| Year |
Citation |
Score |
| 2023 |
Frazão N, Gordo I. Shared Evolutionary Path in Social Microbiomes. Molecular Biology and Evolution. 40. PMID 37402639 DOI: 10.1093/molbev/msad153 |
0.356 |
|
| 2023 |
Frazão N, Gordo I. Ecotype formation and prophage domestication during gut bacterial evolution. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2300063. PMID 37353919 DOI: 10.1002/bies.202300063 |
0.405 |
|
| 2022 |
Amicone M, Borges V, Alves MJ, Isidro J, Zé-Zé L, Duarte S, Vieira L, Guiomar R, Gomes JP, Gordo I. Mutation rate of SARS-CoV-2 and emergence of mutators during experimental evolution. Evolution, Medicine, and Public Health. 10: 142-155. PMID 35419205 DOI: 10.1093/emph/eoac010 |
0.453 |
|
| 2022 |
Gordo I. Population size matters for mutations. Nature Ecology & Evolution. 6: 353-354. PMID 35241809 DOI: 10.1038/s41559-022-01670-w |
0.417 |
|
| 2021 |
Durão P, Amicone M, Perfeito L, Gordo I. Competition dynamics in long-term propagations of strain communities. Ecology and Evolution. 11: 15085-15097. PMID 34765162 DOI: 10.1002/ece3.8191 |
0.735 |
|
| 2021 |
Amicone M, Gordo I. Molecular signatures of resource competition: Clonal interference favors ecological diversification and can lead to incipient speciation. Evolution; International Journal of Organic Evolution. PMID 34341983 DOI: 10.1111/evo.14315 |
0.465 |
|
| 2020 |
Barreto HC, Cordeiro TN, Henriques AO, Gordo I. Rampant loss of social traits during domestication of a Bacillus subtilis natural isolate. Scientific Reports. 10: 18886. PMID 33144634 DOI: 10.1038/s41598-020-76017-1 |
0.417 |
|
| 2020 |
Barreto HC, Frazão N, Sousa A, Konrad A, Gordo I. Mutation accumulation and horizontal gene transfer in colonizing the gut of old mice. Communicative & Integrative Biology. 13: 89-96. PMID 33014261 DOI: 10.1080/19420889.2020.1783059 |
0.622 |
|
| 2020 |
Leónidas Cardoso L, Durão P, Amicone M, Gordo I. Dysbiosis individualizes the fitness effect of antibiotic resistance in the mammalian gut. Nature Ecology & Evolution. PMID 32632259 DOI: 10.1038/S41559-020-1235-1 |
0.364 |
|
| 2020 |
Durão P, Ramiro RS, Pereira C, Jurič J, Pereira D, Gordo I. Radial expansion facilitates the maintenance of double antibiotic resistances. Antimicrobial Agents and Chemotherapy. PMID 32540973 DOI: 10.1128/Aac.00668-20 |
0.487 |
|
| 2020 |
Ramiro RS, Durão P, Bank C, Gordo I. Low mutational load and high mutation rate variation in gut commensal bacteria. Plos Biology. 18: e3000617. PMID 32155146 DOI: 10.1371/Journal.Pbio.3000617 |
0.608 |
|
| 2020 |
Barroso-Batista J, Pedro MF, Sales-Dias J, Pinto CJG, Thompson JA, Pereira H, Demengeot J, Gordo I, Xavier KB. Specific Eco-evolutionary Contexts in the Mouse Gut Reveal Escherichia coli Metabolic Versatility. Current Biology : Cb. PMID 32142697 DOI: 10.1016/J.Cub.2020.01.050 |
0.389 |
|
| 2020 |
Barreto HC, Sousa A, Gordo I. The Landscape of Adaptive Evolution of a Gut Commensal Bacteria in Aging Mice. Current Biology : Cb. PMID 32142696 DOI: 10.1016/J.Cub.2020.01.037 |
0.362 |
|
| 2019 |
Frazão N, Sousa A, Lässig M, Gordo I. Horizontal gene transfer overrides mutation in colonizing the mammalian gut. Proceedings of the National Academy of Sciences of the United States of America. PMID 31431529 DOI: 10.1073/Pnas.1906958116 |
0.489 |
|
| 2019 |
Gordo I. Evolutionary change in the human gut microbiome: From a static to a dynamic view. Plos Biology. 17: e3000126. PMID 30730933 DOI: 10.1371/Journal.Pbio.3000126 |
0.431 |
|
| 2018 |
Özkaya Ö, Balbontín R, Gordo I, Xavier KB. Cheating on Cheaters Stabilizes Cooperation in Pseudomonas aeruginosa. Current Biology : Cb. 28: 2070-2080.e6. PMID 30008329 DOI: 10.1016/J.Cub.2018.04.093 |
0.331 |
|
| 2018 |
Durão P, Balbontín R, Gordo I. Evolutionary Mechanisms Shaping the Maintenance of Antibiotic Resistance. Trends in Microbiology. PMID 29439838 DOI: 10.1016/J.Tim.2018.01.005 |
0.508 |
|
| 2017 |
Sousa A, Ramiro RS, Barroso-Batista J, Güleresi D, Lourenço M, Gordo I. Recurrent Reverse Evolution Maintains Polymorphism after Strong Bottlenecks in Commensal Gut Bacteria. Molecular Biology and Evolution. 34: 2879-2892. PMID 28961745 DOI: 10.1093/Molbev/Msx221 |
0.458 |
|
| 2017 |
Proença JT, Barral DC, Gordo I. Commensal-to-pathogen transition: One-single transposon insertion results in two pathoadaptive traits in Escherichia coli -macrophage interaction. Scientific Reports. 7: 4504. PMID 28674418 DOI: 10.1038/S41598-017-04081-1 |
0.375 |
|
| 2017 |
Sousa A, Frazão N, Ramiro RS, Gordo I. Evolution of commensal bacteria in the intestinal tract of mice. Current Opinion in Microbiology. 38: 114-121. PMID 28591676 DOI: 10.1016/J.Mib.2017.05.007 |
0.34 |
|
| 2017 |
Moura de Sousa J, Balbontín R, Durão P, Gordo I. Multidrug-resistant bacteria compensate for the epistasis between resistances. Plos Biology. 15: e2001741. PMID 28419091 DOI: 10.1371/Journal.Pbio.2001741 |
0.451 |
|
| 2016 |
Lourenço M, Ramiro RS, Güleresi D, Barroso-Batista J, Xavier KB, Gordo I, Sousa A. A Mutational Hotspot and Strong Selection Contribute to the Order of Mutations Selected for during Escherichia coli Adaptation to the Gut. Plos Genetics. 12: e1006420. PMID 27812114 DOI: 10.1371/Journal.Pgen.1006420 |
0.612 |
|
| 2016 |
Ramiro RS, Costa H, Gordo I. Macrophage adaptation leads to parallel evolution of genetically diverse Escherichia coli small-colony variants with increased fitness in vivo and antibiotic collateral sensitivity. Evolutionary Applications. 9: 994-1004. PMID 27606007 DOI: 10.1111/Eva.12397 |
0.449 |
|
| 2016 |
Moura de Sousa JA, Alpedrinha J, Campos PR, Gordo I. Competition and fixation of cohorts of adaptive mutations under Fisher geometrical model. Peerj. 4: e2256. PMID 27547562 DOI: 10.7717/Peerj.2256 |
0.595 |
|
| 2016 |
Durão P, Güleresi D, Proença J, Gordo I. Enhanced survival of Rifampicin and Streptomycin double resistant E. coli inside macrophages. Antimicrobial Agents and Chemotherapy. PMID 27161646 DOI: 10.1128/Aac.00624-16 |
0.41 |
|
| 2016 |
Azevedo M, Sousa A, Moura de Sousa J, Thompson JA, Proença JT, Gordo I. Trade-Offs of Escherichia coli Adaptation to an Intracellular Lifestyle in Macrophages. Plos One. 11: e0146123. PMID 26752723 DOI: 10.1371/Journal.Pone.0146123 |
0.52 |
|
| 2015 |
Barroso-Batista J, Demengeot J, Gordo I. Adaptive immunity increases the pace and predictability of evolutionary change in commensal gut bacteria. Nature Communications. 6: 8945. PMID 26615893 DOI: 10.1038/Ncomms9945 |
0.361 |
|
| 2015 |
Durão P, Trindade S, Sousa A, Gordo I. Multiple Resistance at No Cost: Rifampicin and Streptomycin a Dangerous Liaison in the Spread of Antibiotic Resistance. Molecular Biology and Evolution. 32: 2675-80. PMID 26130082 DOI: 10.1093/Molbev/Msv143 |
0.515 |
|
| 2014 |
Miskinyte M, Gordo I. Fitness Measurements of Evolved Escherichia coli. Bio-Protocol. 4. PMID 29104882 DOI: 10.21769/BioProtoc.1228 |
0.352 |
|
| 2014 |
Barroso-Batista J, Sousa A, Lourenço M, Bergman ML, Sobral D, Demengeot J, Xavier KB, Gordo I. The first steps of adaptation of Escherichia coli to the gut are dominated by soft sweeps. Plos Genetics. 10: e1004182. PMID 24603313 DOI: 10.1371/Journal.Pgen.1004182 |
0.609 |
|
| 2014 |
Perfeito L, Sousa A, Bataillon T, Gordo I. Rates of fitness decline and rebound suggest pervasive epistasis. Evolution; International Journal of Organic Evolution. 68: 150-62. PMID 24372601 DOI: 10.1111/Evo.12234 |
0.809 |
|
| 2013 |
Miskinyte M, Sousa A, Ramiro RS, de Sousa JA, Kotlinowski J, Caramalho I, Magalhães S, Soares MP, Gordo I. The genetic basis of Escherichia coli pathoadaptation to macrophages. Plos Pathogens. 9: e1003802. PMID 24348252 DOI: 10.1371/Journal.Ppat.1003802 |
0.399 |
|
| 2013 |
Sousa A, Bourgard C, Wahl LM, Gordo I. Rates of transposition in Escherichia coli. Biology Letters. 9: 20130838. PMID 24307531 DOI: 10.1098/Rsbl.2013.0838 |
0.416 |
|
| 2013 |
Chelo IM, Nédli J, Gordo I, Teotónio H. An experimental test on the probability of extinction of new genetic variants. Nature Communications. 4: 2417. PMID 24030070 DOI: 10.1038/Ncomms3417 |
0.399 |
|
| 2013 |
Avelar AT, Perfeito L, Gordo I, Ferreira MG. Genome architecture is a selectable trait that can be maintained by antagonistic pleiotropy. Nature Communications. 4: 2235. PMID 23974178 DOI: 10.1038/Ncomms3235 |
0.761 |
|
| 2013 |
Moura de Sousa JA, Campos PR, Gordo I. An ABC method for estimating the rate and distribution of effects of beneficial mutations. Genome Biology and Evolution. 5: 794-806. PMID 23542207 DOI: 10.1093/Gbe/Evt045 |
0.565 |
|
| 2013 |
Brito PH, Rocha EP, Xavier KB, Gordo I. Natural genome diversity of AI-2 quorum sensing in Escherichia coli: conserved signal production but labile signal reception. Genome Biology and Evolution. 5: 16-30. PMID 23246794 DOI: 10.1093/Gbe/Evs122 |
0.332 |
|
| 2013 |
Miskinyte M, Gordo I. Increased survival of antibiotic-resistant Escherichia coli inside macrophages. Antimicrobial Agents and Chemotherapy. 57: 189-95. PMID 23089747 DOI: 10.1128/Aac.01632-12 |
0.474 |
|
| 2013 |
Gordo I, Campos PR. Evolution of clonal populations approaching a fitness peak. Biology Letters. 9: 20120239. PMID 22764110 DOI: 10.1098/Rsbl.2012.0239 |
0.516 |
|
| 2012 |
Trindade S, Sousa A, Gordo I. Antibiotic resistance and stress in the light of Fisher's model. Evolution; International Journal of Organic Evolution. 66: 3815-24. PMID 23206139 DOI: 10.1111/J.1558-5646.2012.01722.X |
0.51 |
|
| 2012 |
Sousa A, Magalhães S, Gordo I. Cost of antibiotic resistance and the geometry of adaptation. Molecular Biology and Evolution. 29: 1417-28. PMID 22144641 DOI: 10.1093/Molbev/Msr302 |
0.554 |
|
| 2011 |
Gordo I, Perfeito L, Sousa A. Fitness effects of mutations in bacteria. Journal of Molecular Microbiology and Biotechnology. 21: 20-35. PMID 22248540 DOI: 10.1159/000332747 |
0.808 |
|
| 2011 |
Silva RF, Mendonça SC, Carvalho LM, Reis AM, Gordo I, Trindade S, Dionisio F. Pervasive sign epistasis between conjugative plasmids and drug-resistance chromosomal mutations. Plos Genetics. 7: e1002181. PMID 21829372 DOI: 10.1371/Journal.Pgen.1002181 |
0.457 |
|
| 2010 |
Brito PH, Guilherme E, Soares H, Gordo I. Mutation accumulation in Tetrahymena. Bmc Evolutionary Biology. 10: 354. PMID 21078144 DOI: 10.1186/1471-2148-10-354 |
0.513 |
|
| 2010 |
Marais GA, Campos PR, Gordo I. Can intra-Y gene conversion oppose the degeneration of the human Y chromosome? A simulation study. Genome Biology and Evolution. 2: 347-57. PMID 20624739 DOI: 10.1093/Gbe/Evq026 |
0.307 |
|
| 2010 |
Trindade S, Perfeito L, Gordo I. Rate and effects of spontaneous mutations that affect fitness in mutator Escherichia coli. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 1177-86. PMID 20308092 DOI: 10.1098/Rstb.2009.0287 |
0.798 |
|
| 2009 |
Charlesworth B, Betancourt AJ, Kaiser VB, Gordo I. Genetic recombination and molecular evolution. Cold Spring Harbor Symposia On Quantitative Biology. 74: 177-86. PMID 19734202 DOI: 10.1101/Sqb.2009.74.015 |
0.569 |
|
| 2009 |
Trindade S, Sousa A, Xavier KB, Dionisio F, Ferreira MG, Gordo I. Positive epistasis drives the acquisition of multidrug resistance. Plos Genetics. 5: e1000578. PMID 19629166 DOI: 10.1371/Journal.Pgen.1000578 |
0.39 |
|
| 2009 |
Gordo I, Gomes MG, Reis DG, Campos PR. Genetic diversity in the SIR model of pathogen evolution. Plos One. 4: e4876. PMID 19287490 DOI: 10.1371/Journal.Pone.0004876 |
0.395 |
|
| 2008 |
Gordo I, Campos PR. Sex and deleterious mutations. Genetics. 179: 621-6. PMID 18493076 DOI: 10.1534/Genetics.108.086637 |
0.544 |
|
| 2008 |
Campos PR, Neto PS, de Oliveira VM, Gordo I. Environmental heterogeneity enhances clonal interference. Evolution; International Journal of Organic Evolution. 62: 1390-9. PMID 18363863 DOI: 10.1111/J.1558-5646.2008.00380.X |
0.591 |
|
| 2008 |
Perfeito L, Pereira MI, Campos PR, Gordo I. The effect of spatial structure on adaptation in Escherichia coli. Biology Letters. 4: 57-9. PMID 18029298 DOI: 10.1098/Rsbl.2007.0481 |
0.793 |
|
| 2007 |
Perfeito L, Fernandes L, Mota C, Gordo I. Adaptive mutations in bacteria: high rate and small effects. Science (New York, N.Y.). 317: 813-5. PMID 17690297 DOI: 10.1126/Science.1142284 |
0.808 |
|
| 2007 |
Gordo I, Campos PR. Patterns of genetic variation in populations of infectious agents. Bmc Evolutionary Biology. 7: 116. PMID 17629913 DOI: 10.1186/1471-2148-7-116 |
0.399 |
|
| 2007 |
Combadão J, Campos PR, Dionisio F, Gordo I. Small-world networks decrease the speed of Muller's ratchet. Genetical Research. 89: 7-18. PMID 17517155 DOI: 10.1017/S0016672307008658 |
0.344 |
|
| 2006 |
Gordo I, Campos PR. Adaptive evolution in a spatially structured asexual population. Genetica. 127: 217-29. PMID 16850226 DOI: 10.1007/S10709-005-4012-9 |
0.541 |
|
| 2006 |
Perfeito L, Gordo I, Campos PRA. The effect of spatial structure in adaptive evolution European Physical Journal B. 51: 301-306. DOI: 10.1140/Epjb/E2006-00222-X |
0.772 |
|
| 2006 |
Campos PRA, Gordo I. Pathogen genetic variation in small-world host contact structures Journal of Statistical Mechanics: Theory and Experiment. DOI: 10.1088/1742-5468/2006/12/L12003 |
0.372 |
|
| 2005 |
Dionisio F, Conceição IC, Marques AC, Fernandes L, Gordo I. The evolution of a conjugative plasmid and its ability to increase bacterial fitness. Biology Letters. 1: 250-2. PMID 17148179 DOI: 10.1098/Rsbl.2004.0275 |
0.384 |
|
| 2005 |
Rosas A, Gordo I, Campos PR. Scaling, genetic drift, and clonal interference in the extinction pattern of asexual population. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 012901. PMID 16090018 DOI: 10.1103/Physreve.72.012901 |
0.546 |
|
| 2005 |
Gordo I, Dionisio F. Nonequilibrium model for estimating parameters of deleterious mutations. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 031907. PMID 15903459 DOI: 10.1103/Physreve.71.031907 |
0.575 |
|
| 2004 |
Bachtrog D, Gordo I. Adaptive evolution of asexual populations under Muller's ratchet. Evolution; International Journal of Organic Evolution. 58: 1403-13. PMID 15341144 DOI: 10.1111/J.0014-3820.2004.Tb01722.X |
0.587 |
|
| 2002 |
Gordo I, Navarro A, Charlesworth B. Muller's ratchet and the pattern of variation at a neutral locus. Genetics. 161: 835-48. PMID 12072478 |
0.649 |
|
| 2001 |
Gordo I, Charlesworth B. The speed of Muller's ratchet with background selection, and the degeneration of Y chromosomes. Genetical Research. 78: 149-61. PMID 11732092 DOI: 10.1017/S0016672301005213 |
0.687 |
|
| 2001 |
Gordo I, Charlesworth B. Genetic linkage and molecular evolution. Current Biology : Cb. 11: R684-6. PMID 11553339 DOI: 10.1016/S0960-9822(01)00408-0 |
0.594 |
|
| 2000 |
Gordo I, Charlesworth B. On the speed of Muller's ratchet. Genetics. 156: 2137-40. PMID 11187462 |
0.34 |
|
| 2000 |
Gordo I, Charlesworth B. The degeneration of asexual haploid populations and the speed of Muller's ratchet. Genetics. 154: 1379-87. PMID 10757777 |
0.613 |
|
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