  0.318
2014 Holeski LM, Monnahan P, Koseva B, McCool N, Lindroth RL, Kelly JK. A high-resolution genetic map of yellow monkeyflower identifies chemical defense QTLs and recombination rate variation. G3 (Bethesda, Md.). 4: 813-21. PMID 24626287 DOI: 10.1534/G3.113.010124  0.342
2014 Delph LF, Kelly JK. On the importance of balancing selection in plants. The New Phytologist. 201: 45-56. PMID 23952298 DOI: 10.1111/Nph.12441  0.379
2013 Kelly JK, Koseva B, Mojica JP. The genomic signal of partial sweeps in Mimulus guttatus. Genome Biology and Evolution. 5: 1457-69. PMID 23828880 DOI: 10.1093/Gbe/Evt100  0.787
2012 Ward JK, Samanta Roy D, Chatterjee I, Bone CR, Springer CJ, Kelly JK. Identification of a major QTL that alters flowering time at elevated [CO(2)] in Arabidopsis thaliana. Plos One. 7: e49028. PMID 23185291 DOI: 10.1371/Journal.Pone.0049028  0.335
2012 Koelling VA, Monnahan PJ, Kelly JK. A Bayesian method for the joint estimation of outcrossing rate and inbreeding depression. Heredity. 109: 393-400. PMID 22990309 DOI: 10.1038/Hdy.2012.58  0.754
2012 Mojica JP, Lee YW, Willis JH, Kelly JK. Spatially and temporally varying selection on intrapopulation quantitative trait loci for a life history trade-off in Mimulus guttatus. Molecular Ecology. 21: 3718-28. PMID 22686425 DOI: 10.1111/J.1365-294X.2012.05662.X  0.775
2012 Storz JF, Natarajan C, Cheviron ZA, Hoffmann FG, Kelly JK. Altitudinal variation at duplicated β-globin genes in deer mice: effects of selection, recombination, and gene conversion. Genetics. 190: 203-16. PMID 22042573 DOI: 10.1534/Genetics.111.134494  0.329
2011 Magwene PM, Willis JH, Kelly JK. The statistics of bulk segregant analysis using next generation sequencing. Plos Computational Biology. 7: e1002255. PMID 22072954 DOI: 10.1371/Journal.Pcbi.1002255  0.547
2011 Kelly JK, Mojica JP. Interactions among flower-size QTL of Mimulus guttatus are abundant but highly variable in nature. Genetics. 189: 1461-71. PMID 21926295 DOI: 10.1534/Genetics.111.132423  0.778
2011 Roels SA, Kelly JK. Rapid evolution caused by pollinator loss in Mimulus guttatus. Evolution; International Journal of Organic Evolution. 65: 2541-52. PMID 21884055 DOI: 10.1111/J.1558-5646.2011.01326.X  0.373
2011 Scoville AG, Lee YW, Willis JH, Kelly JK. Explaining the heritability of an ecologically significant trait in terms of individual quantitative trait loci. Biology Letters. 7: 896-8. PMID 21653565 DOI: 10.1098/Rsbl.2011.0409  0.706
2010 Mojica JP, Kelly JK. Viability selection prior to trait expression is an essential component of natural selection. Proceedings. Biological Sciences / the Royal Society. 277: 2945-50. PMID 20462906 DOI: 10.1098/Rspb.2010.0568  0.77
2010 Holeski LM, Chase-Alone R, Kelly JK. The genetics of phenotypic plasticity in plant defense: trichome production in Mimulus guttatus. The American Naturalist. 175: 391-400. PMID 20180699 DOI: 10.1086/651300  0.36
2010 Crawford DJ, Archibald JK, Kelly JK, Mort ME, Santos-Guerra A. Mixed mating in the 'obligately outcrossing'Tolpis (Asteraceae) of the Canary Islands Plant Species Biology. 25: 114-119. DOI: 10.1111/J.1442-1984.2010.00275.X  0.332
2009 Marriage TN, Kelly JK. Inbreeding depression in an asexual population of Mimulus guttatus. Journal of Evolutionary Biology. 22: 2320-31. PMID 19824930 DOI: 10.1111/J.1420-9101.2009.01848.X  0.769
2009 Storz JF, Runck AM, Sabatino SJ, Kelly JK, Ferrand N, Moriyama H, Weber RE, Fago A. Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin. Proceedings of the National Academy of Sciences of the United States of America. 106: 14450-5. PMID 19667207 DOI: 10.1073/Pnas.0905224106  0.307
2009 Scoville A, Lee YW, Willis JH, Kelly JK. Contribution of chromosomal polymorphisms to the G-matrix of Mimulus guttatus. The New Phytologist. 183: 803-15. PMID 19659590 DOI: 10.1111/J.1469-8137.2009.02947.X  0.694
2009 Marriage TN, Hudman S, Mort ME, Orive ME, Shaw RG, Kelly JK. Direct estimation of the mutation rate at dinucleotide microsatellite loci in Arabidopsis thaliana (Brassicaceae). Heredity. 103: 310-7. PMID 19513093 DOI: 10.1038/Hdy.2009.67  0.733
2009 Porcher E, Kelly JK, Cheptou PO, Eckert CG, Johnston MO, Kalisz S. The genetic consequences of fluctuating inbreeding depression and the evolution of plant selfing rates. Journal of Evolutionary Biology. 22: 708-17. PMID 19228271 DOI: 10.1111/J.1420-9101.2009.01705.X  0.33
2009 Kelly JK. Connecting QTLS to the g-matrix of evolutionary quantitative genetics. Evolution; International Journal of Organic Evolution. 63: 813-25. PMID 19087179 DOI: 10.1111/J.1558-5646.2008.00590.X  0.373
2008 Storz JF, Kelly JK. Effects of spatially varying selection on nucleotide diversity and linkage disequilibrium: insights from deer mouse globin genes. Genetics. 180: 367-79. PMID 18716337 DOI: 10.1534/Genetics.108.088732  0.365
2008 Kelly JK. Testing the rare-alleles model of quantitative variation by artificial selection. Genetica. 132: 187-98. PMID 17607507 DOI: 10.1007/S10709-007-9163-4  0.377
2008 Crawford DJ, Archibald JK, Stoermer D, Mort ME, Kelly JK, Santos-Guerra A. A test of Baker's law: Breeding systems and the radiation of Tolpis (Asteraceae) in the Canary Islands International Journal of Plant Sciences. 169: 782-791. DOI: 10.1086/533604  0.331
2007 Kelly JK. Mutation-selection balance in mixed mating populations. Journal of Theoretical Biology. 246: 355-65. PMID 17291538 DOI: 10.1016/J.Jtbi.2006.12.030  0.352
2006 Kelly JK, Tourtellot MK. The genetic analysis of family structured inbreeding depression studies. Heredity. 97: 346-54. PMID 16896343 DOI: 10.1038/Sj.Hdy.6800879  0.321
2006 Holeski LM, Kelly JK. Mating system and the evolution of quantitative traits: an experimental study of Mimulus guttatus. Evolution; International Journal of Organic Evolution. 60: 711-23. PMID 16739453 DOI: 10.1111/J.0014-3820.2006.Tb01150.X  0.405
2006 Kelly JK. Geographical variation in selection, from phenotypes to molecules. The American Naturalist. 167: 481-95. PMID 16670992 DOI: 10.1086/501167  0.368
2006 Danielson-François AM, Kelly JK, Greenfield MD. Genotype x environment interaction for male attractiveness in an acoustic moth: evidence for plasticity and canalization. Journal of Evolutionary Biology. 19: 532-42. PMID 16599929 DOI: 10.1111/J.1420-9101.2005.01006.X  0.353
2005 Kelly JK. Epistasis in monkeyflowers. Genetics. 171: 1917-31. PMID 15944350 DOI: 10.1534/Genetics.105.041525  0.368
2005 Kelly JK. Family level inbreeding depression and the evolution of plant mating systems. The New Phytologist. 165: 55-62. PMID 15720620 DOI: 10.1111/J.1469-8137.2004.01184.X  0.347
2005 Orive ME, Stearns MN, Kelly JK, Barfield M, Smith MS, Holt RD. Viral infection in internally structured hosts. I. Conditions for persistent infection. Journal of Theoretical Biology. 232: 453-66. PMID 15588629 DOI: 10.1016/J.Jtbi.2004.08.023  0.709
2005 Williamson S, Perry SM, Bustamante CD, Orive ME, Stearns MN, Kelly JK. A statistical characterization of consistent patterns of human immunodeficiency virus evolution within infected patients. Molecular Biology and Evolution. 22: 456-68. PMID 15509726 DOI: 10.1093/Molbev/Msi029  0.73
2003 Kelly JK, Williamson S, Orive ME, Smith MS, Holt RD. Linking dynamical and population genetic models of persistent viral infection. The American Naturalist. 162: 14-28. PMID 12856234 DOI: 10.1086/375543  0.738
2003 Kelly JK, Arathi HS. Inbreeding and the genetic variance in floral traits of Mimulus guttatus. Heredity. 90: 77-83. PMID 12522429 DOI: 10.1038/Sj.Hdy.6800181  0.369
2002 Kelly JK, Willis JH. A manipulative experiment to estimate biparental inbreeding in monkeyflowers International Journal of Plant Sciences. 163: 575-579. DOI: 10.1086/340735  0.589
2001 Kelly JK, Willis JH. Deleterious mutations and genetic variation for flower size in Mimulus guttatus. Evolution; International Journal of Organic Evolution. 55: 937-42. PMID 11430654 DOI: 10.1554/0014-3820(2001)055[0937:Dmagvf]2.0.Co;2  0.569
2000 Kelly JK, Williamson S. Predicting response to selection on a quantitative trait: a comparison between models for mixed-mating populations. Journal of Theoretical Biology. 207: 37-56. PMID 11027478 DOI: 10.1006/Jtbi.2000.2154  0.358
2000 Kelly JK, Wade MJ. Molecular evolution near a two-locus balanced polymorphism. Journal of Theoretical Biology. 204: 83-101. PMID 10772850 DOI: 10.1006/Jtbi.2000.2003  0.556
1999 Kelly JK. RESPONSE TO SELECTION IN PARTIALLY SELF-FERTILIZING POPULATIONS. II. SELECTION ON MULTIPLE TRAITS. Evolution; International Journal of Organic Evolution. 53: 350-357. PMID 28565428 DOI: 10.1111/J.1558-5646.1999.Tb03771.X  0.37
1999 Kelly JK. An experimental method for evaluating the contribution of deleterious mutations to quantitative trait variation. Genetical Research. 73: 263-73. PMID 10425922 DOI: 10.1017/S0016672399003766  0.38
1997 Kelly JK. FITNESS VARIATION ACROSS A SUBDIVIDED POPULATION OF THE ANNUAL PLANT IMPATIENS CAPENSIS. Evolution; International Journal of Organic Evolution. 51: 1100-1111. PMID 28565478 DOI: 10.1111/J.1558-5646.1997.Tb03957.X  0.354
1996 Kelly JK. Kin selection in the annual plant Impatiens capensis American Naturalist. 147: 899-918. DOI: 10.1086/285885  0.308
1994 Kelly JK. The effect of scale dependent processes on kin selection: mating and density regulation. Theoretical Population Biology. 46: 32-57. PMID 8079196 DOI: 10.1006/Tpbi.1994.1018  0.343
1994 Kelly JK. An application of population genetic theory to synonymous gene sequence evolution in the human immunodeficiency virus (HIV). Genetical Research. 64: 1-9. PMID 7958828 DOI: 10.1017/S0016672300032481  0.322
1994 Kelly JK. A model for the evolution of communal foraging in hierarchically structured populations Behavioral Ecology and Sociobiology. 35: 205-212. DOI: 10.1007/Bf00167961  0.347
1992 Kelly JK. RESTRICTED MIGRATION AND THE EVOLUTION OF ALTRUISM. Evolution; International Journal of Organic Evolution. 46: 1492-1495. PMID 28568999 DOI: 10.1111/J.1558-5646.1992.Tb01139.X  0.338
1992 Kelly JK. Kin selection in density regulated populations. Journal of Theoretical Biology. 157: 447-61. PMID 1460875 DOI: 10.1016/S0022-5193(05)80663-0  0.312
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