| Year |
Citation |
Score |
| 2024 |
Gupta VVSR, Tiedje JM. Ranking environmental and edaphic attributes driving soil microbial community structure and activity with special attention to spatial and temporal scales. Mlife. 3: 21-41. PMID 38827504 DOI: 10.1002/mlf2.12116 |
0.302 |
|
| 2024 |
Tao X, Yang Z, Feng J, Jian S, Yang Y, Bates CT, Wang G, Guo X, Ning D, Kempher ML, Liu XJA, Ouyang Y, Han S, Wu L, Zeng Y, ... ... Tiedje JM, et al. Experimental warming accelerates positive soil priming in a temperate grassland ecosystem. Nature Communications. 15: 1178. PMID 38331994 DOI: 10.1038/s41467-024-45277-0 |
0.638 |
|
| 2023 |
Fu Y, Dou Q, Smalla K, Wang Y, Johnson TA, Brandt KK, Mei Z, Liao M, Hashsham SA, Schäffer A, Smidt H, Zhang T, Li H, Stedtfeld R, Sheng H, ... ... Tiedje JM, et al. Gut microbiota research nexus: One Health relationship between human, animal, and environmental resistomes. Mlife. 2: 350-364. PMID 38818274 DOI: 10.1002/mlf2.12101 |
0.428 |
|
| 2023 |
Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E, Iliopoulos I, Konstantinidis K, ... Tiedje JM, et al. Unraveling the functional dark matter through global metagenomics. Nature. 622: 594-602. PMID 37821698 DOI: 10.1038/s41586-023-06583-7 |
0.657 |
|
| 2022 |
Guo X, Yuan M, Lei J, Shi Z, Zhou X, Li J, Deng Y, Yang Y, Wu L, Luo Y, Tiedje JM, Zhou J. Climate warming restructures seasonal dynamics of grassland soil microbial communities. Mlife. 1: 245-256. PMID 38818216 DOI: 10.1002/mlf2.12035 |
0.47 |
|
| 2022 |
Wu L, Zhang Y, Guo X, Ning D, Zhou X, Feng J, Yuan MM, Liu S, Guo J, Gao Z, Ma J, Kuang J, Jian S, Han S, Yang Z, ... ... Tiedje JM, et al. Reduction of microbial diversity in grassland soil is driven by long-term climate warming. Nature Microbiology. PMID 35697795 DOI: 10.1038/s41564-022-01147-3 |
0.473 |
|
| 2022 |
Tiedje JM, Bruns MA, Casadevall A, Criddle CS, Eloe-Fadrosh E, Karl DM, Nguyen NK, Zhou J. Microbes and Climate Change: a Research Prospectus for the Future. Mbio. e0080022. PMID 35438534 DOI: 10.1128/mbio.00800-22 |
0.377 |
|
| 2021 |
Wu L, Yang F, Feng J, Tao X, Qi Q, Wang C, Schuur EAG, Bracho R, Huang Y, Cole JR, Tiedje JM, Zhou J. Permafrost thaw with warming reduces microbial metabolic capacities in subsurface soils. Molecular Ecology. PMID 34878672 DOI: 10.1111/mec.16319 |
0.497 |
|
| 2020 |
Cheng J, Yang Y, Yuan MM, Gao Q, Wu L, Qin Z, Shi ZJ, Schuur EAG, Cole JR, Tiedje JM, Zhou J. Winter warming rapidly increases carbon degradation capacities of fungal communities in tundra soil: potential consequences on carbon stability. Molecular Ecology. PMID 33305411 DOI: 10.1111/mec.15773 |
0.492 |
|
| 2020 |
Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... Tiedje JM, et al. Author Correction: Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 33184503 DOI: 10.1038/s41564-020-00827-2 |
0.737 |
|
| 2020 |
Guo X, Gao Q, Yuan M, Wang G, Zhou X, Feng J, Shi Z, Hale L, Wu L, Zhou A, Tian R, Liu F, Wu B, Chen L, Jung CG, ... ... Tiedje JM, et al. Gene-informed decomposition model predicts lower soil carbon loss due to persistent microbial adaptation to warming. Nature Communications. 11: 4897. PMID 32994415 DOI: 10.1038/s41467-020-18706-z |
0.637 |
|
| 2020 |
Zhu X, Jackson RD, DeLucia EH, Tiedje JM, Liang C. The soil microbial carbon pump: from conceptual insights to empirical assessments. Global Change Biology. PMID 32844509 DOI: 10.1111/Gcb.15319 |
0.393 |
|
| 2020 |
Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... Tiedje JM, et al. Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 32514073 DOI: 10.1038/S41564-020-0733-X |
0.785 |
|
| 2020 |
Tao X, Feng J, Yang Y, Wang G, Tian R, Fan F, Ning D, Bates CT, Hale L, Yuan MM, Wu L, Gao Q, Lei J, Schuur EAG, Yu J, ... ... Tiedje JM, et al. Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria. Microbiome. 8: 84. PMID 32503635 DOI: 10.1186/S40168-020-00838-5 |
0.785 |
|
| 2020 |
Wu R, Chai B, Cole JR, Gunturu SK, Guo X, Tian R, Gu JD, Zhou J, Tiedje JM. Targeted assemblies of cas1 suggest CRISPR-Cas's response to soil warming. The Isme Journal. PMID 32221408 DOI: 10.1038/S41396-020-0635-1 |
0.49 |
|
| 2020 |
Mirza BS, McGlinn DJ, Bohannan BJM, Nüsslein K, Tiedje JM, Rodrigues JLM. Diazotrophs show sign of restoration in Amazon rainforest soils with ecosystem rehabilitation. Applied and Environmental Microbiology. PMID 32169937 DOI: 10.1128/Aem.00195-20 |
0.341 |
|
| 2020 |
Chai B, Tsoi T, Sallach JB, Liu C, Landgraf J, Bezdek M, Zylstra G, Li H, Johnston CT, Teppen BJ, Cole JR, Boyd SA, Tiedje JM. Bioavailability of clay-adsorbed dioxin to Sphingomonas wittichii RW1 and its associated genome-wide shifts in gene expression. The Science of the Total Environment. 712: 135525. PMID 32050392 DOI: 10.1016/J.Scitotenv.2019.135525 |
0.394 |
|
| 2020 |
Feng J, Wang C, Lei J, Yang Y, Yan Q, Zhou X, Tao X, Ning D, Yuan MM, Qin Y, Shi ZJ, Guo X, He Z, Van Nostrand JD, Wu L, ... ... Tiedje JM, et al. Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community. Microbiome. 8: 3. PMID 31952472 DOI: 10.1186/S40168-019-0778-3 |
0.8 |
|
| 2020 |
Xu J, Roley SS, Tfaily MM, Chu RK, Tiedje JM. Organic amendments change soil organic C structure and microbial community but not total organic matter on sub-decadal scales Soil Biology & Biochemistry. 150: 107986. DOI: 10.1016/J.Soilbio.2020.107986 |
0.423 |
|
| 2019 |
Gupta VVSR, Zhang B, Penton CR, Yu J, Tiedje JM. Diazotroph Diversity and Nitrogen Fixation in Summer Active Perennial Grasses in a Mediterranean Region Agricultural Soil. Frontiers in Molecular Biosciences. 6: 115. PMID 31750314 DOI: 10.3389/Fmolb.2019.00115 |
0.702 |
|
| 2019 |
Guo J, Quensen JF, Sun Y, Wang Q, Brown CT, Cole JR, Tiedje JM. Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes. Frontiers in Genetics. 10: 957. PMID 31749830 DOI: 10.3389/Fgene.2019.00957 |
0.406 |
|
| 2019 |
Wu L, Ning D, Zhang B, Li Y, Zhang P, Shan X, Zhang Q, Brown MR, Li Z, Van Nostrand JD, Ling F, Xiao N, Zhang Y, Vierheilig J, Wells GF, ... ... Tiedje JM, et al. Author Correction: Global diversity and biogeography of bacterial communities in wastewater treatment plants. Nature Microbiology. PMID 31728072 DOI: 10.1038/S41564-019-0617-0 |
0.536 |
|
| 2019 |
Deng J, Auchtung JM, Konstantinidis KT, Brettar I, Höfle MG, Tiedje JM. Genomic Variations Underlying Speciation and Niche Specialization of . Msystems. 4. PMID 31615877 DOI: 10.1128/mSystems.00560-19 |
0.621 |
|
| 2019 |
de Los Santos Villalobos S, Robles RI, Parra Cota FI, Larsen J, Lozano P, Tiedje JM. sp. nov., an endophytic plant growth promoting bacterium isolated from wheat ( subsp) in the Yaqui Valley, Mexico. International Journal of Systematic and Evolutionary Microbiology. PMID 31526457 DOI: 10.1099/Ijsem.0.003711 |
0.346 |
|
| 2019 |
Xu M, Stedtfeld RD, Wang F, Hashsham SA, Song Y, Chuang Y, Fan J, Li H, Jiang X, Tiedje JM. Composting increased persistence of manure-borne antibiotic resistance genes in soils with different fertilization history. The Science of the Total Environment. 689: 1172-1180. PMID 31466157 DOI: 10.1016/J.Scitotenv.2019.06.376 |
0.377 |
|
| 2019 |
Ning D, Deng Y, Tiedje JM, Zhou J. A general framework for quantitatively assessing ecological stochasticity. Proceedings of the National Academy of Sciences of the United States of America. PMID 31391302 DOI: 10.1073/Pnas.1904623116 |
0.479 |
|
| 2019 |
Hale L, Feng W, Yin H, Guo X, Zhou X, Bracho R, Pegoraro E, Penton CR, Wu L, Cole J, Konstantinidis KT, Luo Y, Tiedje JM, Schuur EAG, Zhou J. Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon. The Isme Journal. PMID 31384013 DOI: 10.1038/S41396-019-0485-X |
0.805 |
|
| 2019 |
Shen Y, Stedtfeld RD, Guo X, Bhalsod GD, Jeon S, Tiedje JM, Li H, Zhang W. Pharmaceutical exposure changed antibiotic resistance genes and bacterial communities in soil-surface- and overhead-irrigated greenhouse lettuce. Environment International. 131: 105031. PMID 31336252 DOI: 10.1016/J.Envint.2019.105031 |
0.418 |
|
| 2019 |
Johnston ER, Hatt JK, He Z, Wu L, Guo X, Luo Y, Schuur EAG, Tiedje JM, Zhou J, Konstantinidis KT. Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths. Proceedings of the National Academy of Sciences of the United States of America. PMID 31285347 DOI: 10.1073/Pnas.1901307116 |
0.669 |
|
| 2019 |
Wu L, Ning D, Zhang B, Li Y, Zhang P, Shan X, Zhang Q, Brown M, Li Z, Van Nostrand JD, Ling F, Xiao N, Zhang Y, Vierheilig J, Wells GF, ... ... Tiedje JM, et al. Global diversity and biogeography of bacterial communities in wastewater treatment plants. Nature Microbiology. PMID 31086312 DOI: 10.1038/S41564-019-0426-5 |
0.589 |
|
| 2019 |
Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Tiedje JM, et al. Consent insufficient for data release-Response. Science (New York, N.Y.). 364: 446. PMID 31048484 DOI: 10.1126/Science.Aax7509 |
0.62 |
|
| 2019 |
Guo X, Zhou X, Hale L, Yuan M, Ning D, Feng J, Shi Z, Li Z, Feng B, Gao Q, Wu L, Shi W, Zhou A, Fu Y, Wu L, ... ... Tiedje JM, et al. Climate warming accelerates temporal scaling of grassland soil microbial biodiversity. Nature Ecology & Evolution. PMID 30911147 DOI: 10.1038/S41559-019-0848-8 |
0.517 |
|
| 2019 |
Feng J, Penton CR, He Z, Van Nostrand JD, Yuan MM, Wu L, Wang C, Qin Y, Shi ZJ, Guo X, Schuur EAG, Luo Y, Bracho R, Konstantinidis KT, Cole JR, ... Tiedje JM, et al. Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils. Mbio. 10. PMID 30808694 DOI: 10.1128/Mbio.02521-18 |
0.802 |
|
| 2019 |
Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Tiedje JM, et al. Toward unrestricted use of public genomic data. Science (New York, N.Y.). 363: 350-352. PMID 30679363 DOI: 10.1126/Science.Aaw1280 |
0.63 |
|
| 2019 |
Caskey WH, Tiedje JM. Nitrate-stimulated mineralization of ammonium in anaerobic soils. Oecologia. 41: 339-341. PMID 28309771 DOI: 10.1007/Bf00377438 |
0.348 |
|
| 2019 |
Roley SS, Xue C, Hamilton SK, Tiedje JM, Robertson GP. Isotopic evidence for episodic nitrogen fixation in switchgrass (Panicum virgatum L.) Soil Biology and Biochemistry. 129: 90-98. DOI: 10.1016/J.Soilbio.2018.11.006 |
0.466 |
|
| 2019 |
Pegoraro E, Mauritz M, Bracho R, Ebert C, Dijkstra P, Hungate BA, Konstantinidis KT, Luo Y, Schädel C, Tiedje JM, Zhou J, Schuur EA. Glucose addition increases the magnitude and decreases the age of soil respired carbon in a long-term permafrost incubation study Soil Biology and Biochemistry. 129: 201-211. DOI: 10.1016/J.Soilbio.2018.10.009 |
0.644 |
|
| 2019 |
Jia Z, Hu X, Xia W, Fornara D, Nannipieri P, Tiedje J. Community shift of microbial ammonia oxidizers in air-dried rice soils after 22 years of nitrogen fertilization Biology and Fertility of Soils. 55: 419-424. DOI: 10.1007/S00374-019-01352-Z |
0.387 |
|
| 2018 |
Khan MAW, Bohannan BJM, Nüsslein K, Tiedje JM, Tringe SG, Parlade E, Barberán A, Rodrigues JLM. Deforestation Impacts Network Co-occurrence Patterns of Microbial Communities in Amazon Soils. Fems Microbiology Ecology. PMID 30481288 DOI: 10.1093/Femsec/Fiy230 |
0.381 |
|
| 2018 |
Vital M, Howe A, Bergeron N, Krauss RM, Jansson JK, Tiedje JM. Metagenomic insights into resistant starch degradation by human gut microbiota. Applied and Environmental Microbiology. PMID 30266729 DOI: 10.1128/Aem.01562-18 |
0.551 |
|
| 2018 |
Zhang Y, Boyd SA, Teppen BJ, Tiedje JM, Zhang W, Zhu D, Li H. Bioavailability of tetracycline to antibiotic resistant Escherichia coli in water-clay systems. Environmental Pollution (Barking, Essex : 1987). 243: 1078-1086. PMID 30253298 DOI: 10.1016/J.Envpol.2018.09.059 |
0.364 |
|
| 2018 |
Mackelprang R, Grube AM, Lamendella R, Jesus EDC, Copeland A, Liang C, Jackson RD, Rice CW, Kapucija S, Parsa B, Tringe SG, Tiedje JM, Jansson JK. Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States. Frontiers in Microbiology. 9: 1775. PMID 30158906 DOI: 10.3389/Fmicb.2018.01775 |
0.625 |
|
| 2018 |
Liang J, Zhou Z, Huo C, Shi Z, Cole JR, Huang L, Konstantinidis KT, Li X, Liu B, Luo Z, Penton CR, Schuur EAG, Tiedje JM, Wang YP, Wu L, et al. More replenishment than priming loss of soil organic carbon with additional carbon input. Nature Communications. 9: 3175. PMID 30093611 DOI: 10.1038/S41467-018-05667-7 |
0.776 |
|
| 2018 |
Kroeger ME, Delmont TO, Eren AM, Meyer KM, Guo J, Khan K, Rodrigues JLM, Bohannan BJM, Tringe SG, Borges CD, Tiedje JM, Tsai SM, Nüsslein K. New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes. Frontiers in Microbiology. 9: 1635. PMID 30083144 DOI: 10.3389/Fmicb.2018.01635 |
0.409 |
|
| 2018 |
Stedtfeld RD, Guo X, Stedtfeld TM, Sheng H, Williams MR, Hauschild K, Gunturu S, Tift L, Wang F, Howe A, Chai B, Yin D, Cole JR, Tiedje JM, Hashsham SA. Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements. Fems Microbiology Ecology. 94. PMID 30052926 DOI: 10.1093/Femsec/Fiy130 |
0.345 |
|
| 2018 |
Zhang AN, Li LG, Ma L, Gillings MR, Tiedje JM, Zhang T. Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid collection. Microbiome. 6: 130. PMID 30031405 DOI: 10.1186/S40168-018-0516-2 |
0.309 |
|
| 2018 |
Guo X, Stedtfeld RD, Hedman H, Eisenberg JNS, Truebac G, Yin D, Tiedje JM, Zhang L. Antibiotic Resistome Associated with Small-scale Poultry Production in Rural Ecuador. Environmental Science & Technology. PMID 29944836 DOI: 10.1021/Acs.Est.8B01667 |
0.334 |
|
| 2018 |
Rodriguez-R LM, Gunturu S, Harvey WT, Rosselló-Mora R, Tiedje JM, Cole JR, Konstantinidis KT. The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level. Nucleic Acids Research. PMID 29905870 DOI: 10.1093/Nar/Gky467 |
0.567 |
|
| 2018 |
Guo X, Zhou X, Hale L, Yuan M, Feng J, Ning D, Shi Z, Qin Y, Liu F, Wu L, He Z, Van Nostrand JD, Liu X, Luo Y, Tiedje JM, et al. Taxonomic and Functional Responses of Soil Microbial Communities to Annual Removal of Aboveground Plant Biomass. Frontiers in Microbiology. 9: 954. PMID 29904372 DOI: 10.3389/Fmicb.2018.00954 |
0.572 |
|
| 2018 |
Roley SS, Duncan DS, Liang D, Garoutte A, Jackson RD, Tiedje JM, Robertson GP. Associative nitrogen fixation (ANF) in switchgrass (Panicum virgatum) across a nitrogen input gradient. Plos One. 13: e0197320. PMID 29856843 DOI: 10.1371/Journal.Pone.0197320 |
0.471 |
|
| 2018 |
Liang J, Xia J, Shi Z, Jiang L, Ma S, Lu X, Mauritz M, Natali SM, Pegoraro E, Penton CR, Plaza C, Salmon VG, Celis G, Cole JR, Konstantinidis KT, ... Tiedje JM, et al. Biotic responses buffer warming-induced soil organic carbon loss in Arctic tundra. Global Change Biology. PMID 29802797 DOI: 10.1111/Gcb.14325 |
0.787 |
|
| 2018 |
Rodriguez-R LM, Gunturu S, Tiedje JM, Cole JR, Konstantinidis KT. Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity. Msystems. 3. PMID 29657970 DOI: 10.1128/mSystems.00039-18 |
0.518 |
|
| 2018 |
Xiao J, Yu F, Zhu W, Xu C, Zhang K, Luo Y, Tiedje JM, Zhou J, Cheng L. Comment on "The whole-soil carbon flux in response to warming". Science (New York, N.Y.). 359. PMID 29472453 DOI: 10.1126/Science.Aao0218 |
0.502 |
|
| 2018 |
Li B, Wu WM, Watson DB, Cardenas E, Chao Y, Phillips DH, Mehlhorn T, Lowe K, Kelly SD, Li P, Tao H, Tiedje JM, Criddle CS, Zhang T. Bacterial Community Shift and Coexisting/Coexcluding Patterns Revealed by Network Analysis in A Bioreduced Uranium Contaminated Site after Reoxidation. Applied and Environmental Microbiology. PMID 29453264 DOI: 10.1128/Aem.02885-17 |
0.385 |
|
| 2018 |
de Los Santos-Villalobos S, Kremer JM, Parra-Cota FI, Hayano-Kanashiro AC, García-Ortega LF, Gunturu SK, Tiedje JM, He SY, Peña-Cabriales JJ. Draft genome of the fungicidal biological control agent Burkholderia anthina strain XXVI. Archives of Microbiology. 200: 803-810. PMID 29428982 DOI: 10.1007/S00203-018-1490-6 |
0.316 |
|
| 2018 |
Rodriguez-R LM, Castro JC, Kyrpides NC, Cole JR, Tiedje JM, Konstantinidis KT. How much do rRNA gene surveys underestimate extant bacterial diversity? Applied and Environmental Microbiology. PMID 29305502 DOI: 10.1128/Aem.00014-18 |
0.599 |
|
| 2018 |
Guo X, Feng J, Shi Z, Zhou X, Yuan M, Tao X, Hale L, Yuan T, Wang J, Qin Y, Zhou A, Fu Y, Wu L, He Z, Van Nostrand JD, ... ... Tiedje JM, et al. Climate warming leads to divergent succession of grassland microbial communities Nature Climate Change. 8: 813-818. DOI: 10.1038/S41558-018-0254-2 |
0.525 |
|
| 2018 |
Xue C, Hao Y, Pu X, Ryan Penton C, Wang Q, Zhao M, Zhang B, Ran W, Huang Q, Shen Q, Tiedje JM. Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities Biology and Fertility of Soils. 55: 79-88. DOI: 10.1007/S00374-018-1331-4 |
0.339 |
|
| 2017 |
Etchebarne BE, Li Z, Stedtfeld RD, Nicholas MC, Williams MR, Johnson TA, Stedtfeld TM, Kostic T, Khalife WT, Tiedje JM, Hashsham SA, Hughes MJ. Evaluation of Nucleic Acid Isothermal Amplification Methods for Human Clinical Microbial Infection Detection. Frontiers in Microbiology. 8: 2211. PMID 29312154 DOI: 10.3389/Fmicb.2017.02211 |
0.502 |
|
| 2017 |
Deng J, Auchtung J, Konstantinidis KT, Caro-Quintero A, Brettar I, Höfle M, Tiedje JM. Divergence in gene regulation contributes to sympatric speciation of Shewanella baltica strains. Applied and Environmental Microbiology. PMID 29222101 DOI: 10.1128/Aem.02015-17 |
0.649 |
|
| 2017 |
Šket R, Treichel N, Kublik S, Debevec T, Eiken O, Mekjavić I, Schloter M, Vital M, Chandler J, Tiedje JM, Murovec B, Prevoršek Z, Likar M, Stres B. Hypoxia and inactivity related physiological changes precede or take place in absence of significant rearrangements in bacterial community structure: The PlanHab randomized trial pilot study. Plos One. 12: e0188556. PMID 29211803 DOI: 10.1371/Journal.Pone.0188556 |
0.337 |
|
| 2017 |
Do TT, Tamames J, Stedtfeld RD, Guo X, Murphy S, Tiedje JM, Walsh F. Antibiotic Resistance Gene Detection in the Microbiome Context. Microbial Drug Resistance (Larchmont, N.Y.). PMID 29185915 DOI: 10.1089/Mdr.2017.0199 |
0.363 |
|
| 2017 |
Stedtfeld RD, Brett Sallach J, Crawford RB, Stedtfeld TM, Williams MR, Waseem H, Johnston CT, Li H, Teppen BJ, Kaminski NE, Boyd SA, Tiedje JM, Hashsham SA. TCDD administered on activated carbon eliminates bioavailability and subsequent shifts to a key murine gut commensal. Applied Microbiology and Biotechnology. PMID 28812142 DOI: 10.1007/S00253-017-8460-9 |
0.34 |
|
| 2017 |
Yuan MM, Zhang J, Xue K, Wu L, Deng Y, Deng J, Hale L, Zhou X, He Z, Yang Y, Van Nostrand JD, Schuur EAG, Konstantinidis KT, Penton CR, Cole JR, ... Tiedje JM, et al. Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil. Global Change Biology. PMID 28715138 DOI: 10.1111/Gcb.13820 |
0.827 |
|
| 2017 |
Robertson GP, Hamilton SK, Barham BL, Dale BE, Izaurralde RC, Jackson RD, Landis DA, Swinton SM, Thelen KD, Tiedje JM. Cellulosic biofuel contributions to a sustainable energy future: Choices and outcomes. Science (New York, N.Y.). 356. PMID 28663443 DOI: 10.1126/Science.Aal2324 |
0.427 |
|
| 2017 |
Fonseca EDS, Peixoto RS, Rosado AS, Balieiro FC, Tiedje JM, Rachid CTCDC. The Microbiome of Eucalyptus Roots under Different Management Conditions and Its Potential for Biological Nitrogen Fixation. Microbial Ecology. PMID 28634640 DOI: 10.1007/S00248-017-1014-Y |
0.384 |
|
| 2017 |
Chen Z, Zhang W, Wang G, Zhang Y, Gao Y, Boyd SA, Teppen BJ, Tiedje JM, Zhu D, Li H. Bioavailability of Soil-Sorbed Tetracycline to Escherichia coli under Unsaturated Conditions. Environmental Science & Technology. PMID 28525258 DOI: 10.1021/Acs.Est.7B00590 |
0.354 |
|
| 2017 |
Šket R, Treichel N, Debevec T, Eiken O, Mekjavic I, Schloter M, Vital M, Chandler J, Tiedje JM, Murovec B, Prevoršek Z, Stres B. Hypoxia and Inactivity Related Physiological Changes (Constipation, Inflammation) Are Not Reflected at the Level of Gut Metabolites and Butyrate Producing Microbial Community: The PlanHab Study. Frontiers in Physiology. 8: 250. PMID 28522975 DOI: 10.3389/Fphys.2017.00250 |
0.334 |
|
| 2017 |
Stedtfeld RD, Stedtfeld TM, Fader KA, Williams MR, Bhaduri P, Quensen J, Zacharewski TR, Tiedje JM, Hashsham SA. TCDD influences reservoir of antibiotic resistance genes in murine gut microbiome. Fems Microbiology Ecology. PMID 28475713 DOI: 10.1093/Femsec/Fix058 |
0.316 |
|
| 2017 |
Stedtfeld RD, Stedtfeld TM, Waseem H, Fitschen-Brown M, Guo X, Chai B, Williams MR, Shook T, Logan A, Graham A, Chae JC, Sul WJ, VanHouten J, Cole JR, Zylstra GJ, ... Tiedje JM, et al. Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers. Journal of Environmental Management. 198: 213-220. PMID 28460328 DOI: 10.1016/J.Jenvman.2017.04.079 |
0.669 |
|
| 2017 |
Muurinen J, Stedtfeld RD, Karkman A, Pärnänen K, Tiedje JM, Virta MPJ. Influence of Manure Application on the Environmental Resistome Under Finnish Agricultural Practice with Restricted Antibiotic Use. Environmental Science & Technology. PMID 28453251 DOI: 10.1021/Acs.Est.7B00551 |
0.357 |
|
| 2017 |
Srinivasan V, Stedtfeld RD, Tourlousse DM, Baushke SW, Xin Y, Miller SM, Pham T, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA. Diagnostic microarray for 14 water and foodborne pathogens using a flatbed scanner. Journal of Microbiological Methods. PMID 28438642 DOI: 10.1016/J.Mimet.2017.04.009 |
0.306 |
|
| 2017 |
Cheng L, Zhang N, Yuan M, Xiao J, Qin Y, Deng Y, Tu Q, Xue K, Van Nostrand JD, Wu L, He Z, Zhou X, Leigh MB, Konstantinidis KT, Schuur EA, ... ... Tiedje JM, et al. Warming enhances old organic carbon decomposition through altering functional microbial communities. The Isme Journal. PMID 28430189 DOI: 10.1038/Ismej.2017.48 |
0.679 |
|
| 2017 |
Waseem H, Williams MR, Stedtfeld T, Chai B, Stedtfeld RD, Cole JR, Tiedje JM, Hashsham SA. Virulence factor activity relationships (VFARs): a bioinformatics perspective. Environmental Science. Processes & Impacts. PMID 28261716 DOI: 10.1039/C6Em00689B |
0.315 |
|
| 2017 |
Meyer KM, Klein AM, Rodrigues JL, Nüsslein K, Tringe SG, Mirza BS, Tiedje JM, Bohannan BJ. Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms. Molecular Ecology. PMID 28100018 DOI: 10.1111/Mec.14011 |
0.596 |
|
| 2017 |
JIA Z, KUZYAKOV Y, MYROLD D, TIEDJE J. Soil Organic Carbon in a Changing World Pedosphere. 27: 789-791. DOI: 10.1016/S1002-0160(17)60489-2 |
0.328 |
|
| 2017 |
Zhang B, Penton CR, Xue C, Quensen JF, Roley SS, Guo J, Garoutte A, Zheng T, Tiedje JM. Soil depth and crop determinants of bacterial communities under ten biofuel cropping systems Soil Biology and Biochemistry. 112: 140-152. DOI: 10.1016/J.Soilbio.2017.04.019 |
0.723 |
|
| 2016 |
Muziasari WI, Pitkänen LK, Sørum H, Stedtfeld RD, Tiedje JM, Virta M. The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms. Frontiers in Microbiology. 7: 2137. PMID 28111573 DOI: 10.3389/Fmicb.2016.02137 |
0.343 |
|
| 2016 |
Choi J, Yang F, Stepanauskas R, Cardenas E, Garoutte A, Williams R, Flater J, Tiedje JM, Hofmockel KS, Gelder B, Howe A. Strategies to improve reference databases for soil microbiomes. The Isme Journal. PMID 27935589 DOI: 10.1038/Ismej.2016.168 |
0.332 |
|
| 2016 |
Penton CR, Yang C, Wu L, Wang Q, Zhang J, Liu F, Qin Y, Deng Y, Hemme CL, Zheng T, Schuur EA, Tiedje J, Zhou J. NifH-Harboring Bacterial Community Composition across an Alaskan Permafrost Thaw Gradient. Frontiers in Microbiology. 7: 1894. PMID 27933054 DOI: 10.3389/Fmicb.2016.01894 |
0.754 |
|
| 2016 |
de Carvalho TS, Jesus ED, Barlow J, Gardner TA, Soares IC, Tiedje JM, Moreira FM. Land use intensification in the humid tropics increased both alpha and beta diversity of soil bacteria. Ecology. 97: 2760-2771. PMID 27859123 DOI: 10.1002/Ecy.1513 |
0.408 |
|
| 2016 |
Wang F, Stedtfeld RD, Kim OS, Chai B, Yang L, Stedtfeld TM, Hong SG, Kim D, Lim HS, Hashsham SA, Tiedje JM, Sul WJ. Influence of Soil Characteristics and Proximity to Antarctic Research Stations on Abundance of Antibiotic Resistance Genes in Soils. Environmental Science & Technology. PMID 27797533 DOI: 10.1021/Acs.Est.6B02863 |
0.686 |
|
| 2016 |
Garoutte A, Cardenas E, Tiedje J, Howe A. Methodologies for probing the metatranscriptome of grassland soil. Journal of Microbiological Methods. 131: 122-129. PMID 27793585 DOI: 10.1016/J.Mimet.2016.10.018 |
0.426 |
|
| 2016 |
Hambright WS, Deng J, Tiedje JM, Brettar I, Rodrigues JL. Shewanella baltica Ecotypes Have Wide Transcriptional Variation under the Same Growth Conditions. Msphere. 1. PMID 27777983 DOI: 10.1128/mSphere.00158-16 |
0.611 |
|
| 2016 |
Xue K, Yuan MM, Xie J, Li D, Qin Y, Hale LE, Wu L, Deng Y, He Z, Van Nostrand JD, Luo Y, Tiedje JM, Zhou J. Annual Removal of Aboveground Plant Biomass Alters Soil Microbial Responses to Warming. Mbio. 7. PMID 27677789 DOI: 10.1128/Mbio.00976-16 |
0.541 |
|
| 2016 |
Penton CR, Gupta VV, Yu J, Tiedje JM. Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons. Frontiers in Microbiology. 7: 824. PMID 27313569 DOI: 10.3389/Fmicb.2016.00824 |
0.738 |
|
| 2016 |
Chai B, Tsoi TV, Iwai S, Liu C, Fish JA, Gu C, Johnson TA, Zylstra G, Teppen BJ, Li H, Hashsham SA, Boyd SA, Cole JR, Tiedje JM. Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay. Plos One. 11: e0157008. PMID 27309357 DOI: 10.1371/Journal.Pone.0157008 |
0.568 |
|
| 2016 |
Johnston ER, Rodriguez-R LM, Luo C, Yuan MM, Wu L, He Z, Schuur EA, Luo Y, Tiedje JM, Zhou J, Konstantinidis KT. Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem. Frontiers in Microbiology. 7: 579. PMID 27199914 DOI: 10.3389/Fmicb.2016.00579 |
0.694 |
|
| 2016 |
Yang Y, Jiang X, Chai B, Ma L, Li B, Zhang A, Cole JR, Tiedje JM, Zhang T. ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database. Bioinformatics (Oxford, England). PMID 27153579 DOI: 10.1093/Bioinformatics/Btw136 |
0.325 |
|
| 2016 |
Johnson TA, Stedtfeld RD, Wang Q, Cole JR, Hashsham SA, Looft T, Zhu YG, Tiedje JM. Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture. Mbio. 7. PMID 27073098 DOI: 10.1128/Mbio.02214-15 |
0.508 |
|
| 2016 |
Wei H, Dai J, Xia M, Romine MF, Shi L, Beliav A, Tiedje JM, Nealson KH, Fredrickson JK, Zhou J, Qiu D. Functional Roles of CymA and NapC in Reduction of Nitrate and Nitrite by Shewanella putrefaciens W3-18-1. Microbiology (Reading, England). PMID 27010745 DOI: 10.1099/Mic.0.000285 |
0.453 |
|
| 2016 |
Muziasari WI, Pärnänen K, Johnson TA, Lyra C, Karkman A, Stedtfeld RD, Tamminen M, Tiedje JM, Virta M. Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments. Fems Microbiology Ecology. PMID 26976842 DOI: 10.1093/Femsec/Fiw052 |
0.536 |
|
| 2016 |
Stedtfeld RD, Williams M, Fakher U, Johnson TA, Stedtfeld TM, Wang F, Khalife WT, Hughes M, Etchebarne B, Tiedje JM, Hashsham SA. Antimicrobial Resistance (AR) Dashboard Application for Mapping Environmental Occurrence and Resistant Pathogens. Fems Microbiology Ecology. PMID 26850162 DOI: 10.1093/Femsec/Fiw020 |
0.533 |
|
| 2016 |
Karkman A, Johnson TA, Lyra C, Stedtfeld RD, Tamminen M, Tiedje JM, Virta M. High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant. Fems Microbiology Ecology. PMID 26832203 DOI: 10.1093/Femsec/Fiw014 |
0.542 |
|
| 2016 |
Xue C, Penton CR, Zhang B, Zhao M, Rothstein DE, Mladenoff DJ, Forrester JA, Shen Q, Tiedje JM. Soil fungal and bacterial responses to conversion of open land to short-rotation woody biomass crops Gcb Bioenergy. DOI: 10.1111/Gcbb.12303 |
0.707 |
|
| 2016 |
Xue K, M. Yuan M, J. Shi Z, Qin Y, Deng Y, Cheng L, Wu L, He Z, Van Nostrand JD, Bracho R, Natali S, Schuur EAG, Luo C, Konstantinidis KT, Wang Q, ... ... Tiedje J, et al. Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming Nature Climate Change. 6: 595-600. DOI: 10.1038/Nclimate2940 |
0.634 |
|
| 2016 |
Bracho R, Natali S, Pegoraro E, Crummer KG, Schädel C, Celis G, Hale L, Wu L, Yin H, Tiedje JM, Konstantinidis KT, Luo Y, Zhou J, Schuur EAG. Temperature sensitivity of organic matter decomposition of permafrost-region soils during laboratory incubations Soil Biology and Biochemistry. 97: 1-14. DOI: 10.1016/J.Soilbio.2016.02.008 |
0.667 |
|
| 2016 |
Liang C, Jesus EdC, Duncan DS, Quensen JF, Jackson RD, Balser TC, Tiedje JM. Switchgrass rhizospheres stimulate microbial biomass but deplete microbial necromass in agricultural soils of the upper Midwest, USA Soil Biology and Biochemistry. 94: 173-180. DOI: 10.1016/J.Soilbio.2015.11.020 |
0.797 |
|
| 2016 |
Hamaoui GS, Rodrigues JLM, Bohannan BJM, Tiedje JM, Nüsslein K. Land-use change drives abundance and community structure alterations of thaumarchaeal ammonia oxidizers in tropical rainforest soils in Rondônia, Brazil Applied Soil Ecology. 107: 48-56. DOI: 10.1016/J.Apsoil.2016.05.012 |
0.364 |
|
| 2016 |
Zhu Y, Su J, Cao Z, Xue K, Quensen J, Guo G, Yang Y, Zhou J, Chu H, Tiedje JM. A buried Neolithic paddy soil reveals loss of microbial functional diversity after modern rice cultivation Science Bulletin. 61: 1052-1060. DOI: 10.1007/S11434-016-1112-0 |
0.537 |
|
| 2015 |
Navarrete AA, Venturini AM, Meyer KM, Klein AM, Tiedje JM, Bohannan BJ, Nüsslein K, Tsai SM, Rodrigues JL. Differential Response of Acidobacteria Subgroups to Forest-to-Pasture Conversion and Their Biogeographic Patterns in the Western Brazilian Amazon. Frontiers in Microbiology. 6: 1443. PMID 26733981 DOI: 10.3389/Fmicb.2015.01443 |
0.597 |
|
| 2015 |
Ma L, Xia Y, Li B, Yang Y, Li LG, Tiedje JM, Zhang T. Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken and Human Feces. Environmental Science & Technology. PMID 26650334 DOI: 10.1021/Acs.Est.5B03522 |
0.326 |
|
| 2015 |
Hemme CL, Tu Q, Shi Z, Qin Y, Gao W, Deng Y, Nostrand JD, Wu L, He Z, Chain PS, Tringe SG, Fields MW, Rubin EM, Tiedje JM, Hazen TC, et al. Comparative metagenomics reveals impact of contaminants on groundwater microbiomes. Frontiers in Microbiology. 6: 1205. PMID 26583008 DOI: 10.3389/Fmicb.2015.01205 |
0.65 |
|
| 2015 |
Guo J, Cole JR, Zhang Q, Brown CT, Tiedje JM. Microbial community analysis with ribosomal gene fragments from shotgun metagenomes. Applied and Environmental Microbiology. PMID 26475107 DOI: 10.1128/Aem.02772-15 |
0.405 |
|
| 2015 |
Singh P, Teal TK, Marsh TL, Tiedje JM, Mosci R, Jernigan K, Zell A, Newton DW, Salimnia H, Lephart P, Sundin D, Khalife W, Britton RA, Rudrik JT, Manning SD. Intestinal microbial communities associated with acute enteric infections and disease recovery. Microbiome. 3: 45. PMID 26395244 DOI: 10.1186/S40168-015-0109-2 |
0.322 |
|
| 2015 |
Penton CR, St Louis D, Pham A, Cole JR, Wu L, Luo Y, Schuur EA, Zhou J, Tiedje JM. Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils. Frontiers in Microbiology. 6: 746. PMID 26284038 DOI: 10.3389/Fmicb.2015.00746 |
0.767 |
|
| 2015 |
Wang Q, Fish JA, Gilman M, Sun Y, Brown CT, Tiedje JM, Cole JR. Xander: employing a novel method for efficient gene-targeted metagenomic assembly. Microbiome. 3: 32. PMID 26246894 DOI: 10.1186/S40168-015-0093-6 |
0.341 |
|
| 2015 |
Li B, Yang Y, Ma L, Ju F, Guo F, Tiedje JM, Zhang T. Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes. The Isme Journal. PMID 25918831 DOI: 10.1038/Ismej.2015.59 |
0.332 |
|
| 2015 |
Zhang B, Penton CR, Xue C, Wang Q, Zheng T, Tiedje JM. Evaluation of the Ion Torrent Personal Genome Machine for Gene-Targeted Studies Using Amplicons of the Nitrogenase Gene nifH. Applied and Environmental Microbiology. 81: 4536-45. PMID 25911484 DOI: 10.1128/Aem.00111-15 |
0.728 |
|
| 2015 |
Zhang P, Wu WM, Van Nostrand JD, Deng Y, He Z, Gihring T, Zhang G, Schadt CW, Watson D, Jardine P, Criddle CS, Brooks S, Marsh TL, Tiedje JM, Arkin AP, et al. Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction. Applied and Environmental Microbiology. 81: 4164-72. PMID 25862231 DOI: 10.1128/Aem.00043-15 |
0.514 |
|
| 2015 |
Rachid CT, Balieiro FC, Fonseca ES, Peixoto RS, Chaer GM, Tiedje JM, Rosado AS. Intercropped silviculture systems, a key to achieving soil fungal community management in eucalyptus plantations. Plos One. 10: e0118515. PMID 25706388 DOI: 10.1371/Journal.Pone.0118515 |
0.41 |
|
| 2015 |
Gillings MR, Gaze WH, Pruden A, Smalla K, Tiedje JM, Zhu YG. Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution. The Isme Journal. 9: 1269-79. PMID 25500508 DOI: 10.1038/Ismej.2014.226 |
0.351 |
|
| 2015 |
Deng J, Gu Y, Zhang J, Xue K, Qin Y, Yuan M, Yin H, He Z, Wu L, Schuur EA, Tiedje JM, Zhou J. Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska. Molecular Ecology. 24: 222-34. PMID 25424441 DOI: 10.1111/Mec.13015 |
0.639 |
|
| 2015 |
Su JQ, Ding LJ, Xue K, Yao HY, Quensen J, Bai SJ, Wei WX, Wu JS, Zhou J, Tiedje JM, Zhu YG. Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus-limited paddy soil. Molecular Ecology. 24: 136-50. PMID 25410123 DOI: 10.1111/Mec.13010 |
0.549 |
|
| 2015 |
Vital M, Gao J, Rizzo M, Harrison T, Tiedje JM. Diet is a major factor governing the fecal butyrate-producing community structure across Mammalia, Aves and Reptilia. The Isme Journal. 9: 832-43. PMID 25343515 DOI: 10.1038/Ismej.2014.179 |
0.377 |
|
| 2015 |
Vital M, Chai B, Østman B, Cole J, Konstantinidis KT, Tiedje JM. Gene expression analysis of E. coli strains provides insights into the role of gene regulation in diversification. The Isme Journal. 9: 1130-40. PMID 25343512 DOI: 10.1038/Ismej.2014.204 |
0.566 |
|
| 2015 |
Penton CR, St. Louis D, Pham A, Cole JR, Wu L, Luo Y, Schuur EAG, Zhou J, Tiedje JM. Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils Frontiers in Microbiology. 6. DOI: 10.3389/fmicb.2015.00746 |
0.69 |
|
| 2015 |
Jesus EdC, Liang C, Quensen JF, Susilawati E, Jackson RD, Balser TC, Tiedje JM. Influence of corn, switchgrass, and prairie cropping systems on soil microbial communities in the upper Midwest of the United States Gcb Bioenergy. DOI: 10.1111/Gcbb.12289 |
0.79 |
|
| 2015 |
Liang J, Li D, Shi Z, Tiedje JM, Zhou J, Schuur EAG, Konstantinidis KT, Luo Y. Methods for estimating temperature sensitivity of soil organic matter based on incubation data: A comparative evaluation Soil Biology and Biochemistry. 80: 127-135. DOI: 10.1016/J.Soilbio.2014.10.005 |
0.601 |
|
| 2014 |
Zaborin A, Smith D, Garfield K, Quensen J, Shakhsheer B, Kade M, Tirrell M, Tiedje J, Gilbert JA, Zaborina O, Alverdy JC. Membership and behavior of ultra-low-diversity pathogen communities present in the gut of humans during prolonged critical illness. Mbio. 5: e01361-14. PMID 25249279 DOI: 10.1128/Mbio.01361-14 |
0.348 |
|
| 2014 |
Zhang Y, Boyd SA, Teppen BJ, Tiedje JM, Li H. Organic acids enhance bioavailability of tetracycline in water to Escherichia coli for uptake and expression of antibiotic resistance. Water Research. 65: 98-106. PMID 25100186 DOI: 10.1016/J.Watres.2014.07.021 |
0.306 |
|
| 2014 |
Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, ... ... Tiedje JM, et al. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. Plos Biology. 12: e1001920. PMID 25093819 DOI: 10.1371/Journal.Pbio.1001920 |
0.757 |
|
| 2014 |
Siles JA, Rachid CT, Sampedro I, García-Romera I, Tiedje JM. Microbial diversity of a Mediterranean soil and its changes after biotransformed dry olive residue amendment. Plos One. 9: e103035. PMID 25058610 DOI: 10.1371/Journal.Pone.0103035 |
0.429 |
|
| 2014 |
Paula FS, Rodrigues JL, Zhou J, Wu L, Mueller RC, Mirza BS, Bohannan BJ, Nüsslein K, Deng Y, Tiedje JM, Pellizari VH. Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities. Molecular Ecology. 23: 2988-99. PMID 24806276 DOI: 10.1111/Mec.12786 |
0.672 |
|
| 2014 |
Vital M, Howe AC, Tiedje JM. Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data. Mbio. 5: e00889. PMID 24757212 DOI: 10.1128/Mbio.00889-14 |
0.377 |
|
| 2014 |
Penton CR, Gupta VV, Tiedje JM, Neate SM, Ophel-Keller K, Gillings M, Harvey P, Pham A, Roget DK. Fungal community structure in disease suppressive soils assessed by 28S LSU gene sequencing. Plos One. 9: e93893. PMID 24699870 DOI: 10.1371/Journal.Pone.0093893 |
0.733 |
|
| 2014 |
Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. Tackling soil diversity with the assembly of large, complex metagenomes. Proceedings of the National Academy of Sciences of the United States of America. 111: 4904-9. PMID 24632729 DOI: 10.1073/Pnas.1402564111 |
0.608 |
|
| 2014 |
Zhou J, Deng Y, Zhang P, Xue K, Liang Y, Van Nostrand JD, Yang Y, He Z, Wu L, Stahl DA, Hazen TC, Tiedje JM, Arkin AP. Stochasticity, succession, and environmental perturbations in a fluidic ecosystem. Proceedings of the National Academy of Sciences of the United States of America. 111: E836-45. PMID 24550501 DOI: 10.1073/Pnas.1324044111 |
0.489 |
|
| 2014 |
Luo C, Rodriguez-R LM, Johnston ER, Wu L, Cheng L, Xue K, Tu Q, Deng Y, He Z, Shi JZ, Yuan MM, Sherry RA, Li D, Luo Y, Schuur EA, ... ... Tiedje JM, et al. Soil microbial community responses to a decade of warming as revealed by comparative metagenomics. Applied and Environmental Microbiology. 80: 1777-86. PMID 24375144 DOI: 10.1128/Aem.03712-13 |
0.752 |
|
| 2014 |
Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, Brown CT, Porras-Alfaro A, Kuske CR, Tiedje JM. Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Research. 42: D633-42. PMID 24288368 DOI: 10.1093/Nar/Gkt1244 |
0.367 |
|
| 2014 |
Deng J, Brettar I, Luo C, Auchtung J, Konstantinidis KT, Rodrigues JL, Höfle M, Tiedje JM. Stability, genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea. Environmental Microbiology. 16: 1854-66. PMID 24286373 DOI: 10.1111/1462-2920.12344 |
0.724 |
|
| 2014 |
Yang Y, Quensen J, Mathieu J, Wang Q, Wang J, Li M, Tiedje JM, Alvarez PJ. Pyrosequencing reveals higher impact of silver nanoparticles than Ag+ on the microbial community structure of activated sludge. Water Research. 48: 317-25. PMID 24120408 DOI: 10.1016/J.Watres.2013.09.046 |
0.315 |
|
| 2014 |
Stres B, Sul WJ, Murovec B, Tiedje JM. Correction: Recently deglaciated high-altitude soils of the himalaya: Diverse environments, heterogenous bacterial communities and long-range dust inputs from the upper troposphere (PLoS ONE) Plos One. 9. DOI: 10.1371/annotation/1406824c-f082-400b-8fc7-4995c97a6249 |
0.653 |
|
| 2014 |
Penton CR, Deenik JL, Popp BN, Bruland GL, Engstrom P, Mueller J, Worden A, Tiedje JM. Assessing nitrogen transformations in a flooded agroecosystem using the isotope pairing technique and nitrogen functional gene abundances Soil Science. 179: 2-10. DOI: 10.1097/Ss.0000000000000038 |
0.704 |
|
| 2014 |
Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. Tackling soil diversity with the assembly of large, complex metagenomes (Proceedings of the National Academy of Sciences of the United States of America (2014) 111, 13, (4904-4909) doi:10.1073/pnas.1402564111) Proceedings of the National Academy of Sciences of the United States of America. 111: 6115. DOI: 10.1073/Pnas.1405719111 |
0.544 |
|
| 2014 |
Leigh MB, Wu WM, Cardenas E, Uhlik O, Carroll S, Gentry T, Marsh TL, Zhou J, Jardine P, Criddle CS, Tiedje JM. Microbial communities biostimulated by ethanol during uranium (VI) bioremediation in contaminated sediment as shown by stable isotope probing Frontiers of Environmental Science & Engineering. DOI: 10.1007/S11783-014-0721-6 |
0.484 |
|
| 2013 |
Young VB, Raffals LH, Huse SM, Vital M, Dai D, Schloss PD, Brulc JM, Antonopoulos DA, Arrieta RL, Kwon JH, Reddy KG, Hubert NA, Grim SL, Vineis JH, Dalal S, ... ... Tiedje JM, et al. Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis. Microbiome. 1: 9. PMID 24451366 DOI: 10.1186/2049-2618-1-9 |
0.305 |
|
| 2013 |
Vital M, Penton CR, Wang Q, Young VB, Antonopoulos DA, Sogin ML, Morrison HG, Raffals L, Chang EB, Huffnagle GB, Schmidt TM, Cole JR, Tiedje JM. A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community. Microbiome. 1: 8. PMID 24451334 DOI: 10.1186/2049-2618-1-8 |
0.726 |
|
| 2013 |
Van Doan T, Lee TK, Shukla SK, Tiedje JM, Park J. Increased nitrous oxide accumulation by bioelectrochemical denitrification under autotrophic conditions: kinetics and expression of denitrification pathway genes. Water Research. 47: 7087-97. PMID 24210359 DOI: 10.1016/J.Watres.2013.08.041 |
0.324 |
|
| 2013 |
Fish JA, Chai B, Wang Q, Sun Y, Brown CT, Tiedje JM, Cole JR. FunGene: the functional gene pipeline and repository. Frontiers in Microbiology. 4: 291. PMID 24101916 DOI: 10.3389/Fmicb.2013.00291 |
0.389 |
|
| 2013 |
Stres B, Sul WJ, Murovec B, Tiedje JM. Recently deglaciated high-altitude soils of the Himalaya: diverse environments, heterogenous bacterial communities and long-range dust inputs from the upper troposphere. Plos One. 8: e76440. PMID 24086740 DOI: 10.1371/Journal.Pone.0076440 |
0.681 |
|
| 2013 |
Penton CR, Johnson TA, Quensen JF, Iwai S, Cole JR, Tiedje JM. Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter. Frontiers in Microbiology. 4: 279. PMID 24062736 DOI: 10.3389/Fmicb.2013.00279 |
0.771 |
|
| 2013 |
Wang Q, Quensen JF, Fish JA, Lee TK, Sun Y, Tiedje JM, Cole JR. Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool. Mbio. 4: e00592-13. PMID 24045641 DOI: 10.1128/Mbio.00592-13 |
0.426 |
|
| 2013 |
Penton CR, St Louis D, Cole JR, Luo Y, Wu L, Schuur EA, Zhou J, Tiedje JM. Fungal diversity in permafrost and tallgrass prairie soils under experimental warming conditions. Applied and Environmental Microbiology. 79: 7063-72. PMID 24014534 DOI: 10.1128/Aem.01702-13 |
0.765 |
|
| 2013 |
Rhodes AN, Fulthorpe RR, Tiedje JM. Probing the functional diversity of global pristine soil communities with 3-chlorobenzoate reveals that communities of generalists dominate catabolic transformation. Applied and Environmental Microbiology. 79: 6932-40. PMID 23995940 DOI: 10.1128/Aem.01905-13 |
0.431 |
|
| 2013 |
Taketani RG, Lima AB, da Conceição Jesus E, Teixeira WG, Tiedje JM, Tsai SM. Bacterial community composition of anthropogenic biochar and Amazonian anthrosols assessed by 16S rRNA gene 454 pyrosequencing. Antonie Van Leeuwenhoek. 104: 233-42. PMID 23743632 DOI: 10.1007/S10482-013-9942-0 |
0.412 |
|
| 2013 |
Hinsa-Leasure SM, Koid C, Tiedje JM, Schultzhaus JN. Biofilm formation by Psychrobacter arcticus and the role of a large adhesin in attachment to surfaces. Applied and Environmental Microbiology. 79: 3967-73. PMID 23603675 DOI: 10.1128/Aem.00867-13 |
0.31 |
|
| 2013 |
Rachid CT, Santos AL, Piccolo MC, Balieiro FC, Coutinho HL, Peixoto RS, Tiedje JM, Rosado AS. Effect of sugarcane burning or green harvest methods on the Brazilian Cerrado soil bacterial community structure. Plos One. 8: e59342. PMID 23533619 DOI: 10.1371/Journal.Pone.0059342 |
0.428 |
|
| 2013 |
Zhu YG, Johnson TA, Su JQ, Qiao M, Guo GX, Stedtfeld RD, Hashsham SA, Tiedje JM. Diverse and abundant antibiotic resistance genes in Chinese swine farms. Proceedings of the National Academy of Sciences of the United States of America. 110: 3435-40. PMID 23401528 DOI: 10.1073/Pnas.1222743110 |
0.544 |
|
| 2013 |
Rodrigues JL, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SM, Feigl B, Tiedje JM, Bohannan BJ, Nüsslein K. Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities. Proceedings of the National Academy of Sciences of the United States of America. 110: 988-93. PMID 23271810 DOI: 10.1073/Pnas.1220608110 |
0.613 |
|
| 2013 |
Sul WJ, Asuming-Brempong S, Wang Q, Tourlousse DM, Penton CR, Deng Y, Rodrigues JLM, Adiku SGK, Jones JW, Zhou J, Cole JR, Tiedje JM. Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon Soil Biology and Biochemistry. 65: 33-38. DOI: 10.1016/J.Soilbio.2013.05.007 |
0.812 |
|
| 2013 |
Penton CR, Deenik JL, Popp BN, Bruland GL, Engstrom P, St. Louis D, Tiedje J. Importance of sub-surface rhizosphere-mediated coupled nitrification-denitrification in a flooded agroecosystem in Hawaii Soil Biology and Biochemistry. 57: 362-373. DOI: 10.1016/J.Soilbio.2012.10.018 |
0.671 |
|
| 2013 |
Liang C, Duncan DS, Balser TC, Tiedje JM, Jackson RD. Soil microbial residue storage linked to soil legacy under biofuel cropping systems in southern Wisconsin, USA Soil Biology and Biochemistry. 57: 939-942. DOI: 10.1016/J.Soilbio.2012.09.006 |
0.778 |
|
| 2012 |
Rosenzweig N, Tiedje JM, Quensen JF, Meng Q, Hao JJ. Microbial Communities Associated with Potato Common Scab-Suppressive Soil Determined by Pyrosequencing Analyses. Plant Disease. 96: 718-725. PMID 30727523 DOI: 10.1094/Pdis-07-11-0571 |
0.406 |
|
| 2012 |
Ormeño-Orrillo E, Rogel MA, Chueire LM, Tiedje JM, Martínez-Romero E, Hungria M. Genome sequences of Burkholderia sp. strains CCGE1002 and H160, isolated from legume nodules in Mexico and Brazil. Journal of Bacteriology. 194: 6927. PMID 23209196 DOI: 10.1128/Jb.01756-12 |
0.339 |
|
| 2012 |
Oh S, Buddenborg S, Yoder-Himes DR, Tiedje JM, Konstantinidis KT. Genomic diversity of Escherichia isolates from diverse habitats. Plos One. 7: e47005. PMID 23056556 DOI: 10.1371/Journal.Pone.0047005 |
0.579 |
|
| 2012 |
He R, Wooller MJ, Pohlman JW, Quensen J, Tiedje JM, Leigh MB. Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes. Applied and Environmental Microbiology. 78: 4715-23. PMID 22522690 DOI: 10.1128/Aem.00853-12 |
0.321 |
|
| 2012 |
He R, Wooller MJ, Pohlman JW, Catranis C, Quensen J, Tiedje JM, Leigh MB. Identification of functionally active aerobic methanotrophs in sediments from an arctic lake using stable isotope probing. Environmental Microbiology. 14: 1403-19. PMID 22429394 DOI: 10.1111/J.1462-2920.2012.02725.X |
0.323 |
|
| 2012 |
Caro-Quintero A, Auchtung J, Deng J, Brettar I, Höfle M, Tiedje JM, Konstantinidis KT. Genome sequencing of five Shewanella baltica strains recovered from the oxic-anoxic interface of the Baltic Sea. Journal of Bacteriology. 194: 1236. PMID 22328742 DOI: 10.1128/Jb.06468-11 |
0.613 |
|
| 2012 |
Li R, Tiedje JM, Chiu C, Worden RM. Soluble electron shuttles can mediate energy taxis toward insoluble electron acceptors. Environmental Science & Technology. 46: 2813-20. PMID 22324484 DOI: 10.1021/Es204302W |
0.343 |
|
| 2012 |
Kim SH, Harzman C, Davis JK, Hutcheson R, Broderick JB, Marsh TL, Tiedje JM. Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction. Bmc Microbiology. 12: 21. PMID 22316246 DOI: 10.1186/1471-2180-12-21 |
0.789 |
|
| 2012 |
Looft T, Johnson TA, Allen HK, Bayles DO, Alt DP, Stedtfeld RD, Sul WJ, Stedtfeld TM, Chai B, Cole JR, Hashsham SA, Tiedje JM, Stanton TB. In-feed antibiotic effects on the swine intestinal microbiome. Proceedings of the National Academy of Sciences of the United States of America. 109: 1691-6. PMID 22307632 DOI: 10.1073/Pnas.1120238109 |
0.706 |
|
| 2012 |
Green SJ, Prakash O, Jasrotia P, Overholt WA, Cardenas E, Hubbard D, Tiedje JM, Watson DB, Schadt CW, Brooks SC, Kostka JE. Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site. Applied and Environmental Microbiology. 78: 1039-47. PMID 22179233 DOI: 10.1128/Aem.06435-11 |
0.397 |
|
| 2012 |
Liang C, Jesus EdC, Duncan DS, Jackson RD, Tiedje JM, Balser TC. Soil microbial communities under model biofuel cropping systems in southern Wisconsin, USA: Impact of crop species and soil properties Applied Soil Ecology. 54: 24-31. DOI: 10.1016/J.Apsoil.2011.11.015 |
0.792 |
|
| 2011 |
Sul WJ, Cole JR, Jesus Eda C, Wang Q, Farris RJ, Fish JA, Tiedje JM. Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering. Proceedings of the National Academy of Sciences of the United States of America. 108: 14637-42. PMID 21873204 DOI: 10.1073/Pnas.1111435108 |
0.665 |
|
| 2011 |
Rodrigues JL, Serres MH, Tiedje JM. Large-scale comparative phenotypic and genomic analyses reveal ecological preferences of shewanella species and identify metabolic pathways conserved at the genus level. Applied and Environmental Microbiology. 77: 5352-60. PMID 21642407 DOI: 10.1128/Aem.00097-11 |
0.603 |
|
| 2011 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Tiedje JM, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823 |
0.677 |
|
| 2011 |
Patrauchan MA, Parnell JJ, McLeod MP, Florizone C, Tiedje JM, Eltis LD. Genomic analysis of the phenylacetyl-CoA pathway in Burkholderia xenovorans LB400. Archives of Microbiology. 193: 641-50. PMID 21519854 DOI: 10.1007/S00203-011-0705-X |
0.633 |
|
| 2011 |
Van Nostrand JD, Wu L, Wu WM, Huang Z, Gentry TJ, Deng Y, Carley J, Carroll S, He Z, Gu B, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, ... Tiedje JM, et al. Dynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquifer. Applied and Environmental Microbiology. 77: 3860-9. PMID 21498771 DOI: 10.1128/Aem.01981-10 |
0.489 |
|
| 2011 |
Iwai S, Johnson TA, Chai B, Hashsham SA, Tiedje JM. Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples. Applied and Environmental Microbiology. 77: 3551-7. PMID 21498766 DOI: 10.1128/Aem.00331-11 |
0.554 |
|
| 2011 |
Lee TK, Lee J, Sul WJ, Iwai S, Chai B, Tiedje JM, Park J. Novel biphenyl-oxidizing bacteria and dioxygenase genes from a korean tidal mudflat. Applied and Environmental Microbiology. 77: 3888-91. PMID 21498748 DOI: 10.1128/Aem.00023-11 |
0.671 |
|
| 2011 |
Luo C, Walk ST, Gordon DM, Feldgarden M, Tiedje JM, Konstantinidis KT. Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proceedings of the National Academy of Sciences of the United States of America. 108: 7200-5. PMID 21482770 DOI: 10.1073/Pnas.1015622108 |
0.559 |
|
| 2011 |
Vishnivetskaya TA, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Dalin E, Tice H, Bruce DC, Goodwin LA, Pitluck S, Saunders E, Brettin T, Detter C, Han C, Larimer F, ... ... Tiedje JM, et al. Complete genome sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b. Journal of Bacteriology. 193: 2880-1. PMID 21460088 DOI: 10.1128/Jb.00303-11 |
0.608 |
|
| 2011 |
Cruz-García C, Murray AE, Rodrigues JL, Gralnick JA, McCue LA, Romine MF, Löffler FE, Tiedje JM. Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1. Bmc Microbiology. 11: 64. PMID 21450087 DOI: 10.1186/1471-2180-11-64 |
0.794 |
|
| 2011 |
Li R, Auchtung JM, Tiedje JM, Worden RM. Shewanella oneidensis MR-1 chemotaxis in a diffusion gradient chamber. Environmental Science & Technology. 45: 1014-20. PMID 21174460 DOI: 10.1021/Es102425P |
0.355 |
|
| 2011 |
Cardenas E, Cole JR, Tiedje JM, Park J. Microbial community analysis using RDP II (ribosomal database project II): Methods, tools and new advances Environmental Engineering Research. 16: 3-9. DOI: 10.4491/Eer.2009.14.1.003 |
0.406 |
|
| 2011 |
Mueller RC, Nüsslein K, Rodrigues J, Tiedje J, Pellizari V, Feigl B, Bohannan B. Microbial responses to changes in land use Nature Precedings. 6: 1-1. DOI: 10.1038/Npre.2011.5505.1 |
0.52 |
|
| 2011 |
Iwai S, Chai B, Jesus EdC, Penton CR, Lee TK, Cole JR, Tiedje JM. Gene-Targeted Metagenomics (GT Metagenomics) to Explore the Extensive Diversity of Genes of Interest in Microbial Communities Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. 235-243. DOI: 10.1002/9781118010518.ch28 |
0.691 |
|
| 2010 |
Gilbert JA, Meyer F, Jansson J, Gordon J, Pace N, Tiedje J, Ley R, Fierer N, Field D, Kyrpides N, Glöckner FO, Klenk HP, Wommack KE, Glass E, Docherty K, et al. The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Standards in Genomic Sciences. 3: 249-53. PMID 21304728 DOI: 10.4056/Aigs.1443528 |
0.541 |
|
| 2010 |
Gao H, Barua S, Liang Y, Wu L, Dong Y, Reed S, Chen J, Culley D, Kennedy D, Yang Y, He Z, Nealson KH, Fredrickson JK, Tiedje JM, Romine M, et al. Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration. Microbial Biotechnology. 3: 455-66. PMID 21255343 DOI: 10.1111/J.1751-7915.2010.00181.X |
0.459 |
|
| 2010 |
Stres B, Philippot L, Faganeli J, Tiedje JM. Frequent freeze-thaw cycles yield diminished yet resistant and responsive microbial communities in two temperate soils: a laboratory experiment. Fems Microbiology Ecology. 74: 323-35. PMID 20735477 DOI: 10.1111/J.1574-6941.2010.00951.X |
0.397 |
|
| 2010 |
Cardenas E, Wu WM, Leigh MB, Carley J, Carroll S, Gentry T, Luo J, Watson D, Gu B, Ginder-Vogel M, Kitanidis PK, Jardine PM, Zhou J, Criddle CS, Marsh TL, ... Tiedje JM, et al. Significant association between sulfate-reducing bacteria and uranium-reducing microbial communities as revealed by a combined massively parallel sequencing-indicator species approach. Applied and Environmental Microbiology. 76: 6778-86. PMID 20729318 DOI: 10.1128/Aem.01097-10 |
0.496 |
|
| 2010 |
Hinsa-Leasure SM, Bhavaraju L, Rodrigues JL, Bakermans C, Gilichinsky DA, Tiedje JM. Characterization of a bacterial community from a Northeast Siberian seacoast permafrost sample. Fems Microbiology Ecology. 74: 103-13. PMID 20695892 DOI: 10.1111/J.1574-6941.2010.00945.X |
0.619 |
|
| 2010 |
Teixeira LC, Peixoto RS, Cury JC, Sul WJ, Pellizari VH, Tiedje J, Rosado AS. Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica. The Isme Journal. 4: 989-1001. PMID 20357834 DOI: 10.1038/Ismej.2010.35 |
0.691 |
|
| 2010 |
Xu M, Wu WM, Wu L, He Z, Van Nostrand JD, Deng Y, Luo J, Carley J, Ginder-Vogel M, Gentry TJ, Gu B, Watson D, Jardine PM, Marsh TL, Tiedje JM, et al. Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation. The Isme Journal. 4: 1060-70. PMID 20237512 DOI: 10.1038/Ismej.2010.31 |
0.521 |
|
| 2010 |
Oh S, Yoder-Himes DR, Tiedje J, Park J, Konstantinidis KT. Evaluating the performance of oligonucleotide microarrays for bacterial strains with increasing genetic divergence from the reference strain. Applied and Environmental Microbiology. 76: 2980-8. PMID 20228107 DOI: 10.1128/Aem.02826-09 |
0.554 |
|
| 2010 |
Hemme CL, Deng Y, Gentry TJ, Fields MW, Wu L, Barua S, Barry K, Tringe SG, Watson DB, He Z, Hazen TC, Tiedje JM, Rubin EM, Zhou J. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. The Isme Journal. 4: 660-72. PMID 20182523 DOI: 10.1038/Ismej.2009.154 |
0.527 |
|
| 2010 |
Ayala-del-Río HL, Chain PS, Grzymski JJ, Ponder MA, Ivanova N, Bergholz PW, Di Bartolo G, Hauser L, Land M, Bakermans C, Rodrigues D, Klappenbach J, Zarka D, Larimer F, Richardson P, ... ... Tiedje JM, et al. The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth. Applied and Environmental Microbiology. 76: 2304-12. PMID 20154119 DOI: 10.1128/Aem.02101-09 |
0.788 |
|
| 2010 |
Yoder-Himes DR, Konstantinidis KT, Tiedje JM. Identification of potential therapeutic targets for Burkholderia cenocepacia by comparative transcriptomics. Plos One. 5: e8724. PMID 20090946 DOI: 10.1371/Journal.Pone.0008724 |
0.596 |
|
| 2010 |
Iwai S, Chai B, Sul WJ, Cole JR, Hashsham SA, Tiedje JM. Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. The Isme Journal. 4: 279-85. PMID 19776767 DOI: 10.1038/Ismej.2009.104 |
0.669 |
|
| 2010 |
Parnell JJ, Denef VJ, Park J, Tsoi T, Tiedje JM. Environmentally relevant parameters affecting PCB degradation: carbon source- and growth phase-mitigated effects of the expression of the biphenyl pathway and associated genes in Burkholderia xenovorans LB400. Biodegradation. 21: 147-56. PMID 19672561 DOI: 10.1007/S10532-009-9289-4 |
0.613 |
|
| 2010 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Tiedje JM, et al. The “Minimum Information about an ENvironmental Sequence” (MIENS) specification Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.5252.1 |
0.554 |
|
| 2010 |
da Jesus EC, Susilawati E, Smith SL, Wang Q, Chai B, Farris R, Rodrigues JLM, Thelen KD, Tiedje JM. Bacterial communities in the rhizosphere of biofuel crops grown on marginal lands as evaluated by 16S rRNA gene pyrosequences Bioenergy Research. 3: 20-27. DOI: 10.1007/S12155-009-9073-7 |
0.434 |
|
| 2009 |
Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, ... ... Tiedje JM, et al. Genomics. Genome project standards in a new era of sequencing. Science (New York, N.Y.). 326: 236-7. PMID 19815760 DOI: 10.1126/Science.1180614 |
0.531 |
|
| 2009 |
Konstantinidis KT, Serres MH, Romine MF, Rodrigues JL, Auchtung J, McCue LA, Lipton MS, Obraztsova A, Giometti CS, Nealson KH, Fredrickson JK, Tiedje JM. Comparative systems biology across an evolutionary gradient within the Shewanella genus. Proceedings of the National Academy of Sciences of the United States of America. 106: 15909-14. PMID 19805231 DOI: 10.1073/Pnas.0902000106 |
0.684 |
|
| 2009 |
Walk ST, Alm EW, Gordon DM, Ram JL, Toranzos GA, Tiedje JM, Whittam TS. Cryptic lineages of the genus Escherichia. Applied and Environmental Microbiology. 75: 6534-44. PMID 19700542 DOI: 10.1128/Aem.01262-09 |
0.309 |
|
| 2009 |
Sul WJ, Park J, Quensen JF, Rodrigues JL, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Applied and Environmental Microbiology. 75: 5501-6. PMID 19648381 DOI: 10.1128/Aem.00121-09 |
0.748 |
|
| 2009 |
Van Nostrand JD, Wu WM, Wu L, Deng Y, Carley J, Carroll S, He Z, Gu B, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, Tiedje JM, Hazen TC, et al. GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer. Environmental Microbiology. 11: 2611-26. PMID 19624708 DOI: 10.1111/J.1462-2920.2009.01986.X |
0.506 |
|
| 2009 |
Rodríguez-Minguela CM, Apajalahti JH, Chai B, Cole JR, Tiedje JM. Worldwide prevalence of class 2 integrases outside the clinical setting is associated with human impact. Applied and Environmental Microbiology. 75: 5100-10. PMID 19502434 DOI: 10.1128/Aem.00133-09 |
0.378 |
|
| 2009 |
da C Jesus E, Marsh TL, Tiedje JM, de S Moreira FM. Changes in land use alter the structure of bacterial communities in Western Amazon soils. The Isme Journal. 3: 1004-11. PMID 19440233 DOI: 10.1038/Ismej.2009.47 |
0.402 |
|
| 2009 |
Gao H, Yang ZK, Barua S, Reed SB, Romine MF, Nealson KH, Fredrickson JK, Tiedje JM, Zhou J. Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA. The Isme Journal. 3: 966-76. PMID 19387485 DOI: 10.1038/Ismej.2009.40 |
0.481 |
|
| 2009 |
Vishnivetskaya TA, Kathariou S, Tiedje JM. The Exiguobacterium genus: biodiversity and biogeography. Extremophiles : Life Under Extreme Conditions. 13: 541-55. PMID 19381755 DOI: 10.1007/S00792-009-0243-5 |
0.378 |
|
| 2009 |
Stres B, Tiedje JM, Murovec B. BEsTRF: a tool for optimal resolution of terminal-restriction fragment length polymorphism analysis based on user-defined primer-enzyme-sequence databases. Bioinformatics (Oxford, England). 25: 1556-8. PMID 19369501 DOI: 10.1093/Bioinformatics/Btp254 |
0.305 |
|
| 2009 |
Rodrigues DF, da C Jesus E, Ayala-Del-Río HL, Pellizari VH, Gilichinsky D, Sepulveda-Torres L, Tiedje JM. Biogeography of two cold-adapted genera: Psychrobacter and Exiguobacterium. The Isme Journal. 3: 658-65. PMID 19322243 DOI: 10.1038/Ismej.2009.25 |
0.799 |
|
| 2009 |
Yoder-Himes DR, Chain PS, Zhu Y, Wurtzel O, Rubin EM, Tiedje JM, Sorek R. Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 3976-81. PMID 19234113 DOI: 10.1073/Pnas.0813403106 |
0.615 |
|
| 2009 |
Ramette A, Tiedje JM, Boetius A. Impact of space, time and complex environments on microbial communities. Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases. 15: 60-2. PMID 19220358 DOI: 10.1111/J.1469-0691.2008.02692.X |
0.317 |
|
| 2009 |
Bergholz PW, Bakermans C, Tiedje JM. Psychrobacter arcticus 273-4 uses resource efficiency and molecular motion adaptations for subzero temperature growth. Journal of Bacteriology. 191: 2340-52. PMID 19168616 DOI: 10.1128/Jb.01377-08 |
0.752 |
|
| 2009 |
Bakermans C, Sloup RE, Zarka DG, Tiedje JM, Thomashow MF. Development and use of genetic system to identify genes required for efficient low-temperature growth of Psychrobacter arcticus 273-4. Extremophiles : Life Under Extreme Conditions. 13: 21-30. PMID 18818866 DOI: 10.1007/S00792-008-0193-3 |
0.301 |
|
| 2009 |
Vogel TM, Simonet P, Hirsch PR, Jansson JK, Tiedje JM, van Elsas JD, Nalin R, Philippot L, Bailey MJ. Advantages of the metagenomic approach for soil exploration: Reply from Vogel et al. Nature Reviews Microbiology. 7: 756-757. DOI: 10.1038/Nrmicro2119-C3 |
0.595 |
|
| 2009 |
Vogel TM, Simonet P, Jansson JK, Hirsch PR, Tiedje JM, van Elsas JD, Bailey MJ, Nalin R, Philippot L. TerraGenome: A consortium for the sequencing of a soil metagenome Nature Reviews Microbiology. 7: 252. DOI: 10.1038/Nrmicro2119 |
0.594 |
|
| 2009 |
da C Jesus E, Marsh TL, Tiedje JM, de S Moreira FM. Erratum: Changes in land use alter the structure of bacterial communities in Western Amazon soils The Isme Journal. 3: 1222-1222. DOI: 10.1038/Ismej.2009.98 |
0.377 |
|
| 2008 |
Rodrigues DF, Ivanova N, He Z, Huebner M, Zhou J, Tiedje JM. Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach. Bmc Genomics. 9: 547. PMID 19019206 DOI: 10.1186/1471-2164-9-547 |
0.665 |
|
| 2008 |
Cardenas E, Tiedje JM. New tools for discovering and characterizing microbial diversity. Current Opinion in Biotechnology. 19: 544-9. PMID 18984052 DOI: 10.1016/J.Copbio.2008.10.010 |
0.38 |
|
| 2008 |
Fredrickson JK, Romine MF, Beliaev AS, Auchtung JM, Driscoll ME, Gardner TS, Nealson KH, Osterman AL, Pinchuk G, Reed JL, Rodionov DA, Rodrigues JL, Saffarini DA, Serres MH, Spormann AM, ... ... Tiedje JM, et al. Towards environmental systems biology of Shewanella. Nature Reviews. Microbiology. 6: 592-603. PMID 18604222 DOI: 10.1038/Nrmicro1947 |
0.56 |
|
| 2008 |
Wu L, Kellogg L, Devol AH, Tiedje JM, Zhou J. Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico. Applied and Environmental Microbiology. 74: 4516-29. PMID 18515485 DOI: 10.1128/Aem.02751-07 |
0.53 |
|
| 2008 |
Cardenas E, Wu WM, Leigh MB, Carley J, Carroll S, Gentry T, Luo J, Watson D, Gu B, Ginder-Vogel M, Kitanidis PK, Jardine PM, Zhou J, Criddle CS, Marsh TL, ... Tiedje JM, et al. Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels. Applied and Environmental Microbiology. 74: 3718-29. PMID 18456853 DOI: 10.1128/Aem.02308-07 |
0.516 |
|
| 2008 |
Stedtfeld RD, Baushke SW, Tourlousse DM, Miller SM, Stedtfeld TM, Gulari E, Tiedje JM, Hashsham SA. Development and experimental validation of a predictive threshold cycle equation for quantification of virulence and marker genes by high-throughput nanoliter-volume PCR on the OpenArray platform. Applied and Environmental Microbiology. 74: 3831-8. PMID 18424532 DOI: 10.1128/Aem.02743-07 |
0.318 |
|
| 2008 |
Ponder MA, Thomashow MF, Tiedje JM. Metabolic activity of Siberian permafrost isolates, Psychrobacter arcticus and Exiguobacterium sibiricum, at low water activities. Extremophiles : Life Under Extreme Conditions. 12: 481-90. PMID 18335164 DOI: 10.1007/S00792-008-0151-0 |
0.635 |
|
| 2008 |
Wu L, Liu X, Fields MW, Thompson DK, Bagwell CE, Tiedje JM, Hazen TC, Zhou J. Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness. The Isme Journal. 2: 642-55. PMID 18309358 DOI: 10.1038/Ismej.2008.23 |
0.476 |
|
| 2008 |
Miller SM, Tourlousse DM, Stedtfeld RD, Baushke SW, Herzog AB, Wick LM, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA. In situ-synthesized virulence and marker gene biochip for detection of bacterial pathogens in water. Applied and Environmental Microbiology. 74: 2200-9. PMID 18245235 DOI: 10.1128/Aem.01962-07 |
0.312 |
|
| 2008 |
Rodrigues DF, Tiedje JM. Coping with our cold planet. Applied and Environmental Microbiology. 74: 1677-86. PMID 18203855 DOI: 10.1128/Aem.02000-07 |
0.568 |
|
| 2008 |
Asuming-Brempong S, Gantner S, Adiku SGK, Archer G, Edusei V, Tiedje JM. Changes in the biodiversity of microbial populations in tropical soils under different fallow treatments Soil Biology and Biochemistry. 40: 2811-2818. DOI: 10.1016/J.Soilbio.2008.08.010 |
0.364 |
|
| 2007 |
Leigh MB, Pellizari VH, Uhlík O, Sutka R, Rodrigues J, Ostrom NE, Zhou J, Tiedje JM. Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs) Isme Journal. 1: 134-148. PMID 18043623 DOI: 10.1038/Ismej.2007.26 |
0.691 |
|
| 2007 |
Konstantinidis KT, Tiedje JM. Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Current Opinion in Microbiology. 10: 504-9. PMID 17923431 DOI: 10.1016/J.Mib.2007.08.006 |
0.541 |
|
| 2007 |
Hansen AA, Herbert RA, Mikkelsen K, Jensen LL, Kristoffersen T, Tiedje JM, Lomstein BA, Finster KW. Viability, diversity and composition of the bacterial community in a high Arctic permafrost soil from Spitsbergen, Northern Norway. Environmental Microbiology. 9: 2870-84. PMID 17922769 DOI: 10.1111/J.1462-2920.2007.01403.X |
0.427 |
|
| 2007 |
Wu WM, Carley J, Luo J, Ginder-Vogel MA, Cardenas E, Leigh MB, Hwang C, Kelly SD, Ruan C, Wu L, Van Nostrand J, Gentry T, Lowe K, Mehlhorn T, Carroll S, ... ... Tiedje J, et al. In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen. Environmental Science & Technology. 41: 5716-23. PMID 17874778 DOI: 10.1021/Es062657B |
0.45 |
|
| 2007 |
Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology. 73: 5261-7. PMID 17586664 DOI: 10.1128/Aem.00062-07 |
0.335 |
|
| 2007 |
Smith DJ, Park J, Tiedje JM, Mohn WW. A large gene cluster in Burkholderia xenovorans encoding abietane diterpenoid catabolism. Journal of Bacteriology. 189: 6195-204. PMID 17586638 DOI: 10.1128/Jb.00179-07 |
0.376 |
|
| 2007 |
Gilichinsky DA, Wilson GS, Friedmann EI, McKay CP, Sletten RS, Rivkina EM, Vishnivetskaya TA, Erokhina LG, Ivanushkina NE, Kochkina GA, Shcherbakova VA, Soina VS, Spirina EV, Vorobyova EA, Fyodorov-Davydov DG, ... ... Tiedje JM, et al. Microbial populations in Antarctic permafrost: biodiversity, state, age, and implication for astrobiology. Astrobiology. 7: 275-311. PMID 17480161 DOI: 10.1089/Ast.2006.0012 |
0.368 |
|
| 2007 |
Vishnivetskaya TA, Siletzky R, Jefferies N, Tiedje JM, Kathariou S. Effect of low temperature and culture media on the growth and freeze-thawing tolerance of Exiguobacterium strains. Cryobiology. 54: 234-40. PMID 17382311 DOI: 10.1016/J.Cryobiol.2007.01.008 |
0.331 |
|
| 2007 |
O'Sullivan LA, Weightman AJ, Jones TH, Marchbank AM, Tiedje JM, Mahenthiralingam E. Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis. Environmental Microbiology. 9: 1017-34. PMID 17359273 DOI: 10.1111/J.1462-2920.2006.01228.X |
0.309 |
|
| 2007 |
Ramette A, Tiedje JM. Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem. Proceedings of the National Academy of Sciences of the United States of America. 104: 2761-6. PMID 17296935 DOI: 10.1073/Pnas.0610671104 |
0.337 |
|
| 2007 |
Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. International Journal of Systematic and Evolutionary Microbiology. 57: 81-91. PMID 17220447 DOI: 10.1099/Ijs.0.64483-0 |
0.566 |
|
| 2007 |
Zheng S, Ponder MA, Shih JY, Tiedje JM, Thomashow MF, Lubman DM. A proteomic analysis of Psychrobacter articus 273-4 adaptation to low temperature and salinity using a 2-D liquid mapping approach. Electrophoresis. 28: 467-88. PMID 17177241 DOI: 10.1002/Elps.200600173 |
0.621 |
|
| 2007 |
Rodrigues DF, Tiedje JM. Multi-locus real-time PCR for quantitation of bacteria in the environment reveals Exiguobacterium to be prevalent in permafrost. Fems Microbiology Ecology. 59: 489-99. PMID 17156079 DOI: 10.1111/J.1574-6941.2006.00233.X |
0.647 |
|
| 2007 |
Cruz-García C, Murray AE, Klappenbach JA, Stewart V, Tiedje JM. Respiratory nitrate ammonification by Shewanella oneidensis MR-1. Journal of Bacteriology. 189: 656-62. PMID 17098906 DOI: 10.1128/Jb.01194-06 |
0.785 |
|
| 2007 |
Griffin BM, Tiedje JM. Microbial reductive dehalogenation in Antarctic melt pond sediments Antarctic Science. 19: 411-416. DOI: 10.1017/S0954102007000570 |
0.686 |
|
| 2006 |
Konstantinidis KT, Ramette A, Tiedje JM. The bacterial species definition in the genomic era. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 1929-40. PMID 17062412 DOI: 10.1098/Rstb.2006.1920 |
0.564 |
|
| 2006 |
Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agulló L, Reyes VL, Hauser L, Córdova M, Gómez L, González M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, ... ... Tiedje JM, et al. Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proceedings of the National Academy of Sciences of the United States of America. 103: 15280-7. PMID 17030797 DOI: 10.1073/Pnas.0606924103 |
0.803 |
|
| 2006 |
Penton CR, Devol AH, Tiedje JM. Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments. Applied and Environmental Microbiology. 72: 6829-32. PMID 17021238 DOI: 10.1128/Aem.01254-06 |
0.725 |
|
| 2006 |
Parnell JJ, Park J, Denef V, Tsoi T, Hashsham S, Quensen J, Tiedje JM. Coping with polychlorinated biphenyl (PCB) toxicity: Physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress. Applied and Environmental Microbiology. 72: 6607-14. PMID 17021212 DOI: 10.1128/Aem.01129-06 |
0.617 |
|
| 2006 |
Konstantinidis KT, Ramette A, Tiedje JM. Toward a more robust assessment of intraspecies diversity, using fewer genetic markers. Applied and Environmental Microbiology. 72: 7286-93. PMID 16980418 DOI: 10.1128/Aem.01398-06 |
0.586 |
|
| 2006 |
Gao H, Obraztova A, Stewart N, Popa R, Fredrickson JK, Tiedje JM, Nealson KH, Zhou J. Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean. International Journal of Systematic and Evolutionary Microbiology. 56: 1911-6. PMID 16902030 DOI: 10.1099/Ijs.0.64354-0 |
0.491 |
|
| 2006 |
Vishnivetskaya TA, Petrova MA, Urbance J, Ponder M, Moyer CL, Gilichinsky DA, Tiedje JM. Bacterial community in ancient Siberian permafrost as characterized by culture and culture-independent methods. Astrobiology. 6: 400-14. PMID 16805696 DOI: 10.1089/Ast.2006.6.400 |
0.683 |
|
| 2006 |
Bakermans C, Ayala-del-Río HL, Ponder MA, Vishnivetskaya T, Gilichinsky D, Thomashow MF, Tiedje JM. Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost. International Journal of Systematic and Evolutionary Microbiology. 56: 1285-91. PMID 16738105 DOI: 10.1099/Ijs.0.64043-0 |
0.781 |
|
| 2006 |
Payne GW, Ramette A, Rose HL, Weightman AJ, Jones TH, Tiedje JM, Mahenthiralingam E. Application of a recA gene-based identification approach to the maize rhizosphere reveals novel diversity in Burkholderia species. Fems Microbiology Letters. 259: 126-32. PMID 16684112 DOI: 10.1111/J.1574-6968.2006.00257.X |
0.355 |
|
| 2006 |
Rodrigues JL, Kachel CA, Aiello MR, Quensen JF, Maltseva OV, Tsoi TV, Tiedje JM. Degradation of aroclor 1242 dechlorination products in sediments by Burkholderia xenovorans LB400(ohb) and Rhodococcus sp. strain RHA1(fcb). Applied and Environmental Microbiology. 72: 2476-82. PMID 16597946 DOI: 10.1128/Aem.72.4.2476-2482.2006 |
0.555 |
|
| 2006 |
Rodrigues DF, Goris J, Vishnivetskaya T, Gilichinsky D, Thomashow MF, Tiedje JM. Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov. Extremophiles : Life Under Extreme Conditions. 10: 285-94. PMID 16489412 DOI: 10.1007/S00792-005-0497-5 |
0.612 |
|
| 2006 |
Qiu X, Daly MJ, Vasilenko A, Omelchenko MV, Gaidamakova EK, Wu L, Zhou J, Sundin GW, Tiedje JM. Transcriptome analysis applied to survival of Shewanella oneidensis MR-1 exposed to ionizing radiation. Journal of Bacteriology. 188: 1199-204. PMID 16428429 DOI: 10.1128/Jb.188.3.1199-1204.2006 |
0.739 |
|
| 2006 |
Denef VJ, Klappenbach JA, Patrauchan MA, Florizone C, Rodrigues JL, Tsoi TV, Verstraete W, Eltis LD, Tiedje JM. Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400. Applied and Environmental Microbiology. 72: 585-95. PMID 16391095 DOI: 10.1128/AEM.72.1.585-595.2006 |
0.475 |
|
| 2005 |
Gilichinsky D, Rivkina E, Bakermans C, Shcherbakova V, Petrovskaya L, Ozerskaya S, Ivanushkina N, Kochkina G, Laurinavichuis K, Pecheritsina S, Fattakhova R, Tiedje JM. Biodiversity of cryopegs in permafrost. Fems Microbiology Ecology. 53: 117-28. PMID 16329934 DOI: 10.1016/J.Femsec.2005.02.003 |
0.352 |
|
| 2005 |
Ponder MA, Gilmour SJ, Bergholz PW, Mindock CA, Hollingsworth R, Thomashow MF, Tiedje JM. Characterization of potential stress responses in ancient Siberian permafrost psychroactive bacteria. Fems Microbiology Ecology. 53: 103-15. PMID 16329933 DOI: 10.1016/J.Femsec.2004.12.003 |
0.788 |
|
| 2005 |
Denef VJ, Patrauchan MA, Florizone C, Park J, Tsoi TV, Verstraete W, Tiedje JM, Eltis LD. Growth substrate- and phase-specific expression of biphenyl, benzoate, and C1 metabolic pathways in Burkholderia xenovorans LB400. Journal of Bacteriology. 187: 7996-8005. PMID 16291673 DOI: 10.1128/Jb.187.23.7996-8005.2005 |
0.301 |
|
| 2005 |
Beliaev AS, Klingeman DM, Klappenbach JA, Wu L, Romine MF, Tiedje JM, Nealson KH, Fredrickson JK, Zhou J. Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptors. Journal of Bacteriology. 187: 7138-45. PMID 16199584 DOI: 10.1128/Jb.187.20.7138-7145.2005 |
0.461 |
|
| 2005 |
Konstantinidis KT, Tiedje JM. Towards a genome-based taxonomy for prokaryotes. Journal of Bacteriology. 187: 6258-64. PMID 16159757 DOI: 10.1128/Jb.187.18.6258-6264.2005 |
0.583 |
|
| 2005 |
Etchebehere C, Tiedje J. Presence of two different active nirS nitrite reductase genes in a denitrifying Thauera sp. from a high-nitrate-removal-rate reactor. Applied and Environmental Microbiology. 71: 5642-5. PMID 16151169 DOI: 10.1128/Aem.71.9.5642-5645.2005 |
0.367 |
|
| 2005 |
Qiu X, Tiedje JM, Sundin GW. Genome-wide examination of the natural solar radiation response in Shewanella oneidensis MR-1. Photochemistry and Photobiology. 81: 1559-68. PMID 16022560 DOI: 10.1562/2005-04-15-Ra-490 |
0.696 |
|
| 2005 |
Qiu X, Sundin GW, Wu L, Zhou J, Tiedje JM. Comparative analysis of differentially expressed genes in Shewanella oneidensis MR-1 following exposure to UVC, UVB, and UVA radiation. Journal of Bacteriology. 187: 3556-64. PMID 15866945 DOI: 10.1128/Jb.187.10.3556-3564.2005 |
0.725 |
|
| 2005 |
Rivkina E, Laurinavichius K, McGrath J, Tiedje J, Shcherbakova V, Gilichinsky D. Microbial life in permafrost. Advances in Space Research : the Official Journal of the Committee On Space Research (Cospar). 33: 1215-21. PMID 15806703 DOI: 10.1016/J.Asr.2003.06.024 |
0.333 |
|
| 2005 |
Ramette A, LiPuma JJ, Tiedje JM. Species abundance and diversity of Burkholderia cepacia complex in the environment. Applied and Environmental Microbiology. 71: 1193-201. PMID 15746318 DOI: 10.1128/Aem.71.3.1193-1201.2005 |
0.3 |
|
| 2005 |
Konstantinidis KT, Tiedje JM. Genomic insights that advance the species definition for prokaryotes. Proceedings of the National Academy of Sciences of the United States of America. 102: 2567-72. PMID 15701695 DOI: 10.1073/Pnas.0409727102 |
0.569 |
|
| 2005 |
Kolker E, Picone AF, Galperin MY, Romine MF, Higdon R, Makarova KS, Kolker N, Anderson GA, Qiu X, Auberry KJ, Babnigg G, Beliaev AS, Edlefsen P, Elias DA, Gorby YA, ... ... Tiedje JM, et al. Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proceedings of the National Academy of Sciences of the United States of America. 102: 2099-104. PMID 15684069 DOI: 10.1073/Pnas.0409111102 |
0.791 |
|
| 2005 |
Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM. The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Research. 33: D294-6. PMID 15608200 DOI: 10.1093/Nar/Gki038 |
0.311 |
|
| 2004 |
Wu L, Thompson DK, Liu X, Fields MW, Bagwell CE, Tiedje JM, Zhou J. Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications. Environmental Science & Technology. 38: 6775-82. PMID 15669338 DOI: 10.1021/Es049508I |
0.527 |
|
| 2004 |
Qiu X, Sundin GW, Chai B, Tiedje JM. Survival of Shewanella oneidensis MR-1 after UV radiation exposure. Applied and Environmental Microbiology. 70: 6435-43. PMID 15528503 DOI: 10.1128/Aem.70.11.6435-6443.2004 |
0.69 |
|
| 2004 |
Goris J, De Vos P, Caballero-Mellado J, Park J, Falsen E, Quensen JF, Tiedje JM, Vandamme P. Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400T and relatives as Burkholderia xenovorans sp. nov. International Journal of Systematic and Evolutionary Microbiology. 54: 1677-81. PMID 15388727 DOI: 10.1099/Ijs.0.63101-0 |
0.318 |
|
| 2004 |
Griffin BM, Tiedje JM, Löffler FE. Anaerobic microbial reductive dechlorination of tetrachloroethene to predominately trans-1,2-dichloroethene. Environmental Science & Technology. 38: 4300-3. PMID 15382856 DOI: 10.1021/Es035439G |
0.746 |
|
| 2004 |
Qiu XY, Hurt RA, Wu LY, Chen CH, Tiedje JM, Zhou JZ. Detection and quantification of copper-denitrifying bacteria by quantitative competitive PCR. Journal of Microbiological Methods. 59: 199-210. PMID 15369856 DOI: 10.1016/J.Mimet.2004.07.008 |
0.394 |
|
| 2004 |
Ayala-Del-Río HL, Callister SJ, Criddle CS, Tiedje JM. Correspondence between community structure and function during succession in phenol- and phenol-plus-trichloroethene-fed sequencing batch reactors. Applied and Environmental Microbiology. 70: 4950-60. PMID 15294835 DOI: 10.1128/Aem.70.8.4950-4960.2004 |
0.792 |
|
| 2004 |
Zhou J, Xia B, Huang H, Palumbo AV, Tiedje JM. Microbial diversity and heterogeneity in sandy subsurface soils. Applied and Environmental Microbiology. 70: 1723-34. PMID 15006798 DOI: 10.1128/Aem.70.3.1723-1734.2004 |
0.52 |
|
| 2004 |
Konstantinidis KT, Tiedje JM. Trends between gene content and genome size in prokaryotic species with larger genomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 3160-5. PMID 14973198 DOI: 10.1073/Pnas.0308653100 |
0.555 |
|
| 2004 |
Stres B, Mahne I, Avgustin G, Tiedje JM. Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils. Applied and Environmental Microbiology. 70: 301-9. PMID 14711656 DOI: 10.1128/Aem.70.1.301-309.2004 |
0.411 |
|
| 2004 |
Gilichinsky D, Rivkina E, Shcherbakova V, Laurinavichuis K, Tiedje J. Supercooled water brines within permafrost-an unknown ecological niche for microorganisms: a model for astrobiology. Astrobiology. 3: 331-41. PMID 14577882 DOI: 10.1089/153110703769016424 |
0.333 |
|
| 2003 |
Dollhopf SL, Pariseau ML, Hashsham SA, Tiedje JM. Competitive and interactions affecting a fermentative spirochete in anaerobic chemostats. Microbial Ecology. 46: 1-11. PMID 14582492 |
0.773 |
|
| 2003 |
Denef VJ, Park J, Rodrigues JL, Tsoi TV, Hashsham SA, Tiedje JM. Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities. Environmental Microbiology. 5: 933-43. PMID 14510847 DOI: 10.1046/J.1462-2920.2003.00490.X |
0.613 |
|
| 2003 |
Dorofeeva LV, Krausova VI, Evtushenko LI, Tiedje JM. Agromyces albus sp. nov., isolated from a plant (Androsace sp.). International Journal of Systematic and Evolutionary Microbiology. 53: 1435-8. PMID 13130029 DOI: 10.1099/Ijs.0.02428-0 |
0.316 |
|
| 2003 |
Liu X, Tiquia SM, Holguin G, Wu L, Nold SC, Devol AH, Luo K, Palumbo AV, Tiedje JM, Zhou J. Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico. Applied and Environmental Microbiology. 69: 3549-60. PMID 12788762 DOI: 10.1128/Aem.69.6.3549-3560.2003 |
0.523 |
|
| 2003 |
Braker G, Tiedje JM. Nitric oxide reductase (norB) genes from pure cultures and environmental samples. Applied and Environmental Microbiology. 69: 3476-83. PMID 12788753 DOI: 10.1128/Aem.69.6.3476-3483.2003 |
0.382 |
|
| 2003 |
Sung Y, Ritalahti KM, Sanford RA, Urbance JW, Flynn SJ, Tiedje JM, Löffler FE. Characterization of two tetrachloroethene-reducing, acetate-oxidizing anaerobic bacteria and their description as Desulfuromonas michiganensis sp. nov. Applied and Environmental Microbiology. 69: 2964-74. PMID 12732573 DOI: 10.1128/Aem.69.5.2964-2974.2003 |
0.717 |
|
| 2003 |
Yan T, Fields MW, Wu L, Zu Y, Tiedje JM, Zhou J. Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater. Environmental Microbiology. 5: 13-24. PMID 12542709 DOI: 10.1046/J.1462-2920.2003.00393.X |
0.523 |
|
| 2003 |
Treves DS, Xia B, Zhou J, Tiedje JM. A two-species test of the hypothesis that spatial isolation influences microbial diversity in soil Microbial Ecology. 45: 20-28. PMID 12415419 DOI: 10.1007/S00248-002-1044-X |
0.524 |
|
| 2003 |
Lendvay JM, Löffler FE, Dollhopf M, Aiello MR, Daniels G, Fathepure BZ, Gebhard M, Heine R, Helton R, Shi J, Krajmalnik-Brown R, Major CL, Barcelona MJ, Petrovskis E, Hickey R, ... Tiedje JM, et al. Bioreactive barriers: A comparison of bioaugmentation and biostimulation for chlorinated solvent remediation Environmental Science and Technology. 37: 1422-1431. DOI: 10.1021/Es025985U |
0.702 |
|
| 2003 |
Zhou J, Xia B, Huang H, Treves DS, Hauser LJ, Mural RJ, Palumbo AV, Tiedje JM. Bacterial phylogenetic diversity and a novel candidate division of two humid region, sandy surface soils Soil Biology and Biochemistry. 35: 915-924. DOI: 10.1016/S0038-0717(03)00124-X |
0.548 |
|
| 2003 |
Dollhopf SL, Pariseau ML, Hashsham SA, Tiedje JM. Competitive and Cooperative Interactions Affecting a Fermentative Spirochete in Anaerobic Chemostats Microbial Ecology. 46: 1-11. DOI: 10.1007/Pl00021035 |
0.773 |
|
| 2002 |
Sun B, Griffin BM, Ayala-del-Río HL, Hashsham SA, Tiedje JM. Microbial dehalorespiration with 1,1,1-trichloroethane. Science (New York, N.Y.). 298: 1023-5. PMID 12411705 DOI: 10.1126/Science.1074675 |
0.788 |
|
| 2002 |
He J, Sung Y, Dollhopf ME, Fathepure BZ, Tiedje JM, Löffler FE. Acetate versus hydrogen as direct electron donors to stimulate the microbial reductive dechlorination process at chloroethene-contaminated sites. Environmental Science & Technology. 36: 3945-52. PMID 12269747 DOI: 10.1021/Es025528D |
0.735 |
|
| 2002 |
Rodrigues JL, Aiello MR, Urbance JW, Tsoi TV, Tiedje JM. Use of both 16S rRNA and engineered functional genes with real-time PCR to quantify an engineered, PCB-degrading Rhodococcus in soil. Journal of Microbiological Methods. 51: 181-9. PMID 12133610 DOI: 10.1016/S0167-7012(02)00067-2 |
0.597 |
|
| 2002 |
Itoh K, Kanda R, Sumita Y, Kim H, Kamagata Y, Suyama K, Yamamoto H, Hausinger RP, Tiedje JM. tfdA-like genes in 2,4-dichlorophenoxyacetic acid-degrading bacteria belonging to the Bradyrhizobium-Agromonas-Nitrobacter-Afipia cluster in alpha-Proteobacteria. Applied and Environmental Microbiology. 68: 3449-54. PMID 12089027 DOI: 10.1128/Aem.68.7.3449-3454.2002 |
0.328 |
|
| 2002 |
Priemé A, Braker G, Tiedje JM. Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Applied and Environmental Microbiology. 68: 1893-900. PMID 11916709 DOI: 10.1128/Aem.68.4.1893-1900.2002 |
0.415 |
|
| 2002 |
Beliaev AS, Thompson DK, Khare T, Lim H, Brandt CC, Li G, Murray AE, Heidelberg JF, Giometti CS, Yates J, Nealson KH, Tiedje JM, Zhoui J. Gene and protein expression profiles of Shewanella oneidensis during anaerobic growth with different electron acceptors. Omics : a Journal of Integrative Biology. 6: 39-60. PMID 11881834 DOI: 10.1089/15362310252780834 |
0.338 |
|
| 2002 |
Dedysh SN, Khmelenina VN, Suzina NE, Trotsenko YA, Semrau JD, Liesack W, Tiedje JM. Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. International Journal of Systematic and Evolutionary Microbiology. 52: 251-61. PMID 11837310 DOI: 10.1099/00207713-52-1-251 |
0.33 |
|
| 2002 |
Sanford RA, Cole JR, Tiedje JM. Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium. Applied and Environmental Microbiology. 68: 893-900. PMID 11823233 DOI: 10.1128/Aem.68.2.893-900.2002 |
0.591 |
|
| 2002 |
Thompson DK, Beliaev AS, Giometti CS, Tollaksen SL, Khare T, Lies DP, Nealson KH, Lim H, Yates J, Brandt CC, Tiedje JM, Zhou J. Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress. Applied and Environmental Microbiology. 68: 881-92. PMID 11823232 DOI: 10.1128/Aem.68.2.881-892.2002 |
0.49 |
|
| 2002 |
Zhou J, Xia B, Treves DS, Wu LY, Marsh TL, O'Neill RV, Palumbo AV, Tiedje JM. Spatial and resource factors influencing high microbial diversity in soil. Applied and Environmental Microbiology. 68: 326-34. PMID 11772642 DOI: 10.1128/Aem.68.1.326-334.2002 |
0.549 |
|
| 2002 |
Kitagawa W, Takami S, Miyauchi K, Masai E, Kamagata Y, Tiedje JM, Fukuda M. Novel 2,4-dichlorophenoxyacetic acid degradation genes from oligotrophic Bradyrhizobium sp. strain HW13 isolated from a pristine environment. Journal of Bacteriology. 184: 509-18. PMID 11751829 DOI: 10.1128/Jb.184.2.509-518.2002 |
0.336 |
|
| 2001 |
Dollhopf SL, Hashsham SA, Tiedje JM. Interpreting 16S rDNA T-RFLP Data: Application of Self-Organizing Maps and Principal Component Analysis to Describe Community Dynamics and Convergence. Microbial Ecology. 42: 495-505. PMID 12024232 DOI: 10.1007/S00248-001-0027-7 |
0.801 |
|
| 2001 |
Wu L, Thompson DK, Li G, Hurt RA, Tiedje JM, Zhou J. Development and evaluation of functional gene arrays for detection of selected genes in the environment. Applied and Environmental Microbiology. 67: 5780-90. PMID 11722935 DOI: 10.1128/Aem.67.12.5780-5790.2001 |
0.552 |
|
| 2001 |
Hurt RA, Qiu X, Wu L, Roh Y, Palumbo AV, Tiedje JM, Zhou J. Simultaneous recovery of RNA and DNA from soils and sediments. Applied and Environmental Microbiology. 67: 4495-503. PMID 11571148 DOI: 10.1128/Aem.67.10.4495-4503.2001 |
0.743 |
|
| 2001 |
Dollhopf SL, Hashsham SA, Dazzo FB, Hickey RF, Criddle CS, Tiedje JM. The impact of fermentative organisms on carbon flow in methanogenic systems under constant low-substrate conditions. Applied Microbiology and Biotechnology. 56: 531-8. PMID 11549033 DOI: 10.1007/s002530100612 |
0.796 |
|
| 2001 |
Murray AE, Lies D, Li G, Nealson K, Zhou J, Tiedje JM. DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes. Proceedings of the National Academy of Sciences of the United States of America. 98: 9853-8. PMID 11493693 DOI: 10.1073/Pnas.171178898 |
0.532 |
|
| 2001 |
Cho JC, Tiedje JM. Bacterial Species Determination from DNA-DNA Hybridization by Using Genome Fragments and DNA Microarrays Applied and Environmental Microbiology. 67: 3677-3682. PMID 11472947 DOI: 10.1128/Aem.67.8.3677-3682.2001 |
0.305 |
|
| 2001 |
Rodrigues JL, Maltseva OV, Tsoi TV, Helton RR, Quensen JF, Fukuda M, Tiedje JM. Development of a Rhodococcus recombinant strain for degradation of products from anaerobic dechlorination of PCBs. Environmental Science & Technology. 35: 663-8. PMID 11349275 DOI: 10.1021/Es001308T |
0.583 |
|
| 2001 |
Sun B, Cole JR, Tiedje JM. Desulfomonile limimaris sp. nov., an anaerobic dehalogenating bacterium from marine sediments. International Journal of Systematic and Evolutionary Microbiology. 51: 365-71. PMID 11321081 DOI: 10.1099/00207713-51-2-365 |
0.31 |
|
| 2001 |
Braker G, Ayala-del-Río HL, Devol AH, Fesefeldt A, Tiedje JM. Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes. Applied and Environmental Microbiology. 67: 1893-901. PMID 11282647 DOI: 10.1128/Aem.67.4.1893-1901.2001 |
0.803 |
|
| 2001 |
Qiu X, Wu L, Huang H, McDonel PE, Palumbo AV, Tiedje JM, Zhou J. Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning. Applied and Environmental Microbiology. 67: 880-7. PMID 11157258 DOI: 10.1128/Aem.67.2.880-887.2001 |
0.744 |
|
| 2001 |
Grüntzig V, Nold SC, Zhou J, Tiedje JM. Pseudomonas stutzeri nitrite reductase gene abundance in environmental samples measured by real-time PCR. Applied and Environmental Microbiology. 67: 760-8. PMID 11157241 DOI: 10.1128/Aem.67.2.760-768.2001 |
0.785 |
|
| 2000 |
Cho JC, Tiedje JM. Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil Applied and Environmental Microbiology. 66: 5448-5456. PMID 11097926 DOI: 10.1128/Aem.66.12.5448-5456.2000 |
0.348 |
|
| 2000 |
Nold SC, Zhou J, Devol AH, Tiedje JM. Pacific Northwest marine sediments contain ammonia-oxidizing bacteria in the β subdivision of the Proteobacteria Applied and Environmental Microbiology. 66: 4532-4535. PMID 11010911 DOI: 10.1128/Aem.66.10.4532-4535.2000 |
0.476 |
|
| 2000 |
Fernandez AS, Hashsham SA, Dollhopf SL, Raskin L, Glagoleva O, Dazzo FB, Hickey RF, Criddle CS, Tiedje JM. Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose. Applied and Environmental Microbiology. 66: 4058-67. PMID 10966429 DOI: 10.1128/Aem.66.9.4058-4067.2000 |
0.799 |
|
| 2000 |
Hashsham SA, Fernandez AS, Dollhopf SL, Dazzo FB, Hickey RF, Tiedje JM, Criddle CS. Parallel processing of substrate correlates with greater functional stability in methanogenic bioreactor communities perturbed by glucose. Applied and Environmental Microbiology. 66: 4050-7. PMID 10966428 DOI: 10.1128/Aem.66.9.4050-4057.2000 |
0.786 |
|
| 2000 |
Marsh TL, Saxman P, Cole J, Tiedje J. Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis Applied and Environmental Microbiology. 66: 3616-3620. PMID 10919828 DOI: 10.1128/Aem.66.8.3616-3620.2000 |
0.345 |
|
| 2000 |
Vishnivetskaya T, Kathariou S, McGrath J, Gilichinsky D, Tiedje JM. Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments Extremophiles. 4: 165-173. PMID 10879561 DOI: 10.1007/S007920070031 |
0.359 |
|
| 2000 |
Maltseva OV, Tsoi TV, Quensen JF, Fukuda M, Tiedje JM. Degradation of anaerobic reductive dechlorination products of Aroclor 1242 by four aerobic bacteria. Biodegradation. 10: 363-71. PMID 10870552 DOI: 10.1023/A:1008319306757 |
0.312 |
|
| 2000 |
Dedysh SN, Liesack W, Khmelenina VN, Suzina NE, Trotsenko YA, Semrau JD, Bares AM, Panikov NS, Tiedje JM. Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine- pathway methanotrophs International Journal of Systematic and Evolutionary Microbiology. 50: 955-969. PMID 10843033 DOI: 10.1099/00207713-50-3-955 |
0.339 |
|
| 2000 |
Sun B, Cole JR, Sanford RA, Tiedje JM. Isolation and characterization of Desulfovibrio dechloracetivorans sp. nov., a marine dechlorinating bacterium growing by coupling the oxidation of acetate to the reductive dechlorination of 2-chlorophenol. Applied and Environmental Microbiology. 66: 2408-13. PMID 10831418 DOI: 10.1128/Aem.66.6.2408-2413.2000 |
0.587 |
|
| 2000 |
De Wever H, Cole JR, Fettig MR, Hogan DA, Tiedje JM. Reductive dehalogenation of trichloroacetic acid by Trichlorobacter thiogenes gen. nov., sp. nov. Applied and Environmental Microbiology. 66: 2297-301. PMID 10831402 DOI: 10.1128/Aem.66.6.2297-2301.2000 |
0.343 |
|
| 2000 |
Braker G, Zhou J, Wu L, Devol AH, Tiedje JM. Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities Applied and Environmental Microbiology. 66: 2096-2104. PMID 10788387 DOI: 10.1128/Aem.66.5.2096-2104.2000 |
0.528 |
|
| 2000 |
Löffler FE, Sun Q, Li J, Tiedje JM. 16S rRNA gene-based detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species. Applied and Environmental Microbiology. 66: 1369-74. PMID 10742213 DOI: 10.1128/Aem.66.4.1369-1374.2000 |
0.603 |
|
| 2000 |
HOOPER DU, BIGNELL DE, BROWN VK, BRUSSARD L, MARK DANGERFIELD J, WALL DH, WARDLE DA, COLEMAN DC, GILLER KE, LAVELLE P, VAN DER PUTTEN WH, DE RUITER PC, RUSEK J, SILVER WL, TIEDJE JM, et al. Interactions between Aboveground and Belowground Biodiversity in Terrestrial Ecosystems: Patterns, Mechanisms, and Feedbacks Bioscience. 50: 1049. DOI: 10.1641/0006-3568(2000)050[1049:Ibaabb]2.0.Co;2 |
0.309 |
|
| 2000 |
Flynn SJ, Löffler FE, Tiedje JM. Microbial Community Changes Associated with a Shift from Reductive Dechlorination of PCE to Reductive Dechlorination ofcis-DCE and VC Environmental Science & Technology. 34: 1056-1061. DOI: 10.1021/Es9908164 |
0.575 |
|
| 1999 |
Löffler FE, Tiedje JM, Sanford RA. Fraction of electrons consumed in electron acceptor reduction and hydrogen thresholds as indicators of halorespiratory physiology. Applied and Environmental Microbiology. 65: 4049-56. PMID 10473415 DOI: 10.1128/Aem.65.9.4049-4056.1999 |
0.656 |
|
| 1999 |
Song B, Häggblom MM, Zhou J, Tiedje JM, Palleroni NJ. Taxonomic characterization of denitrifying bacteria that degrade aromatic compounds and description of Azoarcus toluvorans sp. nov. and Azoarcus toluclasticus sp. nov. International Journal of Systematic Bacteriology. 49: 1129-40. PMID 10425771 DOI: 10.1099/00207713-49-3-1129 |
0.466 |
|
| 1999 |
Tsoi TV, Plotnikova EG, Cole JR, Guerin WF, Bagdasarian M, Tiedje JM. Cloning, expression, and nucleotide sequence of the Pseudomonas aeruginosa 142 ohb genes coding for oxygenolytic ortho dehalogenation of halobenzoates. Applied and Environmental Microbiology. 65: 2151-62. PMID 10224014 DOI: 10.1128/Aem.65.5.2151-2162.1999 |
0.368 |
|
| 1999 |
Löffler FE, Tiedje JM, Sanford RA. Fraction of Electrons Consumed in Electron Acceptor Reduction and Hydrogen Thresholds as Indicators of Halorespiratory Physiology Applied and Environmental Microbiology. 65: 4049-4056. DOI: 10.1128/aem.65.9.4049-4056.1999 |
0.477 |
|
| 1999 |
Fernández A, Huang S, Seston S, Xing J, Hickey R, Criddle C, Tiedje J. How Stable Is Stable? Function versus Community Composition Applied and Environmental Microbiology. 65: 3697-3704. DOI: 10.1128/Aem.65.8.3697-3704.1999 |
0.394 |
|
| 1999 |
Nüsslein K, Tiedje JM. Soil Bacterial Community Shift Correlated with Change from Forest to Pasture Vegetation in a Tropical Soil Applied and Environmental Microbiology. 65: 3622-3626. DOI: 10.1128/Aem.65.8.3622-3626.1999 |
0.387 |
|
| 1999 |
Hrywna Y, Tsoi TV, Maltseva OV, Quensen JF, Tiedje JM. Construction and Characterization of Two Recombinant Bacteria That Grow on ortho- and para-Substituted Chlorobiphenyls Applied and Environmental Microbiology. 65: 2163-2169. DOI: 10.1128/Aem.65.5.2163-2169.1999 |
0.354 |
|
| 1999 |
Tiedje JM, Asuming-Brempong S, Nüsslein K, Marsh TL, Flynn SJ. Opening the black box of soil microbial diversity Applied Soil Ecology. 13: 109-122. DOI: 10.1016/S0929-1393(99)00026-8 |
0.409 |
|
| 1998 |
Dedysh SN, Panikov NS, Liesack W, Grosskopf R, Zhou J, Tiedje JM. Isolation of acidophilic methane-oxidizing bacteria from northern peat wetlands. Science (New York, N.Y.). 282: 281-4. PMID 9765151 DOI: 10.1126/Science.282.5387.281 |
0.485 |
|
| 1998 |
McGowan C, Fulthorpe R, Wright A, Tiedje JM. Evidence for interspecies gene transfer in the evolution of 2,4-dichlorophenoxyacetic acid degraders. Applied and Environmental Microbiology. 64: 4089-92. PMID 9758850 DOI: 10.1128/Aem.64.10.4089-4092.1998 |
0.346 |
|
| 1998 |
Fulthorpe RR, Rhodes AN, Tiedje JM. High levels of endemicity of 3-chlorobenzoate-degrading soil bacteria Applied and Environmental Microbiology. 64: 1620-1627. PMID 9572926 DOI: 10.1128/Aem.64.5.1620-1627.1998 |
0.369 |
|
| 1998 |
Bogdanova ES, Bass IA, Minakhin LS, Petrova MA, Mindlin SZ, Volodin AA, Kalyaeva ES, Tiedje JM, Hobman JL, Brown NL, Nikiforov VG. Horizontal spread of mer operons among gram-positive bacteria in natural environments. Microbiology (Reading, England). 144: 609-20. PMID 9534232 DOI: 10.1099/00221287-144-3-609 |
0.324 |
|
| 1998 |
Rhodes AN, Urbance JW, Youga H, Corlew-Newman H, Reddy CA, Klug MJ, Tiedje JM, Fisher DC. Identification of bacterial isolates obtained from intestinal contents associated with 12,000-year-old mastodon remains. Applied and Environmental Microbiology. 64: 651-8. PMID 9464403 DOI: 10.1128/Aem.64.2.651-658.1998 |
0.325 |
|
| 1998 |
Zhou J, Davey ME, Figueras JB, Rivkina E, Gilichinsky D, Tiedje JM. Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiology (Reading, England). 3913-9. PMID 9421915 DOI: 10.1099/00221287-143-12-3913 |
0.566 |
|
| 1998 |
Ka JO, Urbance J, Ye RW, Ahn TY, Tiedje JM. Diversity of oxygen and N-oxide regulation of nitrite reductases in denitrifying bacteria. Fems Microbiology Letters. 156: 55-60. PMID 9368361 DOI: 10.1111/J.1574-6968.1997.Tb12705.X |
0.343 |
|
| 1998 |
Nüsslein K, Tiedje JM. Characterization of the Dominant and Rare Members of a Young Hawaiian Soil Bacterial Community with Small-Subunit Ribosomal DNA Amplified from DNA Fractionated on the Basis of Its Guanine and Cytosine Composition Applied and Environmental Microbiology. 64: 1283-1289. DOI: 10.1128/Aem.64.4.1283-1289.1998 |
0.393 |
|
| 1998 |
Dedysh SN, Panikov NS, Tiedje JM. Acidophilic Methanotrophic Communities fromSphagnum Peat Bogs Applied and Environmental Microbiology. 64: 922-929. DOI: 10.1128/Aem.64.3.922-929.1998 |
0.365 |
|
| 1998 |
Prinčič A, Mahne I, Megušar F, Paul EA, Tiedje JM. Effects of pH and Oxygen and Ammonium Concentrations on the Community Structure of Nitrifying Bacteria from Wastewater Applied and Environmental Microbiology. 64: 3584-3590. DOI: 10.1128/Aem.64.10.3584-3590.1998 |
0.372 |
|
| 1998 |
Rivkina E, Gilichinsky D, Wagener S, Tiedje J, McGrath J. Biogeochemical activity of anaerobic microorganisms from buried permafrost sediments Geomicrobiology Journal. 15: 187-193. DOI: 10.1080/01490459809378075 |
0.348 |
|
| 1998 |
Santo Domingo JW, Kaufman MG, Klug MJ, Holben WE, Harris D, Tiedje JM. Influence of diet on the structure and function of the bacterial hindgut community of crickets Molecular Ecology. 7: 761-767. DOI: 10.1046/J.1365-294X.1998.00390.X |
0.335 |
|
| 1998 |
Moyer CL, Tiedje JM, Dobbs FC, Karl DM. Diversity of deep-sea hydrothermal vent archaea from Loihi Seamount, Hawaii Deep-Sea Research Part Ii: Topical Studies in Oceanography. 45: 303-317. DOI: 10.1016/S0967-0645(97)00081-7 |
0.386 |
|
| 1997 |
Loffler FE, Ritalahti KM, Tiedje JM. Dechlorination of chloroethenes is inhibited by 2-bromoethanesulfonate in the absence of methanogens. Applied and Environmental Microbiology. 63: 4982-5. PMID 16535759 DOI: 10.1128/Aem.63.12.4982-4985.1997 |
0.551 |
|
| 1997 |
Fries MR, Forney LJ, Tiedje JM. Phenol- and toluene-degrading microbial populations from an aquifer in which successful trichloroethene cometabolism occurred. Applied and Environmental Microbiology. 63: 1523-30. PMID 16535577 DOI: 10.1128/Aem.63.4.1523-1530.1997 |
0.32 |
|
| 1997 |
Fries MR, Hopkins GD, McCarty PL, Forney LJ, Tiedje JM. Microbial Succession during a Field Evaluation of Phenol and Toluene as the Primary Substrates for Trichloroethene Cometabolism. Applied and Environmental Microbiology. 63: 1515-22. PMID 16535576 DOI: 10.1128/Aem.63.4.1515-1522.1997 |
0.381 |
|
| 1997 |
Matheson VG, Munakata-Marr J, Hopkins GD, McCarty PL, Tiedje JM, Forney LJ. A novel means to develop strain-specific DNA probes for detecting bacteria in the environment. Applied and Environmental Microbiology. 63: 2863-9. PMID 9212434 DOI: 10.1128/Aem.63.7.2863-2869.1997 |
0.345 |
|
| 1997 |
Kamagata Y, Fulthorpe RR, Tamura K, Takami H, Forney LJ, Tiedje JM. Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria. Applied and Environmental Microbiology. 63: 2266-72. PMID 9172346 DOI: 10.1128/Aem.63.6.2266-2272.1997 |
0.389 |
|
| 1997 |
Loffler FE, Champine JE, Ritalahti KM, Sprague SJ, Tiedje JM. Complete reductive dechlorination of 1,2-dichloropropane by anaerobic bacteria. Applied and Environmental Microbiology. 63: 2870-2875. DOI: 10.1128/Aem.63.7.2870-2875.1997 |
0.545 |
|
| 1997 |
Zhou J, Palumbo AV, Tiedje JM. Sensitive detection of a novel class of toluene-degrading denitrifiers, Azoarcus tolulyticus, with small-subunit rRNA primers and probes. Applied and Environmental Microbiology. 63: 2384-2390. DOI: 10.1128/Aem.63.6.2384-2390.1997 |
0.519 |
|
| 1997 |
Massol-Deyá A, Weller R, Ríos-Hernández L, Zhou JZ, Hickey RF, Tiedje JM. Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater. Applied and Environmental Microbiology. 63: 270-276. DOI: 10.1128/Aem.63.1.270-276.1997 |
0.365 |
|
| 1997 |
Larsen N, Overbeek R, Pramanik S, Schmidt TM, Selkov EE, Strunk O, Tiedje JM, Urbance JW. Towards microbial data integration Journal of Industrial Microbiology and Biotechnology. 18: 68-72. DOI: 10.1038/Sj.Jim.2900366 |
0.329 |
|
| 1997 |
Sanford RA, Tiedje JM. Chlorophenol dechlorination and subsequent degradation in denitrifying microcosms fed low concentrations of nitrate Biodegradation. 7: 425-434. DOI: 10.1007/Bf00056426 |
0.621 |
|
| 1996 |
Chee-Sanford JC, Frost JW, Fries MR, Zhou J, Tiedje JM. Evidence for acetyl coenzyme A and cinnamoyl coenzyme A in the anaerobic toluene mineralization pathway in Azoarcus tolulyticus Tol-4. Applied and Environmental Microbiology. 62: 964-73. PMID 8975623 DOI: 10.1128/Aem.62.3.964-973.1996 |
0.458 |
|
| 1996 |
Fulthorpe RR, Rhodes AN, Tiedje JM. Pristine soils mineralize 3-chlorobenzoate and 2,4-dichlorophenoxyacetate via different microbial populations Applied and Environmental Microbiology. 62: 1159-1166. PMID 8919776 DOI: 10.1128/Aem.62.4.1159-1166.1996 |
0.381 |
|
| 1996 |
Sanford RA, Cole JR, Löffler FE, Tiedje JM. Characterization of Desulfitobacterium chlororespirans sp. nov., which grows by coupling the oxidation of lactate to the reductive dechlorination of 3-chloro-4-hydroxybenzoate. Applied and Environmental Microbiology. 62: 3800-8. PMID 8837437 DOI: 10.1128/Aem.62.10.3800-3808.1996 |
0.703 |
|
| 1996 |
Moyer CL, Tiedje JM, Dobbs FC, Karl DM. A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: Efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature Applied and Environmental Microbiology. 62: 2501-2507. PMID 8779589 DOI: 10.1128/Aem.62.7.2501-2507.1996 |
0.356 |
|
| 1996 |
Zhou J, Bruns MA, Tiedje JM. DNA recovery from soils of diverse composition. Applied and Environmental Microbiology. 62: 316-22. PMID 8593035 DOI: 10.1128/Aem.62.2.316-322.1996 |
0.501 |
|
| 1996 |
Zhou J, Fries MR, Chee-Sanford JC, Tiedje JM. Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov. International Journal of Systematic Bacteriology. 45: 500-6. PMID 8590677 DOI: 10.1099/00207713-45-3-500 |
0.473 |
|
| 1996 |
Shih C, Davey ME, Zhou J, Tiedje JM, Criddle CS. Effects of phenol feeding pattern on microbial community structure and cometabolism of trichloroethylene. Applied and Environmental Microbiology. 62: 2953-2960. DOI: 10.1128/Aem.62.8.2953-2960.1996 |
0.467 |
|
| 1996 |
Pellizari VH, Bezborodnikov S, Quensen JF, Tiedje JM. Evaluation of strains isolated by growth on naphthalene and biphenyl for hybridization of genes to dioxygenase probes and polychlorinated biphenyl-degrading ability. Applied and Environmental Microbiology. 62: 2053-2058. DOI: 10.1128/Aem.62.6.2053-2058.1996 |
0.348 |
|
| 1996 |
Loffler FE, Sanford RA, Tiedje JM. Initial Characterization of a Reductive Dehalogenase from Desulfitobacterium chlororespirans Co23. Applied and Environmental Microbiology. 62: 3809-3813. DOI: 10.1128/Aem.62.10.3809-3813.1996 |
0.672 |
|
| 1996 |
Sanford RA, Cole JR, Löffler FE, Tiedje JM. Characterization of Desulfitobacterium chlororespirans sp. nov., which grows by coupling the oxidation of lactate to the reductive dechlorination of 3-chloro-4-hydroxybenzoate. Applied and Environmental Microbiology. 62: 3800-3808. DOI: 10.1128/aem.62.10.3800-3808.1996 |
0.48 |
|
| 1995 |
Ye D, Quensen JI, Tiedje JM, Boyd SA. Evidence for para dechlorination of polychlorobiphenyls by methanogenic bacteria. Applied and Environmental Microbiology. 61: 2166-71. PMID 16535042 DOI: 10.1128/Aem.61.6.2166-2171.1995 |
0.316 |
|
| 1995 |
Ye RW, Haas D, Ka JO, Krishnapillai V, Zimmermann A, Baird C, Tiedje JM. Anaerobic activation of the entire denitrification pathway in Pseudomonas aeruginosa requires Anr, an analog of Fnr. Journal of Bacteriology. 177: 3606-9. PMID 7768875 DOI: 10.1128/Jb.177.12.3606-3609.1995 |
0.349 |
|
| 1995 |
Zhou JZ, Tiedje JM. Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium. Molecular Ecology. 4: 613-8. PMID 7582169 DOI: 10.1111/J.1365-294X.1995.Tb00261.X |
0.356 |
|
| 1995 |
Fulthorpe RR, McGowan C, Maltseva OV, Holben WE, Tiedje JM. 2,4-Dichlorophenoxyacetic acid-degrading bacteria contain mosaics of catabolic genes. Applied and Environmental Microbiology. 61: 3274-81. PMID 7574638 DOI: 10.1128/Aem.61.9.3274-3281.1995 |
0.366 |
|
| 1994 |
Ka JO, Tiedje JM. Integration and excision of a 2,4-dichlorophenoxyacetic acid-degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergeneric transfer. Journal of Bacteriology. 176: 5284-9. PMID 8071203 DOI: 10.1128/Jb.176.17.5284-5289.1994 |
0.334 |
|
| 1994 |
Ka JO, Holben WE, Tiedje JM. Analysis of competition in soil among 2,4-dichlorophenoxyacetic acid-degrading bacteria. Applied and Environmental Microbiology. 60: 1121-8. PMID 8017909 DOI: 10.1128/Aem.60.4.1121-1128.1994 |
0.376 |
|
| 1994 |
Ka JO, Holben WE, Tiedje JM. Use of gene probes to aid in recovery and identification of functionally dominant 2,4-dichlorophenoxyacetic acid-degrading populations in soil. Applied and Environmental Microbiology. 60: 1116-20. PMID 8017908 DOI: 10.1128/Aem.60.4.1116-1120.1994 |
0.394 |
|
| 1994 |
Ka JO, Holben WE, Tiedje JM. Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils. Applied and Environmental Microbiology. 60: 1106-15. PMID 8017907 DOI: 10.1128/Aem.60.4.1106-1115.1994 |
0.344 |
|
| 1994 |
Thiem SM, Krumme ML, Smith RL, Tiedje JM. Use of molecular techniques to evaluate the survival of a microorganism injected into an aquifer Applied and Environmental Microbiology. 60: 1059-1067. PMID 7912498 DOI: 10.1128/Aem.60.4.1059-1067.1994 |
0.322 |
|
| 1994 |
Cole JR, Cascarelli AL, Mohn WW, Tiedje JM. Isolation and characterization of a novel bacterium growing via reductive dehalogenation of 2-chlorophenol. Applied and Environmental Microbiology. 60: 3536-42. PMID 7527200 DOI: 10.1128/Aem.60.10.3536-3542.1994 |
0.338 |
|
| 1994 |
Højberg O, Revsbech NP, Tiedje JM. Denitrification in Soil Aggregates Analyzed with Microsensors for Nitrous Oxide and Oxygen Soil Science Society of America Journal. 58: 1691. DOI: 10.2136/Sssaj1994.03615995005800060016X |
0.305 |
|
| 1994 |
Fries MR, Zhou J, Chee-Sanford J, Tiedje JM. Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats. Applied and Environmental Microbiology. 60: 2802-2810. DOI: 10.1128/Aem.60.8.2802-2810.1994 |
0.548 |
|
| 1994 |
Krumme ML, Smith RL, Egestorff J, Thiem SM, Tiedje JM, Timmis KN, Dwyer DF. Behavior of pollutant-degrading microorganisms in aquifers: Predictions for genetically engineered organisms Environmental Science and Technology. 28: 1134-1138. DOI: 10.1021/Es00055A025 |
0.651 |
|
| 1993 |
Ye RW, Fries MR, Bezborodnikov SG, Averill BA, Tiedje JM. Characterization of the structural gene encoding a copper-containing nitrite reductase and homology of this gene to DNA of other denitrifiers. Applied and Environmental Microbiology. 59: 250-4. PMID 8439151 DOI: 10.1128/Aem.59.1.250-254.1993 |
0.344 |
|
| 1993 |
Tiedje JM, Quensen JF, Chee-Sanford J, Schimel JP, Boyd SA. Microbial reductive dechlorination of PCBs. Biodegradation. 4: 231-40. PMID 7764920 DOI: 10.1007/Bf00695971 |
0.613 |
|
| 1993 |
Groffman PM, Rice CW, Tiedje JM. Denitrification in a Tallgrass Prairie Landscape Ecology. 74: 855-862. DOI: 10.2307/1940811 |
0.331 |
|
| 1993 |
Groffmann PM, Zak DR, Christensen S, Mosier A, Tiedje JM. Early Spring Nitrogen Dynamics in a Temperate Forest Landscape Ecology. 74: 1579-1585. DOI: 10.2307/1940085 |
0.353 |
|
| 1993 |
Jørgensen KS, Tiedje JM. Survival of Denitrifiers in Nitrate-Free, Anaerobic Environments Applied and Environmental Microbiology. 59: 3297-3305. DOI: 10.1128/Aem.59.10.3297-3305.1993 |
0.328 |
|
| 1992 |
Holben WE, Schroeter BM, Calabrese VG, Olsen RH, Kukor JK, Biederbeck VO, Smith AE, Tiedje JM. Gene probe analysis of soil microbial populations selected by amendment with 2,4-dichlorophenoxyacetic acid. Applied and Environmental Microbiology. 58: 3941-8. PMID 1476437 DOI: 10.1128/Aem.58.12.3941-3948.1992 |
0.361 |
|
| 1992 |
Morris PJ, Quensen JF, Tiedje JM, Boyd SA. Reductive debromination of the commercial polybrominated biphenyl mixture firemaster BP6 by anaerobic microorganisms from sediments. Applied and Environmental Microbiology. 58: 3249-56. PMID 1332608 DOI: 10.1128/Aem.58.10.3249-3256.1992 |
0.339 |
|
| 1992 |
Mohn WW, Tiedje JM. Microbial reductive dehalogenation. Microbiological Reviews. 56: 482-507. DOI: 10.1128/Mmbr.56.3.482-507.1992 |
0.305 |
|
| 1992 |
Smith GB, Tiedje JM. Isolation and characterization of a nitrite reductase gene and its use as a probe for denitrifying bacteria. Applied and Environmental Microbiology. 58: 376-384. DOI: 10.1128/Aem.58.1.376-384.1992 |
0.384 |
|
| 1992 |
Groffman PM, Tiedje JM, Mokma DL, Simkins S. Regional scale analysis of denitrification in north temperate forest soils Landscape Ecology. 7: 45-53. DOI: 10.1007/Bf02573956 |
0.339 |
|
| 1991 |
Groffman PM, Tiedje JM. Relationships between denitrification, CO2 production and air-filled porosity in soils of different texture and drainage Soil Biology and Biochemistry. 23: 299-302. DOI: 10.1016/0038-0717(91)90067-T |
0.315 |
|
| 1990 |
Christensen S, Simkins S, Tiedje JM. Temporal Patterns of Soil Denitrification: Their Stability and Causes Soil Science Society of America Journal. 54: 1614-1618. DOI: 10.2136/Sssaj1990.03615995005400060017X |
0.304 |
|
| 1990 |
Christensen S, Simkins S, Tiedje JM. Spatial Variation in Denitrification: Dependency of Activity Centers on the Soil Environment Soil Science Society of America Journal. 54: 1608-1613. DOI: 10.2136/Sssaj1990.03615995005400060016X |
0.316 |
|
| 1990 |
CHRISTENSEN S, TIEDJE JM. Brief and vigorous N2O production by soil at spring thaw Journal of Soil Science. 41: 1-4. DOI: 10.1111/J.1365-2389.1990.Tb00039.X |
0.351 |
|
| 1989 |
Jansson JK, Holben WE, Tiedje JM. Detection in soil of a deletion in an engineered DNA sequence by using DNA probes. Applied and Environmental Microbiology. 55: 3022-5. PMID 2624468 DOI: 10.1128/Aem.55.11.3022-3025.1989 |
0.597 |
|
| 1989 |
Coyne MS, Arunakumari A, Averill BA, Tiedje JM. Immunological identification and distribution of dissimilatory heme cd1 and nonheme copper nitrite reductases in denitrifying bacteria. Applied and Environmental Microbiology. 55: 2924-31. PMID 2624465 DOI: 10.1128/Aem.55.11.2924-2931.1989 |
0.322 |
|
| 1989 |
Linkfield TG, Suflita JM, Tiedje JM. Characterization of the acclimation period before anaerobic dehalogenation of halobenzoates Applied and Environmental Microbiology. 55: 2773-2778. PMID 2624458 DOI: 10.1128/Aem.55.11.2773-2778.1989 |
0.303 |
|
| 1989 |
Tiedje JM, Colwell RK, Grossman YL, Hodson RE, Lenski RE, Mack RN, Regal PJ. The Planned Introduction of Genetically Engineered Organisms: Ecological Considerations and Recommendations Ecology. 70: 298-315. DOI: 10.2307/1937535 |
0.548 |
|
| 1989 |
Rice CW, Tiedje JM. Regulation of nitrate assimilation by ammonium in soils and in isolated soil microorganisms Soil Biology and Biochemistry. 21: 597-602. DOI: 10.1016/0038-0717(89)90135-1 |
0.367 |
|
| 1989 |
Groffman PM, Tiedje JM. Denitrification in north temperate forest soils: Relationships between denitrification and environmental factors at the landscape scale Soil Biology and Biochemistry. 21: 621-626. DOI: 10.1016/0038-0717(89)90054-0 |
0.366 |
|
| 1989 |
Groffman PM, Tiedje JM. Denitrification in north temperate forest soils: Spatial and temporal patterns at the landscape and seasonal scales Soil Biology and Biochemistry. 21: 613-620. DOI: 10.1016/0038-0717(89)90053-9 |
0.354 |
|
| 1989 |
Tiedje JM, Simkins S, Groffman PM. Perspectives on measurement of denitrification in the field including recommended protocols for acetylene based methods Plant and Soil. 115: 261-284. DOI: 10.1007/Bf02202594 |
0.322 |
|
| 1988 |
Quensen JF, Tiedje JM, Boyd SA. Reductive dechlorination of polychlorinated biphenyls by anaerobic microorganisms from sediments. Science (New York, N.Y.). 242: 752-4. PMID 17751997 DOI: 10.1126/Science.242.4879.752 |
0.316 |
|
| 1988 |
Dwyer DF, Weeg-Aerssens E, Shelton DR, Tiedje JM. Bioenergetic conditions of butyrate metabolism by a syntrophic, anaerobic bacterium in coculture with hydrogen-oxidizing methanogenic and sulfidogenic bacteria. Applied and Environmental Microbiology. 54: 1354-9. PMID 16347645 DOI: 10.1128/Aem.54.6.1354-1359.1988 |
0.661 |
|
| 1988 |
Holben WE, Jansson JK, Chelm BK, Tiedje JM. DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community. Applied and Environmental Microbiology. 54: 703-711. PMID 16347582 DOI: 10.1128/Aem.54.3.703-711.1988 |
0.602 |
|
| 1988 |
Tiedje JM, Stevens TO. The ecology of an anaerobic dechlorinating consortium. Basic Life Sciences. 45: 3-14. PMID 3052411 DOI: 10.1007/978-1-4899-0824-7_1 |
0.323 |
|
| 1988 |
Robertson GP, Hutson MA, Evans FC, Tiedje JM. Spatial Variability in a Successional Plant Community: Patterns of Nitrogen Availability Ecology. 69: 1517-1524. DOI: 10.2307/1941649 |
0.465 |
|
| 1988 |
Holben WE, Tiedje JM. Applications of Nucleic Acid Hybridization in Microbial Ecology Ecology. 69: 561-568. DOI: 10.2307/1941005 |
0.382 |
|
| 1988 |
Groffman PM, Tiedje JM. Denitrification Hysteresis During Wetting and Drying Cycles in Soil Soil Science Society of America Journal. 52: 1626-1629. DOI: 10.2136/Sssaj1988.03615995005200060022X |
0.326 |
|
| 1988 |
Rice CW, Sierzega PE, Tiedje JM, Jacobs LW. Stimulated Denitrification in the Microenvironment of a Biodegradable Organic Waste Injected into Soil Soil Science Society of America Journal. 52: 102-108. DOI: 10.2136/Sssaj1988.03615995005200010018X |
0.319 |
|
| 1988 |
Dwyer DF, Weeg-Aerssens E, Shelton DR, Tiedje JM. Bioenergetic Conditions of Butyrate Metabolism by a Syntrophic, Anaerobic Bacterium in Coculture with Hydrogen-Oxidizing Methanogenic and Sulfidogenic Bacteria † Applied and Environmental Microbiology. 54: 1354-1359. DOI: 10.1128/aem.54.6.1354-1359.1988 |
0.629 |
|
| 1988 |
Stevens TO, Linkfield TG, Tiedje JM. Physiological characterization of strain DCB-1, a unique dehalogenating sulfidogenic bacterium. Applied and Environmental Microbiology. 54: 2938-2943. DOI: 10.1128/Aem.54.12.2938-2943.1988 |
0.307 |
|
| 1988 |
Robertson GP, Tiedje JM. Deforestation alters denitrification in a lowland tropical rain forest Nature. 336: 756-759. DOI: 10.1038/336756A0 |
0.423 |
|
| 1987 |
Robertson G, tiedje J. Nitrous oxide sources in aerobic soils: Nitrification, denitrification and other biological processes Soil Biology and Biochemistry. 19: 187-193. DOI: 10.1016/0038-0717(87)90080-0 |
0.457 |
|
| 1987 |
Robertson GP, Vitousek PM, Matson PA, Tiedje JM. Denitrification in a clearcut Loblolly pine (Pinus taeda L.) plantation in the southeastern US Plant and Soil. 97: 119-129. DOI: 10.1007/Bf02149830 |
0.606 |
|
| 1987 |
Boyd SA, Fathepure BZ, Tiedje JM. Reductive dechlorination of 4-chlororesorcinol by anaerobic microorganisms Environmental Toxicology and Chemistry. 6: 929-934. DOI: 10.1002/Etc.5620061204 |
0.326 |
|
| 1986 |
Dwyer DF, Tiedje JM. Metabolism of polyethylene glycol by two anaerobic bacteria, Desulfovibrio desulfuricans and a Bacteroides sp Applied and Environmental Microbiology. 52: 852-856. PMID 3777930 DOI: 10.1128/Aem.52.4.852-856.1986 |
0.664 |
|
| 1986 |
Dwyer DF, Tiedje JM. Metabolism of polyethylene glycol by two anaerobic bacteria, Desulfovibrio desulfuricans and a Bacteroides sp. Applied and Environmental Microbiology. 52: 852-856. DOI: 10.1128/aem.52.4.852-856.1986 |
0.632 |
|
| 1986 |
Dwyer DF, Krumme ML, Boyd SA, Tiedje JM. Kinetics of Phenol Biodegradation by an Immobilized Methanogenic Consortium † Applied and Environmental Microbiology. 52: 345-351. DOI: 10.1128/Aem.52.2.345-351.1986 |
0.65 |
|
| 1986 |
Myrold DD, Tiedje JM. Simultaneous estimation of several nitrogen cycle rates using 15N: Theory and application Soil Biology and Biochemistry. 18: 559-568. DOI: 10.1016/0038-0717(86)90076-3 |
0.308 |
|
| 1985 |
Myrold DD, Tiedje JM. Diffusional Constraints on Denitrification in Soil Soil Science Society of America Journal. 49: 651-657. DOI: 10.2136/Sssaj1985.03615995004900030025X |
0.329 |
|
| 1985 |
Sexstone AJ, Revsbech NP, Parkin TB, Tiedje JM. Direct Measurement of Oxygen Profiles and Denitrification Rates in Soil Aggregates Soil Science Society of America Journal. 49: 645-651. DOI: 10.2136/Sssaj1985.03615995004900030024X |
0.31 |
|
| 1985 |
Parkin TB, Sexstone AJ, Tiedje JM. Adaptation of Denitrifying Populations to Low Soil pH † Applied and Environmental Microbiology. 49: 1053-1056. DOI: 10.1128/Aem.49.5.1053-1056.1985 |
0.328 |
|
| 1985 |
Myrold DD, Tiedje JM. Establishment of denitrification capacity in soil: Effects of carbon, nitrate and moisture Soil Biology and Biochemistry. 17: 819-822. DOI: 10.1016/0038-0717(85)90140-3 |
0.39 |
|
| 1984 |
Shelton DR, Tiedje JM. Isolation and partial characterization of bacteria in an anaerobic consortium that mineralizes 3-chlorobenzoic Acid. Applied and Environmental Microbiology. 48: 840-8. PMID 16346648 DOI: 10.1128/Aem.48.4.840-848.1984 |
0.322 |
|
| 1984 |
Robertson GP, Tiedje JM. Denitrification and Nitrous Oxide Production in Successional and Old-Growth Michigan Forests Soil Science Society of America Journal. 48: 383-389. DOI: 10.2136/Sssaj1984.03615995004800020032X |
0.404 |
|
| 1984 |
Parkin TB, Tiedje JM. Application of a soil core method to investigate the effect of oxygen concentration on denitrification Soil Biology and Biochemistry. 16: 331-334. DOI: 10.1016/0038-0717(84)90027-0 |
0.316 |
|
| 1984 |
Parkin TB, Kaspar HF, Sexstone AJ, Tiedje JM. A gas-flow soil core method to measure field denitrification rates Soil Biology and Biochemistry. 16: 323-330. DOI: 10.1016/0038-0717(84)90026-9 |
0.348 |
|
| 1984 |
Tiedje JM, Sexstone AJ, Parkin TB, Revsbech NP. Anaerobic processes in soil Plant and Soil. 76: 197-212. DOI: 10.1007/978-94-009-6101-2_18 |
0.384 |
|
| 1983 |
Dwyer DF, Tiedje JM. Degradation of ethylene glycol and polyethylene glycols by methanogenic consortia Applied and Environmental Microbiology. 46: 185-190. PMID 6614903 DOI: 10.1128/Aem.46.1.185-190.1983 |
0.654 |
|
| 1983 |
Dwyer DF, Tiedje JM. Degradation of ethylene glycol and polyethylene glycols by methanogenic consortia. Applied and Environmental Microbiology. 46: 185-190. DOI: 10.1128/aem.46.1.185-190.1983 |
0.609 |
|
| 1982 |
Suflita JM, Horowitz A, Shelton DR, Tiedje JM. Dehalogenation: a novel pathway for the anaerobic biodegradation of haloaromatic compounds. Science (New York, N.Y.). 218: 1115-7. PMID 17752871 DOI: 10.1126/Science.218.4577.1115 |
0.312 |
|
| 1982 |
Bleakley BH, Tiedje JM. Nitrous oxide production by organisms other than nitrifiers or denitrifiers. Applied and Environmental Microbiology. 44: 1342-8. PMID 16346152 DOI: 10.1128/Aem.44.6.1342-1348.1982 |
0.332 |
|
| 1981 |
Betlach MR, Tiedje JM, Firestone RB. Assimilatory nitrate uptake in Pseudomonas fluorescens studied using nitrogen-13. Archives of Microbiology. 129: 135-40. PMID 6786247 DOI: 10.1007/Bf00455349 |
0.302 |
|
| 1980 |
Firestone MK, Firestone RB, Tiedje JM. Nitrous oxide from soil denitrification: factors controlling its biological production. Science (New York, N.Y.). 208: 749-51. PMID 17771133 DOI: 10.1126/Science.208.4445.749 |
0.564 |
|
| 1980 |
Caskey WH, Tiedje JM. The reduction of nitrate to ammonium by a Clostridium sp. isolated from soil. Journal of General Microbiology. 119: 217-23. PMID 6106043 DOI: 10.1099/00221287-119-1-217 |
0.325 |
|
| 1980 |
Smith MS, Tiedje JM. Growth and survival of antibiotic-resistant denitrifier strains in soil Canadian Journal of Microbiology. 26: 854-856. DOI: 10.1139/M80-148 |
0.36 |
|
| 1979 |
Firestone MK, Tiedje JM. Temporal change in nitrous oxide and dinitrogen from denitrification following onset of anaerobiosis. Applied and Environmental Microbiology. 38: 673-9. PMID 16345447 DOI: 10.1128/Aem.38.4.673-679.1979 |
0.522 |
|
| 1979 |
Firestone MK, Firestone RB, Tiedje JM. Nitric oxide as an intermediate in denitrification: evidence from nitrogen-13 isotope exchange. Biochemical and Biophysical Research Communications. 91: 10-6. PMID 518609 DOI: 10.1016/0006-291X(79)90575-8 |
0.52 |
|
| 1979 |
Firestone MK, Smith MS, Firestone RB, Tiedje JM. The Influence of Nitrate, Nitrite, and Oxygen on the Composition of the Gaseous Products of Denitrification in Soil Soil Science Society of America Journal. 43: 1140-1144. DOI: 10.2136/Sssaj1979.03615995004300060016X |
0.567 |
|
| 1979 |
Smith MS, Tiedje JM. The Effect of Roots on Soil Denitrification Soil Science Society of America Journal. 43: 951-955. DOI: 10.2136/Sssaj1979.03615995004300050027X |
0.349 |
|
| 1979 |
Caskey WH, Tiedje JM. Evidence for Clostridia as Agents of Dissimilatory Reduction of Nitrate to Ammonium in Soils Soil Science Society of America Journal. 43: 931-936. DOI: 10.2136/Sssaj1979.03615995004300050023X |
0.379 |
|
| 1979 |
Tiedje JM, Firestone RB, Firestone MK, Betlach MR, Smith MS, Caskey WH. Methods for the Production and Use of Nitrogen-13 In Studies of Denitrification Soil Science Society of America Journal. 43: 709-716. DOI: 10.2136/Sssaj1979.03615995004300040016X |
0.509 |
|
| 1979 |
Smith M, Tiedje JM. Phases of denitrification following oxygen depletion in soil Soil Biology and Biochemistry. 11: 261-267. DOI: 10.1016/0038-0717(79)90071-3 |
0.343 |
|
| 1978 |
Firestone MK, Tiedje JM. Pathway of degradation of nitrilotriacetate by a Pseudomonas species. Applied and Environmental Microbiology. 35: 955-61. PMID 655711 DOI: 10.1128/Aem.35.5.955-961.1978 |
0.579 |
|
| 1978 |
Chou SF, Jacobs LW, Penner D, Tiedje JM. Absence of plant uptake and translocation of polybrominated biphenyls (PBBs). Environmental Health Perspectives. 23: 9-12. PMID 210006 DOI: 10.1289/Ehp.78239 |
0.343 |
|
| 1978 |
Jacobs LW, Chou SF, Tiedje JM. Field concentrations and persistence of polybrominated biphenyls in soils and solubility of PBB in natural waters. Environmental Health Perspectives. 23: 1-8. PMID 209960 DOI: 10.1289/Ehp.78231 |
0.359 |
|
| 1978 |
Firestone MK, Aust SD, Tiedje JM. A nitrilotriacetic acid monooxygenase with conditional NADH-oxidase activity. Archives of Biochemistry and Biophysics. 190: 617-23. PMID 31137 DOI: 10.1016/0003-9861(78)90318-1 |
0.518 |
|
| 1978 |
Smith MS, Firestone MK, Tiedje JM. The Acetylene Inhibition Method for Short-term Measurement of Soil Denitrification and its Evaluation Using Nitrogen-131 Soil Science Society of America Journal. 42: 611. DOI: 10.2136/Sssaj1978.03615995004200040015X |
0.562 |
|
| 1978 |
McGahen LL, Tiedje JM. Metabolism of two new acylanilide herbicides, Antor herbicide (H-22234) and Dual (metolachlor) by the soil fungus Chaetomium globosum Journal of Agricultural and Food Chemistry. 26: 414-419. DOI: 10.1021/Jf60216A007 |
0.318 |
|
| 1977 |
Gamble TN, Betlach MR, Tiedje JM. Numerically Dominant Denitrifying Bacteria from World Soils Applied and Environmental Microbiology. 33: 926-939. PMID 869539 DOI: 10.1128/Aem.33.4.926-939.1977 |
0.388 |
|
| 1977 |
Jacobs LW, Chou SF, Tiedje JM. Fate of polybrominated biphenyls (PBB's) in soils. Persistence and plant uptake. Journal of Agricultural and Food Chemistry. 24: 1198-201. PMID 187634 DOI: 10.1021/Jf60208A005 |
0.31 |
|
| 1976 |
Reyes V, Tiedje J. Metabolism of 14c-labeled plant materials by woodlice (Tracheoniscus rathkei brandt) and soil microorganisms Soil Biology and Biochemistry. 8: 103-108. DOI: 10.1016/0038-0717(76)90073-0 |
0.36 |
|
| 1975 |
Firestone MK, Tiedje JM. Biodegradation of metal-nitrilotriacetate complexes by a Pseudomonas species: mechanism of reaction. Applied Microbiology. 29: 758-64. PMID 1155932 DOI: 10.1128/Aem.29.6.758-764.1975 |
0.522 |
|
| 1975 |
Tiedje JM, Hagedorn MJ. Degradation of alachlor by a soil fungus, Chaetomium globosum. Journal of Agricultural and Food Chemistry. 23: 77-81. PMID 1133282 DOI: 10.1021/Jf60197A029 |
0.34 |
|
| 1975 |
Caldwell DE, Tiedje JM. The structure of anaerobic bacterial communities in the hypolimnia of several Michigan lakes. Canadian Journal of Microbiology. 21: 377-85. PMID 1090351 DOI: 10.1139/M75-052 |
0.337 |
|
| 1975 |
Caldwell DE, Tiedje JM. A morphological study of anaerobic bacteria from the hypolimnia of two Michigan lakes. Canadian Journal of Microbiology. 21: 362-76. PMID 1090350 DOI: 10.1139/M75-051 |
0.336 |
|
| 1975 |
Tiedje JM. Microbial Degradation of Ethylenediaminetetraacetate in Soils and Sediments1 Applied Microbiology. 30: 327-329. DOI: 10.1128/Aem.30.2.327-329.1975 |
0.335 |
|
| 1973 |
Tiedje JM, Mason BB, Warren CB, Malec EJ. Metabolism of Nitrilotriacetate by Cells of Pseudomonas Species1 Applied Microbiology. 25: 811-818. DOI: 10.1128/Aem.25.5.811-818.1973 |
0.327 |
|
| 1973 |
Reyes V, Tiedje J. Metabolism of 14C uniformly labeled organic material by woodlice [Isopoda: Oniscoidea] and soil microorganisms Soil Biology and Biochemistry. 5: 603-611. DOI: 10.1016/0038-0717(73)90050-3 |
0.309 |
|
| 1970 |
Duxbury JM, Tiedje JM, Alexander M, Dawson JE. 2,4-D metabolism: Enzymatic conversion of chloromaleylacetic acid to succinic acid Journal of Agricultural and Food Chemistry. 18: 199-201. PMID 4400316 DOI: 10.1021/Jf60168A029 |
0.404 |
|
| 1969 |
Tiedje JM, Alexander M. Enzymic cleavage of the ether bond of 2,4-dichlorophenoxyacetate. Journal of Agricultural and Food Chemistry. 17: 1080-4. PMID 21428356 DOI: 10.1021/Jf60165A012 |
0.383 |
|
| 1969 |
Tiedje JM, Duxbury JM, Alexander M, Dawson JE. 2,4-D metabolism: pathway of degradation of chlorocatechols by Arthrobacter sp. Journal of Agricultural and Food Chemistry. 17: 1021-6. PMID 21428341 DOI: 10.1021/Jf60165A037 |
0.419 |
|
| Show low-probability matches. |