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Jeffrey Shabanowitz - Publications

Affiliations: 
Chemistry University of Virginia, Charlottesville, VA 
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319 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Leyden MR, Gowen B, Gonzalez-Romero R, Eirin-Lopez JM, Kim BH, Hayashi F, McCartney J, Zhang PC, Kubo-Irie M, Shabanowitz J, Hunt DF, Ferree PM, Kasinsky H, Ausio J. Protamines and the sperm nuclear basic proteins Pandora's Box of Insects. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. PMID 38408323 DOI: 10.1139/bcb-2023-0363  0.46
2023 Siqueira E, Kim BH, Reser L, Chow R, Delaney K, Esteller M, Ross MM, Shabanowitz J, Hunt DF, Guil S, Ausiö J. Analysis of the interplay between MeCP2 and histone H1 during differentiation of human ReNCell neural progenitor cells. Epigenetics. 18: 2276425. PMID 37976174 DOI: 10.1080/15592294.2023.2276425  0.471
2023 Huang X, Zentella R, Park J, Reser L, Bai DL, Ross MM, Shabanowitz J, Hunt DF, Sun TP. Phosphorylation Promotes DELLA Activity by Enhancing Its Binding to Histone H2A at Target Chromatin in . Biorxiv : the Preprint Server For Biology. PMID 37873288 DOI: 10.1101/2023.10.10.561786  0.499
2023 Lorton BM, Warren C, Ilyas H, Nandigrami P, Hegde S, Cahill S, Lehman SM, Shabanowitz J, Hunt DF, Fiser A, Cowburn D, Shechter D. Glutamylation of Npm2 and Nap1 acidic disordered regions increases DNA charge mimicry to enhance chaperone efficiency. Biorxiv : the Preprint Server For Biology. PMID 37790377 DOI: 10.1101/2023.09.18.558337  0.438
2023 Kumar S, Wang Y, Zhou Y, Dillard L, Li FW, Sciandra CA, Sui N, Zentella R, Zahn E, Shabanowitz J, Hunt DF, Borgnia MJ, Bartesaghi A, Sun TP, Zhou P. Structure and dynamics of the Arabidopsis O-fucosyltransferase SPINDLY. Nature Communications. 14: 1538. PMID 36941311 DOI: 10.1038/s41467-023-37279-1  0.472
2023 Kemp BA, Howell NL, Gildea JJ, Hinkle JD, Shabanowitz J, Hunt DF, Conaway MR, Keller SR, Carey RM. Evidence That Binding of Cyclic GMP to the Extracellular Domain of Na/K-ATPase Mediates Natriuresis. Circulation Research. PMID 36919600 DOI: 10.1161/CIRCRESAHA.122.321693  0.37
2023 Zentella R, Wang Y, Zahn E, Hu J, Jiang L, Shabanowitz J, Hunt DF, Sun TP. SPINDLY O-fucosylates nuclear and cytoplasmic proteins involved in diverse cellular processes in plants. Plant Physiology. PMID 36740243 DOI: 10.1093/plphys/kiad011  0.454
2021 Duselis EM, Panepinto MC, Syka JEP, Mullen C, D'Ippolito RA, English AM, Ugrin SA, Shabanowitz J, Hunt DF. Improved Sequence Analysis of Intact Proteins by Parallel Ion Parking during Electron Transfer Dissociation. Analytical Chemistry. 93: 15728-15735. PMID 34788003 DOI: 10.1021/acs.analchem.1c03652  0.441
2021 Panepinto MC, Duselis EM, Shabanowitz J, Hunt DF. Nitrogen-Containing Aromatic Radical Anions Perform Multiple Proton and Electron Transfers Near-Simultaneously with Multiply Protonated Cations. Analytical Chemistry. 93: 14365-14368. PMID 34670079 DOI: 10.1021/acs.analchem.1c03801  0.403
2021 Maron MI, Lehman SM, Gayatri S, DeAngelo JD, Hegde S, Lorton BM, Sun Y, Bai DL, Sidoli S, Gupta V, Marunde MR, Bone JR, Sun ZW, Bedford MT, Shabanowitz J, et al. Independent transcriptomic and proteomic regulation by type I and II protein arginine methyltransferases. Iscience. 24: 102971. PMID 34505004 DOI: 10.1016/j.isci.2021.102971  0.433
2021 Penny SA, Abelin JG, Malaker SA, Myers PT, Saeed AZ, Steadman LG, Bai DL, Ward ST, Shabanowitz J, Hunt DF, Cobbold M. Tumor Infiltrating Lymphocytes Target HLA-I Phosphopeptides Derived From Cancer Signaling in Colorectal Cancer. Frontiers in Immunology. 12: 723566. PMID 34504498 DOI: 10.3389/fimmu.2021.723566  0.404
2021 McCloud RL, Yuan K, Mahoney KE, Bai DL, Shabanowitz J, Ross MM, Hunt DF, Hsu KL. Direct Target Site Identification of a Sulfonyl-Triazole Covalent Kinase Probe by LC-MS Chemical Proteomics. Analytical Chemistry. PMID 34431655 DOI: 10.1021/acs.analchem.1c01591  0.485
2021 Weisbrod CR, Anderson LC, Hendrickson CL, Schaffer LV, Shortreed MR, Smith LM, Shabanowitz J, Hunt DF. Advanced Strategies for Proton-Transfer Reactions Coupled with Parallel Ion Parking on a 21 T FT-ICR MS for Intact Protein Analysis. Analytical Chemistry. PMID 34165955 DOI: 10.1021/acs.analchem.1c00847  0.782
2021 Mahoney KE, Shabanowitz J, Hunt DF. MHC Phosphopeptides: Promising Targets for Immunotherapy of Cancer and Other Chronic Diseases. Molecular & Cellular Proteomics : McP. 20: 100112. PMID 34129940 DOI: 10.1016/j.mcpro.2021.100112  0.571
2020 Srzentić K, Fornelli L, Tsybin YO, Loo JA, Seckler H, Agar JN, Anderson LC, Bai DL, Beck A, Brodbelt JS, van der Burgt YEM, Chamot-Rooke J, Chatterjee S, Chen Y, Clarke DJ, ... ... Shabanowitz J, et al. Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 32812765 DOI: 10.1021/Jasms.0C00036  0.757
2020 D'Ippolito RA, Panepinto M, Mahoney KE, Bai DL, Shabanowitz J, Hunt DF. Sequencing a bispecific antibody by controlling chain concentration effects when using an immobilized nonspecific protease. Analytical Chemistry. PMID 32597636 DOI: 10.1021/Acs.Analchem.0C01126  0.527
2020 Aguilar-Cuenca R, Llorente-González C, Chapman JR, Talayero VC, Garrido-Casado M, Delgado-Arévalo C, Millán-Salanova M, Shabanowitz J, Hunt DF, Sellers JR, Heissler SM, Vicente-Manzanares M. Tyrosine Phosphorylation of the Myosin Regulatory Light Chain Controls Non-muscle Myosin II Assembly and Function in Migrating Cells. Current Biology : Cb. PMID 32502416 DOI: 10.1016/J.Cub.2020.04.057  0.503
2020 Cheema MS, Good KV, Kim B, Soufari H, O'Sullivan C, Freeman ME, Stefanelli G, Casas CR, Zengeler KE, Kennedy AJ, Eirin Lopez JM, Howard PL, Zovkic IB, Shabanowitz J, Dryhurst DD, et al. Deciphering the Enigma of the Histone H2A.Z-1/H2A.Z-2 Isoforms: Novel Insights and Remaining Questions. Cells. 9. PMID 32397240 DOI: 10.3390/Cells9051167  0.505
2020 Engelhard VH, Obeng RC, Cummings KL, Petroni GR, Ambakhutwala AL, Chianese-Bullock KA, Smith KT, Lulu A, Varhegyi N, Smolkin ME, Myers P, Mahoney KE, Shabanowitz J, Buettner N, Hall EH, et al. MHC-restricted phosphopeptide antigens: preclinical validation and first-in-humans clinical trial in participants with high-risk melanoma. Journal For Immunotherapy of Cancer. 8. PMID 32385144 DOI: 10.1136/Jitc-2019-000262  0.533
2019 Dinesh RK, Barnhill B, Ilanges A, Wu L, Michelson DA, Senigl F, Alinikula J, Shabanowitz J, Hunt DF, Schatz DG. Transcription factor binding at immunoglobulin enhancers is linked to somatic hypermutation targeting. European Journal of Immunology. PMID 31821534 DOI: 10.1002/Eji.201948357  0.499
2019 Heather JM, Myers PT, Shi F, Aziz-Zanjani MO, Mahoney KE, Perez M, Morin B, Brittsan C, Shabanowitz J, Hunt DF, Cobbold M. Murine xenograft bioreactors for human immunopeptidome discovery. Scientific Reports. 9: 18558. PMID 31811195 DOI: 10.1038/S41598-019-54700-2  0.548
2019 Hinkle J, D'Ippolito RA, Panepinto MC, Wang W, Bai DL, Shabanowitz J, Hunt DF. Unambiguous Sequence Characterization of a Monoclonal Antibody in a Single Analysis Using a Nonspecific Immobilized Enzyme Reactor. Analytical Chemistry. PMID 31584792 DOI: 10.1021/Acs.Analchem.9B02666  0.545
2019 D'Ippolito RA, Minamino N, Rivera-Casas C, Cheema MS, Bai DL, Kasinsky HE, Shabanowitz J, Eirin-Lopez JM, Ueda T, Hunt DF, Ausió J. Protamines from liverwort are produced by posttranslational cleavage and C-terminal di-aminopropanelation of several male germ-specific H1 histones. The Journal of Biological Chemistry. PMID 31527083 DOI: 10.1074/Jbc.Ra119.010316  0.543
2019 Ugrin SA, English AM, Syka JEP, Bai DL, Anderson LC, Shabanowitz J, Hunt DF. Ion-Ion Proton Transfer and Parallel Ion Parking for the Analysis of Mixtures of Intact Proteins on a Modified Orbitrap Mass Analyzer. Journal of the American Society For Mass Spectrometry. PMID 31392699 DOI: 10.1007/S13361-019-02290-8  0.763
2019 Ma J, Wang W, Li Z, Shabanowitz J, Hunt DF, Hart GW. O-GlcNAc Site Mapping by Using a Combination of Chemoenzymatic Labeling, Copper-Free Click Chemistry, Reductive Cleavage, and Electron-Transfer Dissociation Mass Spectrometry. Analytical Chemistry. PMID 30657688 DOI: 10.1021/Acs.Analchem.8B05688  0.524
2019 Dinesh RK, Barnhill B, Ilanges A, Wu L, Michelson DA, Senigl F, Alinikula J, Shabanowitz J, Hunt DF, Schatz DG. Author response for "Transcription factor binding at immunoglobulin enhancers is linked to somatic hypermutation targeting" European Journal of Immunology. DOI: 10.1002/Eji.201948357/V2/Response1  0.455
2018 Simon DN, Wriston A, Fan Q, Shabanowitz J, Florwick A, Dharmaraj T, Peterson SB, Gruenbaum Y, Carlson CR, Grønning-Wang LM, Hunt DF, Wilson KL. OGT (-GlcNAc Transferase) Selectively Modifies Multiple Residues Unique to Lamin A. Cells. 7. PMID 29772801 DOI: 10.3390/Cells7050044  0.483
2018 Grützmann K, Krimmer M, Thimme R, Trantham P, Penny S, Curbishley S, Millar D, Speers E, Adams D, Heather J, Meiß F, Rafei-Shamsabadi D, Casetti F, Shabanowitz J, Hunt D, et al. The role of phosphopeptide neoantigens in cancer immunotherapy Zeitschrift Fur Gastroenterologie. 56. DOI: 10.1055/S-0037-1612842  0.358
2017 Martínez-Turiño S, Pérez JJ, Hervás M, Navajas R, Ciordia S, Udeshi ND, Shabanowitz J, Hunt DF, García JA. Phosphorylation coexists with O-GlcNAcylation in a plant virus protein and influences viral infection. Molecular Plant Pathology. PMID 29024291 DOI: 10.1111/Mpp.12626  0.503
2017 Mohammed F, Stones DH, Zarling AL, Willcox CR, Shabanowitz J, Cummings KL, Hunt DF, Cobbold M, Engelhard VH, Willcox BE. The antigenic identity of human class I MHC phosphopeptides is critically dependent upon phosphorylation status. Oncotarget. 8: 54160-54172. PMID 28903331 DOI: 10.18632/Oncotarget.16952  0.558
2017 Pavlos R, McKinnon EJ, Ostrov DA, Peters B, Buus S, Koelle D, Chopra A, Schutte R, Rive C, Redwood A, Restrepo S, Bracey A, Kaever T, Myers P, Speers E, ... ... Shabanowitz J, et al. Shared peptide binding of HLA Class I and II alleles associate with cutaneous nevirapine hypersensitivity and identify novel risk alleles. Scientific Reports. 7: 8653. PMID 28819312 DOI: 10.1038/S41598-017-08876-0  0.516
2017 Weisbrod CR, Kaiser NK, Syka JEP, Early L, Mullen C, Dunyach JJ, English AM, Anderson LC, Blakney GT, Shabanowitz J, Hendrickson CL, Marshall AG, Hunt DF. Front-End Electron Transfer Dissociation Coupled to a 21 Tesla FT-ICR Mass Spectrometer for Intact Protein Sequence Analysis. Journal of the American Society For Mass Spectrometry. PMID 28721671 DOI: 10.1007/S13361-017-1702-3  0.772
2017 Mohammed F, Stones DH, Zarling AL, Willcox CR, Shabanowitz J, Cummings KL, Hunt DF, Cobbold M, Engelhard VH, Willcox BE. The antigenic identity of human class I MHC phosphopeptides is critically dependent upon phosphorylation status. Oncotarget. PMID 28446731 DOI: 10.18632/oncotarget.16952  0.5
2017 Sim MJ, Malaker SA, Khan A, Stowell JM, Shabanowitz J, Peterson ME, Rajagopalan S, Hunt DF, Altmann DM, Long EO, Boyton RJ. Canonical and Cross-reactive Binding of NK Cell Inhibitory Receptors to HLA-C Allotypes Is Dictated by Peptides Bound to HLA-C. Frontiers in Immunology. 8: 193. PMID 28352266 DOI: 10.3389/Fimmu.2017.00193  0.433
2017 Bergmann T, Lindvall M, Moore E, Moore E, Sidney J, Miller D, Tallmadge RL, Myers PT, Malaker SA, Shabanowitz J, Osterrieder N, Peters B, Hunt DF, Antczak DF, Sette A. Peptide-binding motifs of two common equine class I MHC molecules in Thoroughbred horses. Immunogenetics. PMID 28315936 DOI: 10.1007/S00251-017-0978-6  0.533
2017 Malaker SA, Penny SA, Steadman LG, Myers PT, Loke J, Raghavan M, Bai DL, Shabanowitz J, Hunt D, Cobbold M. Identification of glycopeptides as post-translationally modified neoantigens in leukemia. Cancer Immunology Research. PMID 28314751 DOI: 10.1158/2326-6066.Cir-16-0280  0.549
2017 Zentella R, Sui N, Barnhill B, Hsieh WP, Hu J, Shabanowitz J, Boyce M, Olszewski NE, Zhou P, Hunt DF, Sun TP. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nature Chemical Biology. 13: 479-485. PMID 28244988 DOI: 10.1038/Nchembio.2320  0.479
2016 Stankovic A, Guo LY, Mata JF, Bodor DL, Cao XJ, Bailey AO, Shabanowitz J, Hunt DF, Garcia BA, Black BE, Jansen LE. A Dual Inhibitory Mechanism Sufficient to Maintain Cell-Cycle-Restricted CENP-A Assembly. Molecular Cell. PMID 28017591 DOI: 10.1016/J.Molcel.2016.11.021  0.523
2016 Malaker SA, Ferracane MJ, Depontieu FR, Zarling AL, Shabanowitz J, Bai DL, Topalian SL, Engelhard VH, Hunt DF. Identification and Characterization of Complex Glycosylated Peptides Presented by the MHC Class II Processing Pathway in Melanoma. Journal of Proteome Research. PMID 27550523 DOI: 10.1021/Acs.Jproteome.6B00496  0.545
2016 Anderson LC, Karch KR, Ugrin SA, Coradin M, English AM, Sidoli S, Shabanowitz J, Garcia BA, Hunt DF. Analyses of Histone Proteoforms Using Front-End Electron Transfer Dissociation-Enabled Orbitrap Instruments. Molecular & Cellular Proteomics : McP. PMID 26785730 DOI: 10.1074/Mcp.O115.053843  0.776
2016 Zentella R, Hu J, Hsieh WP, Matsumoto PA, Dawdy A, Barnhill B, Oldenhof H, Hartweck LM, Maitra S, Thomas SG, Cockrell S, Boyce M, Shabanowitz J, Hunt DF, Olszewski NE, et al. O-GlcNAcylation of master growth repressor DELLA by SECRET AGENT modulates multiple signaling pathways in Arabidopsis. Genes & Development. 30: 164-76. PMID 26773002 DOI: 10.1101/Gad.270587.115  0.48
2016 Sidney J, Schloss J, Moore C, Lindvall M, Wriston A, Hunt DF, Shabanowitz J, DiLorenzo TP, Sette A. Characterization of the peptide binding specificity of the HLA class I alleles B*38:01 and B*39:06. Immunogenetics. PMID 26754738 DOI: 10.1007/S00251-015-0898-2  0.528
2016 Ager C, Reilley M, Nicholas C, Bartkowiak T, Jaiswal A, Curran M, Albershardt TC, Bajaj A, Archer JF, Reeves RS, Ngo LY, Berglund P, ter Meulen J, Denis C, Ghadially H, ... ... Shabanowitz J, ... ... Shabanowitz J, et al. 31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016): part two Journal For Immunotherapy of Cancer. 4. DOI: 10.1186/S40425-016-0173-6  0.419
2016 Penny S, Malaker S, Steadman L, Trantham P, Bai D, Shabanowitz J, Hunt D, Cobbold M. Glycosylated and methylated peptides as neoantigens in leukaemia European Journal of Cancer. 61. DOI: 10.1016/S0959-8049(16)61765-3  0.524
2016 Penny S, Abelin J, Saeed A, Malaker S, Trantham P, Shabanowitz J, Ward S, Hunt D, Cobbold M. Phosphopeptides as novel tumour antigens in colorectal cancer European Journal of Cancer. 61: S213. DOI: 10.1016/S0959-8049(16)61751-3  0.442
2015 Bailey AO, Panchenko T, Shabanowitz J, Lehman SM, Bai DL, Hunt DF, Black BE, Foltz DR. Identification of the posttranslational modifications present in centromeric chromatin. Molecular & Cellular Proteomics : McP. PMID 26685127 DOI: 10.1074/Mcp.M115.053710  0.507
2015 Zhang L, English AM, Bai DL, Ugrin SA, Shabanowitz J, Ross MM, Hunt DF, Wang WH. Analysis of Monoclonal Antibody Sequence and Post-translational Modifications by Time-controlled Proteolysis and Tandem Mass Spectrometry. Molecular & Cellular Proteomics : McP. PMID 26621848 DOI: 10.1074/Mcp.O115.056721  0.57
2015 Bergmann T, Moore C, Sidney J, Miller D, Tallmadge R, Harman RM, Oseroff C, Wriston A, Shabanowitz J, Hunt DF, Osterrieder N, Peters B, Antczak DF, Sette A. The common equine class I molecule Eqca-1*00101 (ELA-A3.1) is characterized by narrow peptide binding and T cell epitope repertoires. Immunogenetics. PMID 26399241 DOI: 10.1007/S00251-015-0872-Z  0.557
2015 Abelin JG, Trantham PD, Penny SA, Patterson AM, Ward ST, Hildebrand WH, Cobbold M, Bai DL, Shabanowitz J, Hunt DF. Complementary IMAC enrichment methods for HLA-associated phosphopeptide identification by mass spectrometry. Nature Protocols. 10: 1308-18. PMID 26247297 DOI: 10.1038/Nprot.2015.086  0.555
2015 Metushi IG, Wriston A, Banerjee P, Gohlke BO, English AM, Lucas A, Moore C, Sidney J, Buus S, Ostrov DA, Mallal S, Phillips E, Shabanowitz J, Hunt DF, Preissner R, et al. Acyclovir Has Low but Detectable Influence on HLA-B*57:01 Specificity without Inducing Hypersensitivity. Plos One. 10: e0124878. PMID 26024233 DOI: 10.1371/Journal.Pone.0124878  0.541
2015 Juanes-Garcia A, Chapman JR, Aguilar-Cuenca R, Delgado-Arevalo C, Hodges J, Whitmore LA, Shabanowitz J, Hunt DF, Horwitz AR, Vicente-Manzanares M. A regulatory motif in nonmuscle myosin II-B regulates its role in migratory front-back polarity. The Journal of Cell Biology. 209: 23-32. PMID 25869664 DOI: 10.1083/Jcb.201407059  0.499
2015 Anderson LC, English AM, Wang W, Bai DL, Shabanowitz J, Hunt DF. Protein derivatization and sequential ion/ion reactions to enhance sequence coverage produced by electron transfer dissociation mass spectrometry. International Journal of Mass Spectrometry. 377: 617-624. PMID 25844056 DOI: 10.1016/J.Ijms.2014.06.023  0.763
2015 Hunt DF, Shabanowitz J, Bai DL. Peptide Sequence Analysis by Electron Transfer Dissociation Mass Spectrometry: A Web-Based Tutorial. Journal of the American Society For Mass Spectrometry. 26: 1256-8. PMID 25821049 DOI: 10.1007/S13361-015-1105-2  0.527
2015 Onikubo T, Nicklay JJ, Xing L, Warren C, Anson B, Wang WL, Burgos ES, Ruff SE, Shabanowitz J, Cheng RH, Hunt DF, Shechter D. Developmentally Regulated Post-translational Modification of Nucleoplasmin Controls Histone Sequestration and Deposition. Cell Reports. PMID 25772360 DOI: 10.1016/J.Celrep.2015.02.038  0.526
2015 Albrecht LV, Zhang L, Shabanowitz J, Purevjav E, Towbin JA, Hunt DF, Green KJ. GSK3- and PRMT-1-dependent modifications of desmoplakin control desmoplakin-cytoskeleton dynamics. The Journal of Cell Biology. 208: 597-612. PMID 25733715 DOI: 10.1083/Jcb.201406020  0.523
2014 Wang WL, Anderson LC, Nicklay JJ, Chen H, Gamble MJ, Shabanowitz J, Hunt DF, Shechter D. Phosphorylation and arginine methylation mark histone H2A prior to deposition during Xenopus laevis development. Epigenetics & Chromatin. 7: 22. PMID 25302076 DOI: 10.1186/1756-8935-7-22  0.764
2014 Papazyan R, Voronina E, Chapman JR, Luperchio TR, Gilbert TM, Meier E, Mackintosh SG, Shabanowitz J, Tackett AJ, Reddy KL, Coyne RS, Hunt DF, Liu Y, Taverna SD. Methylation of histone H3K23 blocks DNA damage in pericentric heterochromatin during meiosis. Elife. 3: e02996. PMID 25161194 DOI: 10.7554/Elife.02996  0.518
2014 Bullen JW, Balsbaugh JL, Chanda D, Shabanowitz J, Hunt DF, Neumann D, Hart GW. Cross-talk between two essential nutrient-sensitive enzymes: O-GlcNAc transferase (OGT) and AMP-activated protein kinase (AMPK). The Journal of Biological Chemistry. 289: 10592-606. PMID 24563466 DOI: 10.1074/Jbc.M113.523068  0.51
2014 Papazyan R, Voronina E, Chapman JR, Luperchio TR, Gilbert TM, Meier E, Mackintosh SG, Shabanowitz J, Tackett AJ, Reddy KL, Coyne RS, Hunt DF, Liu Y, Taverna SD. Author response: Methylation of histone H3K23 blocks DNA damage in pericentric heterochromatin during meiosis Elife. DOI: 10.7554/Elife.02996.021  0.465
2014 Penny SA, Abelin JG, Saeed AZ, Malaker SA, Trantham PD, Shabanowitz J, Ward ST, Hunt DF, Cobbold M. Abstract 3627: Phosphopeptides as novel T cell epitopes in colorectal cancer Cancer Research. 74: 3627-3627. DOI: 10.1158/1538-7445.Am2014-3627  0.502
2013 Wu HA, Balsbaugh JL, Chandler H, Georgilis A, Zullow H, Shabanowitz J, Hunt DF, Gil J, Peters G, Bernstein E. Mitogen-activated protein kinase signaling mediates phosphorylation of polycomb ortholog Cbx7. The Journal of Biological Chemistry. 288: 36398-408. PMID 24194518 DOI: 10.1074/Jbc.M113.486266  0.551
2013 Chen S, Li Y, Depontieu FR, McMiller TL, English AM, Shabanowitz J, Kos F, Sidney J, Sette A, Rosenberg SA, Hunt DF, Mariuzza RA, Topalian SL. Structure-based design of altered MHC class II-restricted peptide ligands with heterogeneous immunogenicity. Journal of Immunology (Baltimore, Md. : 1950). 191: 5097-106. PMID 24108701 DOI: 10.4049/Jimmunol.1300467  0.533
2013 Cobbold M, De La Peña H, Norris A, Polefrone JM, Qian J, English AM, Cummings KL, Penny S, Turner JE, Cottine J, Abelin JG, Malaker SA, Zarling AL, Huang HW, Goodyear O, ... ... Shabanowitz J, et al. MHC class I-associated phosphopeptides are the targets of memory-like immunity in leukemia. Science Translational Medicine. 5: 203ra125. PMID 24048523 DOI: 10.1126/Scitranslmed.3006061  0.492
2013 Berk JM, Maitra S, Dawdy AW, Shabanowitz J, Hunt DF, Wilson KL. O-Linked β-N-acetylglucosamine (O-GlcNAc) regulates emerin binding to barrier to autointegration factor (BAF) in a chromatin- and lamin B-enriched "niche". The Journal of Biological Chemistry. 288: 30192-209. PMID 24014020 DOI: 10.1074/Jbc.M113.503060  0.504
2013 Earley L, Anderson LC, Bai DL, Mullen C, Syka JE, English AM, Dunyach JJ, Stafford GC, Shabanowitz J, Hunt DF, Compton PD. Front-end electron transfer dissociation: a new ionization source. Analytical Chemistry. 85: 8385-90. PMID 23909443 DOI: 10.1021/Ac401783F  0.752
2013 Bailey AO, Panchenko T, Sathyan KM, Petkowski JJ, Pai PJ, Bai DL, Russell DH, Macara IG, Shabanowitz J, Hunt DF, Black BE, Foltz DR. Posttranslational modification of CENP-A influences the conformation of centromeric chromatin. Proceedings of the National Academy of Sciences of the United States of America. 110: 11827-32. PMID 23818633 DOI: 10.1073/Pnas.1300325110  0.538
2013 Pérez Jde J, Udeshi ND, Shabanowitz J, Ciordia S, Juárez S, Scott CL, Olszewski NE, Hunt DF, García JA. O-GlcNAc modification of the coat protein of the potyvirus Plum pox virus enhances viral infection. Virology. 442: 122-31. PMID 23639873 DOI: 10.1016/J.Virol.2013.03.029  0.471
2013 Abreu CM, Kumar R, Hamilton D, Dawdy AW, Creavin K, Eivers S, Finn K, Balsbaugh JL, O'Connor R, Kiely PA, Shabanowitz J, Hunt DF, Grenon M, Lowndes NF. Site-specific phosphorylation of the DNA damage response mediator rad9 by cyclin-dependent kinases regulates activation of checkpoint kinase 1. Plos Genetics. 9: e1003310. PMID 23593009 DOI: 10.1371/Journal.Pgen.1003310  0.507
2013 Mothé BR, Southwood S, Sidney J, English AM, Wriston A, Hoof I, Shabanowitz J, Hunt DF, Sette A. Peptide-binding motifs associated with MHC molecules common in Chinese rhesus macaques are analogous to those of human HLA supertypes and include HLA-B27-like alleles. Immunogenetics. 65: 371-86. PMID 23417323 DOI: 10.1007/S00251-013-0686-9  0.5
2013 Kim YC, Jahren N, Stone MD, Udeshi ND, Markowski TW, Witthuhn BA, Shabanowitz J, Hunt DF, Olszewski NE. Identification and origin of N-linked β-D-N-acetylglucosamine monosaccharide modifications on Arabidopsis proteins. Plant Physiology. 161: 455-64. PMID 23144189 DOI: 10.1104/Pp.112.208900  0.499
2013 Wang W, Nicklay JJ, Anderson L, Strukl J, Onikubo T, Shabanowitz J, Hunt DF, Shechter D. Developmental regulation of histone H2A deposition via serine-1 phosphorylation Epigenetics & Chromatin. 6. DOI: 10.1186/1756-8935-6-S1-P74  0.759
2013 Onikubo T, Nicklav JJ, Wang W, Shabanowitz J, Hunt DF, Shechter D. Developmental regulation of nucleoplasmin function by phosphorylation, glutamylation, and methylation Epigenetics & Chromatin. 6. DOI: 10.1186/1756-8935-6-S1-P61  0.54
2013 Papazvan R, Voronina E, Chapman JR, Gilbert TM, Meier E, Shabanowitz J, Hunt DF, Liu Y, Taverna SD. Methylation of histone H3 at lysine 23 in meiotic heterochromatin Epigenetics & Chromatin. 6. DOI: 10.1186/1756-8935-6-S1-O13  0.512
2012 Mitchell DJ, Blasier KR, Jeffery ED, Ross MW, Pullikuth AK, Suo D, Park J, Smiley WR, Lo KW, Shabanowitz J, Deppmann CD, Trinidad JC, Hunt DF, Catling AD, Pfister KK. Trk activation of the ERK1/2 kinase pathway stimulates intermediate chain phosphorylation and recruits cytoplasmic dynein to signaling endosomes for retrograde axonal transport. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 15495-510. PMID 23115187 DOI: 10.1523/Jneurosci.5599-11.2012  0.488
2012 Petkowski JJ, Schaner Tooley CE, Anderson LC, Shumilin IA, Balsbaugh JL, Shabanowitz J, Hunt DF, Minor W, Macara IG. Substrate specificity of mammalian N-terminal α-amino methyltransferase NRMT. Biochemistry. 51: 5942-50. PMID 22769851 DOI: 10.1021/Bi300278F  0.754
2012 Ostrov DA, Grant BJ, Pompeu YA, Sidney J, Harndahl M, Southwood S, Oseroff C, Lu S, Jakoncic J, de Oliveira CA, Yang L, Mei H, Shi L, Shabanowitz J, English AM, et al. Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire. Proceedings of the National Academy of Sciences of the United States of America. 109: 9959-64. PMID 22645359 DOI: 10.1073/Pnas.1207934109  0.502
2012 Alfaro JF, Gong CX, Monroe ME, Aldrich JT, Clauss TR, Purvine SO, Wang Z, Camp DG, Shabanowitz J, Stanley P, Hart GW, Hunt DF, Yang F, Smith RD. Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets. Proceedings of the National Academy of Sciences of the United States of America. 109: 7280-5. PMID 22517741 DOI: 10.1073/Pnas.1200425109  0.496
2012 Wu D, Chapman JR, Wang L, Harris TE, Shabanowitz J, Hunt DF, Fu Z. Intestinal cell kinase (ICK) promotes activation of mTOR complex 1 (mTORC1) through phosphorylation of Raptor Thr-908. The Journal of Biological Chemistry. 287: 12510-9. PMID 22356909 DOI: 10.1074/Jbc.M111.302117  0.542
2012 Sridhara V, Bai DL, Chi A, Shabanowitz J, Hunt DF, Bryant SH, Geer LY. Increasing peptide identifications and decreasing search times for ETD spectra by pre-processing and calculation of parent precursor charge. Proteome Science. 10: 8. PMID 22321509 DOI: 10.1186/1477-5956-10-8  0.523
2012 Moore C, Sidney J, English AM, Wriston A, Hunt DF, Shabanowitz J, Southwood S, Bradley K, Lafont BA, Mothé BR, Sette A. Identification of the peptide-binding motif recognized by the pigtail macaque class I MHC molecule Mane-A1*082:01 (Mane A*0301). Immunogenetics. 64: 461-8. PMID 22278177 DOI: 10.1007/S00251-012-0600-X  0.539
2012 Compton PD, Strukl JV, Bai DL, Shabanowitz J, Hunt DF. Optimization of electron transfer dissociation via informed selection of reagents and operating parameters. Analytical Chemistry. 84: 1781-5. PMID 22182179 DOI: 10.1021/Ac202807H  0.515
2012 Zarling AL, Obeng RC, Cummings KL, Desch AN, English AM, Cottine JM, Norris A, Brill LB, Deacon DH, Conaway M, Shabanowitz J, Hunt DF, Slingluff CL, Engelhard VH. Abstract 1584: MHC-restricted phosphopeptides as broad-based immunotherapeutic targets for cancer Cancer Research. 72: 1584-1584. DOI: 10.1158/1538-7445.Am2012-1584  0.454
2011 Wilczek C, Chitta R, Woo E, Shabanowitz J, Chait BT, Hunt DF, Shechter D. Protein arginine methyltransferase Prmt5-Mep50 methylates histones H2A and H4 and the histone chaperone nucleoplasmin in Xenopus laevis eggs. The Journal of Biological Chemistry. 286: 42221-31. PMID 22009756 DOI: 10.1074/Jbc.M111.303677  0.527
2011 Kim YC, Udeshi ND, Balsbaugh JL, Shabanowitz J, Hunt DF, Olszewski NE. O-GlcNAcylation of the Plum pox virus capsid protein catalyzed by SECRET AGENT: characterization of O-GlcNAc sites by electron transfer dissociation mass spectrometry. Amino Acids. 40: 869-76. PMID 20676902 DOI: 10.1007/S00726-010-0706-0  0.5
2010 Gordon V, Bhadel S, Wunderlich W, Zhang J, Ficarro SB, Mollah SA, Shabanowitz J, Hunt DF, Xenarios I, Hahn WC, Conaway M, Carey MF, Gioeli D. CDK9 regulates AR promoter selectivity and cell growth through serine 81 phosphorylation. Molecular Endocrinology (Baltimore, Md.). 24: 2267-80. PMID 20980437 DOI: 10.1210/Me.2010-0238  0.513
2010 Hao Y, Du Q, Chen X, Zheng Z, Balsbaugh JL, Maitra S, Shabanowitz J, Hunt DF, Macara IG. Par3 controls epithelial spindle orientation by aPKC-mediated phosphorylation of apical Pins. Current Biology : Cb. 20: 1809-18. PMID 20933426 DOI: 10.1016/J.Cub.2010.09.032  0.483
2010 Hall EH, Balsbaugh JL, Rose KL, Shabanowitz J, Hunt DF, Brautigan DL. Comprehensive analysis of phosphorylation sites in Tensin1 reveals regulation by p38MAPK. Molecular & Cellular Proteomics : McP. 9: 2853-63. PMID 20798394 DOI: 10.1074/Mcp.M110.003665  0.537
2010 Tooley CE, Petkowski JJ, Muratore-Schroeder TL, Balsbaugh JL, Shabanowitz J, Sabat M, Minor W, Hunt DF, Macara IG. NRMT is an alpha-N-methyltransferase that methylates RCC1 and retinoblastoma protein. Nature. 466: 1125-8. PMID 20668449 DOI: 10.1038/Nature09343  0.501
2010 Baker SP, Phillips J, Anderson S, Qiu Q, Shabanowitz J, Smith MM, Yates JR, Hunt DF, Grant PA. Histone H3 Thr 45 phosphorylation is a replication-associated post-translational modification in S. cerevisiae. Nature Cell Biology. 12: 294-8. PMID 20139971 DOI: 10.1038/Ncb2030  0.47
2010 Brims DR, Qian J, Jarchum I, Mikesh L, Palmieri E, Ramagopal UA, Malashkevich VN, Chaparro RJ, Lund T, Hattori M, Shabanowitz J, Hunt DF, Nathenson SG, Almo SC, Dilorenzo TP. Predominant occupation of the class I MHC molecule H-2Kwm7 with a single self-peptide suggests a mechanism for its diabetes-protective effect. International Immunology. 22: 191-203. PMID 20093428 DOI: 10.1093/Intimm/Dxp127  0.527
2010 Wang Z, Udeshi ND, Slawson C, Compton PD, Sakabe K, Cheung WD, Shabanowitz J, Hunt DF, Hart GW. Extensive crosstalk between O-GlcNAcylation and phosphorylation regulates cytokinesis. Science Signaling. 3: ra2. PMID 20068230 DOI: 10.1126/Scisignal.2000526  0.512
2010 Wang Z, Udeshi ND, O'Malley M, Shabanowitz J, Hunt DF, Hart GW. Enrichment and site mapping of O-linked N-acetylglucosamine by a combination of chemical/enzymatic tagging, photochemical cleavage, and electron transfer dissociation mass spectrometry. Molecular & Cellular Proteomics : McP. 9: 153-60. PMID 19692427 DOI: 10.1074/Mcp.M900268-Mcp200  0.536
2010 Hendrickson RC, Cicinnati VR, Albers A, Dworacki G, Gambotto A, Pagliano O, Tüting T, Mayordomo JI, Visus C, Appella E, Shabanowitz J, Hunt DF, DeLeo AB. Identification of a 17beta-hydroxysteroid dehydrogenase type 12 pseudogene as the source of a highly restricted BALB/c Meth A tumor rejection peptide. Cancer Immunology, Immunotherapy : Cii. 59: 113-24. PMID 19562340 DOI: 10.1007/S00262-009-0730-7  0.524
2009 Dryhurst D, Ishibashi T, Rose KL, Eirín-López JM, McDonald D, Silva-Moreno B, Veldhoen N, Helbing CC, Hendzel MJ, Shabanowitz J, Hunt DF, Ausió J. Characterization of the histone H2A.Z-1 and H2A.Z-2 isoforms in vertebrates. Bmc Biology. 7: 86. PMID 20003410 DOI: 10.1186/1741-7007-7-86  0.502
2009 Depontieu FR, Qian J, Zarling AL, McMiller TL, Salay TM, Norris A, English AM, Shabanowitz J, Engelhard VH, Hunt DF, Topalian SL. Identification of tumor-associated, MHC class II-restricted phosphopeptides as targets for immunotherapy. Proceedings of the National Academy of Sciences of the United States of America. 106: 12073-8. PMID 19581576 DOI: 10.1073/Pnas.0903852106  0.525
2009 Ishibashi T, Dryhurst D, Rose KL, Shabanowitz J, Hunt DF, Ausió J. Acetylation of vertebrate H2A.Z and its effect on the structure of the nucleosome. Biochemistry. 48: 5007-17. PMID 19385636 DOI: 10.1021/Bi900196C  0.488
2009 Shechter D, Chitta RK, Xiao A, Shabanowitz J, Hunt DF, Allis CD. A distinct H2A.X isoform is enriched in Xenopus laevis eggs and early embryos and is phosphorylated in the absence of a checkpoint. Proceedings of the National Academy of Sciences of the United States of America. 106: 749-54. PMID 19131518 DOI: 10.1073/Pnas.0812207106  0.51
2009 Chen F, Spano A, Goodman BE, Blasier KR, Sabat A, Jeffery E, Norris A, Shabanowitz J, Hunt DF, Lebedev N. Proteomic analysis and identification of the structural and regulatory proteins of the Rhodobacter capsulatus gene transfer agent. Journal of Proteome Research. 8: 967-73. PMID 19105630 DOI: 10.1021/Pr8006045  0.508
2009 Housley MP, Udeshi ND, Rodgers JT, Shabanowitz J, Puigserver P, Hunt DF, Hart GW. A PGC-1alpha-O-GlcNAc transferase complex regulates FoxO transcription factor activity in response to glucose. The Journal of Biological Chemistry. 284: 5148-57. PMID 19103600 DOI: 10.1074/Jbc.M808890200  0.467
2009 Shechter D, Nicklay JJ, Chitta RK, Shabanowitz J, Hunt DF, Allis CD. Analysis of histones in Xenopus laevis. I. A distinct index of enriched variants and modifications exists in each cell type and is remodeled during developmental transitions. The Journal of Biological Chemistry. 284: 1064-74. PMID 18957438 DOI: 10.1074/Jbc.M807273200  0.535
2009 Nicklay JJ, Shechter D, Chitta RK, Garcia BA, Shabanowitz J, Allis CD, Hunt DF. Analysis of histones in Xenopus laevis. II. mass spectrometry reveals an index of cell type-specific modifications on H3 and H4. The Journal of Biological Chemistry. 284: 1075-85. PMID 18957437 DOI: 10.1074/Jbc.M807274200  0.538
2008 Duncan EM, Muratore-Schroeder TL, Cook RG, Garcia BA, Shabanowitz J, Hunt DF, Allis CD. Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation. Cell. 135: 284-94. PMID 18957203 DOI: 10.1016/j.cell.2008.09.055  0.446
2008 Udeshi ND, Compton PD, Shabanowitz J, Hunt DF, Rose KL. Methods for analyzing peptides and proteins on a chromatographic timescale by electron-transfer dissociation mass spectrometry. Nature Protocols. 3: 1709-17. PMID 18927556 DOI: 10.1038/Nprot.2008.159  0.57
2008 Mohammed F, Cobbold M, Zarling AL, Salim M, Barrett-Wilt GA, Shabanowitz J, Hunt DF, Engelhard VH, Willcox BE. Phosphorylation-dependent interaction between antigenic peptides and MHC class I: a molecular basis for the presentation of transformed self. Nature Immunology. 9: 1236-43. PMID 18836451 DOI: 10.1038/Ni.1660  0.558
2008 Eisinger-Mathason TS, Andrade J, Groehler AL, Clark DE, Muratore-Schroeder TL, Pasic L, Smith JA, Shabanowitz J, Hunt DF, Macara IG, Lannigan DA. Codependent functions of RSK2 and the apoptosis-promoting factor TIA-1 in stress granule assembly and cell survival. Molecular Cell. 31: 722-36. PMID 18775331 DOI: 10.1016/J.Molcel.2008.06.025  0.48
2008 Rose KL, Li A, Zalenskaya I, Zhang Y, Unni E, Hodgson KC, Yu Y, Shabanowitz J, Meistrich ML, Hunt DF, Ausió J. C-terminal phosphorylation of murine testis-specific histone H1t in elongating spermatids. Journal of Proteome Research. 7: 4070-8. PMID 18698803 DOI: 10.1021/Pr8003908  0.51
2008 Prickett TD, Ninomiya-Tsuji J, Broglie P, Muratore-Schroeder TL, Shabanowitz J, Hunt DF, Brautigan DL. TAB4 stimulates TAK1-TAB1 phosphorylation and binds polyubiquitin to direct signaling to NF-kappaB. The Journal of Biological Chemistry. 283: 19245-54. PMID 18456659 DOI: 10.1074/Jbc.M800943200  0.516
2008 Housley MP, Rodgers JT, Udeshi ND, Kelly TJ, Shabanowitz J, Hunt DF, Puigserver P, Hart GW. O-GlcNAc regulates FoxO activation in response to glucose. The Journal of Biological Chemistry. 283: 16283-92. PMID 18420577 DOI: 10.1074/Jbc.M802240200  0.467
2008 Bernstein E, Muratore-Schroeder TL, Diaz RL, Chow JC, Changolkar LN, Shabanowitz J, Heard E, Pehrson JR, Hunt DF, Allis CD. A phosphorylated subpopulation of the histone variant macroH2A1 is excluded from the inactive X chromosome and enriched during mitosis. Proceedings of the National Academy of Sciences of the United States of America. 105: 1533-8. PMID 18227505 DOI: 10.1073/Pnas.0711632105  0.533
2008 Calvert ME, Keck KM, Ptak C, Shabanowitz J, Hunt DF, Pemberton LF. Phosphorylation by casein kinase 2 regulates Nap1 localization and function. Molecular and Cellular Biology. 28: 1313-25. PMID 18086883 DOI: 10.1128/Mcb.01035-07  0.533
2007 Udeshi ND, Shabanowitz J, Hunt DF, Rose KL. Analysis of proteins and peptides on a chromatographic timescale by electron-transfer dissociation MS. The Febs Journal. 274: 6269-76. PMID 18021239 DOI: 10.1111/J.1742-4658.2007.06148.X  0.577
2007 Mayhew MW, Jeffery ED, Sherman NE, Nelson K, Polefrone JM, Pratt SJ, Shabanowitz J, Parsons JT, Fox JW, Hunt DF, Horwitz AF. Identification of phosphorylation sites in betaPIX and PAK1. Journal of Cell Science. 120: 3911-8. PMID 17989089 DOI: 10.1242/Jcs.008177  0.46
2007 Chi A, Valenzuela L, Beard S, Mackey AJ, Shabanowitz J, Hunt DF, Jerez CA. Periplasmic proteins of the extremophile Acidithiobacillus ferrooxidans: a high throughput proteomics analysis. Molecular & Cellular Proteomics : McP. 6: 2239-51. PMID 17911085 DOI: 10.1074/Mcp.M700042-Mcp200  0.514
2007 Hunt DF, Henderson RA, Shabanowitz J, Sakaguchi K, Michel H, Sevilir N, Cox AL, Appella E, Engelhard VH. Pillars article: Characterization of peptides bound to the class I MHC molecule HLA-A2.1 by mass spectrometry. Science 1992. 255: 1261-1263. Journal of Immunology (Baltimore, Md. : 1950). 179: 2669-71. PMID 17709476  0.463
2007 Liu Y, Taverna SD, Muratore TL, Shabanowitz J, Hunt DF, Allis CD. RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena. Genes & Development. 21: 1530-45. PMID 17575054 DOI: 10.1101/Gad.1544207  0.502
2007 Garcia BA, Mollah S, Ueberheide BM, Busby SA, Muratore TL, Shabanowitz J, Hunt DF. Chemical derivatization of histones for facilitated analysis by mass spectrometry. Nature Protocols. 2: 933-8. PMID 17446892 DOI: 10.1038/Nprot.2007.106  0.591
2007 Goldfinger LE, Ptak C, Jeffery ED, Shabanowitz J, Han J, Haling JR, Sherman NE, Fox JW, Hunt DF, Ginsberg MH. An experimentally derived database of candidate Ras-interacting proteins. Journal of Proteome Research. 6: 1806-11. PMID 17439166 DOI: 10.1021/Pr060630L  0.479
2007 Chen T, Muratore TL, Schaner-Tooley CE, Shabanowitz J, Hunt DF, Macara IG. N-terminal alpha-methylation of RCC1 is necessary for stable chromatin association and normal mitosis. Nature Cell Biology. 9: 596-603. PMID 17435751 DOI: 10.1038/Ncb1572  0.521
2007 Hu ZZ, Valencia JC, Huang H, Chi A, Shabanowitz J, Hearing VJ, Appella E, Wu C. Comparative Bioinformatics Analyses and Profiling of Lysosome-Related Organelle Proteomes. International Journal of Mass Spectrometry. 259: 147-160. PMID 17375895 DOI: 10.1016/J.Ijms.2006.09.024  0.338
2007 Frum R, Busby SA, Ramamoorthy M, Deb S, Shabanowitz J, Hunt DF, Deb SP. HDM2-binding partners: interaction with translation elongation factor EF1alpha. Journal of Proteome Research. 6: 1410-7. PMID 17373842 DOI: 10.1021/Pr060584P  0.497
2007 Chi A, Bai DL, Geer LY, Shabanowitz J, Hunt DF. Analysis of intact proteins on a chromatographic time scale by electron transfer dissociation tandem mass spectrometry. International Journal of Mass Spectrometry. 259: 197-203. PMID 17364019 DOI: 10.1016/J.Ijms.2006.09.030  0.549
2007 Luo W, Peterson A, Garcia BA, Coombs G, Kofahl B, Heinrich R, Shabanowitz J, Hunt DF, Yost HJ, Virshup DM. Protein phosphatase 1 regulates assembly and function of the beta-catenin degradation complex. The Embo Journal. 26: 1511-21. PMID 17318175 DOI: 10.1038/Sj.Emboj.7601607  0.472
2007 Chi A, Huttenhower C, Geer LY, Coon JJ, Syka JE, Bai DL, Shabanowitz J, Burke DJ, Troyanskaya OG, Hunt DF. Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 104: 2193-8. PMID 17287358 DOI: 10.1073/Pnas.0607084104  0.534
2007 Taverna SD, Ueberheide BM, Liu Y, Tackett AJ, Diaz RL, Shabanowitz J, Chait BT, Hunt DF, Allis CD. Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini. Proceedings of the National Academy of Sciences of the United States of America. 104: 2086-91. PMID 17284592 DOI: 10.1073/Pnas.0610993104  0.528
2007 Garcia BA, Hake SB, Diaz RL, Kauer M, Morris SA, Recht J, Shabanowitz J, Mishra N, Strahl BD, Allis CD, Hunt DF. Organismal differences in post-translational modifications in histones H3 and H4. The Journal of Biological Chemistry. 282: 7641-55. PMID 17194708 DOI: 10.1074/Jbc.M607900200  0.532
2007 Morris SA, Rao B, Garcia BA, Hake SB, Diaz RL, Shabanowitz J, Hunt DF, Allis CD, Lieb JD, Strahl BD. Identification of histone H3 lysine 36 acetylation as a highly conserved histone modification. The Journal of Biological Chemistry. 282: 7632-40. PMID 17189264 DOI: 10.1074/Jbc.M607909200  0.527
2007 Lin CH, Platt MD, Ficarro SB, Hoofnagle MH, Shabanowitz J, Comai L, Hunt DF, Owens GK. Mass spectrometric identification of phosphorylation sites of rRNA transcription factor upstream binding factor. American Journal of Physiology. Cell Physiology. 292: C1617-24. PMID 17182730 DOI: 10.1152/Ajpcell.00176.2006  0.523
2007 Garcia BA, Shabanowitz J, Hunt DF. Characterization of histones and their post-translational modifications by mass spectrometry. Current Opinion in Chemical Biology. 11: 66-73. PMID 17157550 DOI: 10.1016/J.Cbpa.2006.11.022  0.545
2007 Herlevsen M, Oxford G, Ptak C, Shabanowitz J, Hunt DF, Conaway M, Theodorescu D. A novel model to identify interaction partners of the PTEN tumor suppressor gene in human bladder cancer. Biochemical and Biophysical Research Communications. 352: 549-55. PMID 17126809 DOI: 10.1016/J.Bbrc.2006.11.067  0.477
2007 Harris TE, Huffman TA, Chi A, Shabanowitz J, Hunt DF, Kumar A, Lawrence JC. Insulin controls subcellular localization and multisite phosphorylation of the phosphatidic acid phosphatase, lipin 1. The Journal of Biological Chemistry. 282: 277-86. PMID 17105729 DOI: 10.1074/Jbc.M609537200  0.501
2007 Cobbold M, Polefrone JM, Qian J, Mohammed F, Norris A, De Santis AM, Zarling AL, Shabanowitz J, Willcox BE, Williams ME, Hunt DF, Engelhard VH. Immune Targeting of the Phosphoproteome in Lymphoma and Leukemia. Blood. 110: 285-285. DOI: 10.1182/Blood.V110.11.285.285  0.512
2006 Mikesh LM, Ueberheide B, Chi A, Coon JJ, Syka JE, Shabanowitz J, Hunt DF. The utility of ETD mass spectrometry in proteomic analysis. Biochimica Et Biophysica Acta. 1764: 1811-22. PMID 17118725 DOI: 10.1016/J.Bbapap.2006.10.003  0.582
2006 Dorus S, Busby SA, Gerike U, Shabanowitz J, Hunt DF, Karr TL. Genomic and functional evolution of the Drosophila melanogaster sperm proteome. Nature Genetics. 38: 1440-5. PMID 17099714 DOI: 10.1038/Ng1915  0.493
2006 Chi A, Valencia JC, Hu ZZ, Watabe H, Yamaguchi H, Mangini NJ, Huang H, Canfield VA, Cheng KC, Yang F, Abe R, Yamagishi S, Shabanowitz J, Hearing VJ, Wu C, et al. Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. Journal of Proteome Research. 5: 3135-44. PMID 17081065 DOI: 10.1021/Pr060363J  0.513
2006 Altrich-VanLith ML, Ostankovitch M, Polefrone JM, Mosse CA, Shabanowitz J, Hunt DF, Engelhard VH. Processing of a class I-restricted epitope from tyrosinase requires peptide N-glycanase and the cooperative action of endoplasmic reticulum aminopeptidase 1 and cytosolic proteases. Journal of Immunology (Baltimore, Md. : 1950). 177: 5440-50. PMID 17015730 DOI: 10.4049/Jimmunol.177.8.5440  0.525
2006 Zarling AL, Polefrone JM, Evans AM, Mikesh LM, Shabanowitz J, Lewis ST, Engelhard VH, Hunt DF. Identification of class I MHC-associated phosphopeptides as targets for cancer immunotherapy. Proceedings of the National Academy of Sciences of the United States of America. 103: 14889-94. PMID 17001009 DOI: 10.1073/pnas.0604045103  0.477
2006 Li Y, Kao GD, Garcia BA, Shabanowitz J, Hunt DF, Qin J, Phelan C, Lazar MA. A novel histone deacetylase pathway regulates mitosis by modulating Aurora B kinase activity. Genes & Development. 20: 2566-79. PMID 16980585 DOI: 10.1101/Gad.1455006  0.544
2006 Garcia BA, Platt MD, Born TL, Shabanowitz J, Marcus NA, Hunt DF. Protein profile of osteoarthritic human articular cartilage using tandem mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 20: 2999-3006. PMID 16969770 DOI: 10.1002/Rcm.2692  0.551
2006 Goldfinger LE, Ptak C, Jeffery ED, Shabanowitz J, Hunt DF, Ginsberg MH. RLIP76 (RalBP1) is an R-Ras effector that mediates adhesion-dependent Rac activation and cell migration. The Journal of Cell Biology. 174: 877-88. PMID 16966426 DOI: 10.1083/Jcb.200603111  0.45
2006 Klimowski LK, Garcia BA, Shabanowitz J, Hunt DF, Virshup DM. Site-specific casein kinase 1epsilon-dependent phosphorylation of Dishevelled modulates beta-catenin signaling. The Febs Journal. 273: 4594-602. PMID 16965538 DOI: 10.1111/J.1742-4658.2006.05462.X  0.503
2006 Fu Z, Larson KA, Chitta RK, Parker SA, Turk BE, Lawrence MW, Kaldis P, Galaktionov K, Cohn SM, Shabanowitz J, Hunt DF, Sturgill TW. Identification of yin-yang regulators and a phosphorylation consensus for male germ cell-associated kinase (MAK)-related kinase. Molecular and Cellular Biology. 26: 8639-54. PMID 16954377 DOI: 10.1128/Mcb.00816-06  0.519
2006 Mosoian A, Teixeira A, High AA, Christian RE, Hunt DF, Shabanowitz J, Liu X, Klotman M. Novel function of prothymosin alpha as a potent inhibitor of human immunodeficiency virus type 1 gene expression in primary macrophages. Journal of Virology. 80: 9200-6. PMID 16940531 DOI: 10.1128/Jvi.00589-06  0.487
2006 Garcia BA, Joshi S, Thomas CE, Chitta RK, Diaz RL, Busby SA, Andrews PC, Ogorzalek Loo RR, Shabanowitz J, Kelleher NL, Mizzen CA, Allis CD, Hunt DF. Comprehensive phosphoprotein analysis of linker histone H1 from Tetrahymena thermophila. Molecular & Cellular Proteomics : McP. 5: 1593-609. PMID 16835217 DOI: 10.1074/Mcp.M600086-Mcp200  0.554
2006 Martin KH, Jeffery ED, Grigera PR, Shabanowitz J, Hunt DF, Parsons JT. Cortactin phosphorylation sites mapped by mass spectrometry. Journal of Cell Science. 119: 2851-3. PMID 16825425 DOI: 10.1242/jcs03034  0.436
2006 Webb DJ, Mayhew MW, Kovalenko M, Schroeder MJ, Jeffery ED, Whitmore L, Shabanowitz J, Hunt DF, Horwitz AF. Identification of phosphorylation sites in GIT1. Journal of Cell Science. 119: 2847-50. PMID 16825424 DOI: 10.1242/Jcs03044  0.498
2006 Recht J, Tsubota T, Tanny JC, Diaz RL, Berger JM, Zhang X, Garcia BA, Shabanowitz J, Burlingame AL, Hunt DF, Kaufman PD, Allis CD. Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosis. Proceedings of the National Academy of Sciences of the United States of America. 103: 6988-93. PMID 16627621 DOI: 10.1073/Pnas.0601676103  0.494
2006 Li J, Riehle MM, Zhang Y, Xu J, Oduol F, Gomez SM, Eiglmeier K, Ueberheide BM, Shabanowitz J, Hunt DF, Ribeiro JM, Vernick KD. Anopheles gambiae genome reannotation through synthesis of ab initio and comparative gene prediction algorithms. Genome Biology. 7: R24. PMID 16569258 DOI: 10.1186/Gb-2006-7-3-R24  0.472
2006 Harris TE, Chi A, Shabanowitz J, Hunt DF, Rhoads RE, Lawrence JC. mTOR-dependent stimulation of the association of eIF4G and eIF3 by insulin. The Embo Journal. 25: 1659-68. PMID 16541103 DOI: 10.1038/Sj.Emboj.7601047  0.467
2006 Valencia JC, Watabe H, Chi A, Rouzaud F, Chen KG, Vieira WD, Takahashi K, Yamaguchi Y, Berens W, Nagashima K, Shabanowitz J, Hunt DF, Appella E, Hearing VJ. Sorting of Pmel17 to melanosomes through the plasma membrane by AP1 and AP2: evidence for the polarized nature of melanocytes. Journal of Cell Science. 119: 1080-91. PMID 16492709 DOI: 10.1242/Jcs.02804  0.469
2006 Brickner AG, Evans AM, Mito JK, Xuereb SM, Feng X, Nishida T, Fairfull L, Ferrell RE, Foon KA, Hunt DF, Shabanowitz J, Engelhard VH, Riddell SR, Warren EH. The PANE1 gene encodes a novel human minor histocompatibility antigen that is selectively expressed in B-lymphoid cells and B-CLL. Blood. 107: 3779-86. PMID 16391015 DOI: 10.1182/Blood-2005-08-3501  0.514
2006 Korochkina S, Barreau C, Pradel G, Jeffery E, Li J, Natarajan R, Shabanowitz J, Hunt D, Frevert U, Vernick KD. A mosquito-specific protein family includes candidate receptors for malaria sporozoite invasion of salivary glands. Cellular Microbiology. 8: 163-75. PMID 16367875 DOI: 10.1111/J.1462-5822.2005.00611.X  0.504
2006 Hake SB, Garcia BA, Duncan EM, Kauer M, Dellaire G, Shabanowitz J, Bazett-Jones DP, Allis CD, Hunt DF. Expression patterns and post-translational modifications associated with mammalian histone H3 variants. The Journal of Biological Chemistry. 281: 559-68. PMID 16267050 DOI: 10.1074/Jbc.M509266200  0.498
2005 Garcia BA, Busby SA, Shabanowitz J, Hunt DF, Mishra N. Resetting the epigenetic histone code in the MRL-lpr/lpr mouse model of lupus by histone deacetylase inhibition. Journal of Proteome Research. 4: 2032-42. PMID 16335948 DOI: 10.1021/Pr050188R  0.504
2005 Sibilio L, Martayan A, Setini A, Fraioli R, Fruci D, Shabanowitz J, Hunt DF, Giacomini P. Impaired assembly results in the accumulation of multiple HLA-C heavy chain folding intermediates. Journal of Immunology (Baltimore, Md. : 1950). 175: 6651-8. PMID 16272320 DOI: 10.4049/Jimmunol.175.10.6651  0.526
2005 Grigera PR, Jeffery ED, Martin KH, Shabanowitz J, Hunt DF, Parsons JT. FAK phosphorylation sites mapped by mass spectrometry. Journal of Cell Science. 118: 4931-5. PMID 16254240 DOI: 10.1242/Jcs.02696  0.503
2005 Webb DJ, Schroeder MJ, Brame CJ, Whitmore L, Shabanowitz J, Hunt DF, Horwitz AR. Paxillin phosphorylation sites mapped by mass spectrometry. Journal of Cell Science. 118: 4925-9. PMID 16254239 DOI: 10.1242/jcs.02563  0.436
2005 Ratnikov B, Ptak C, Han J, Shabanowitz J, Hunt DF, Ginsberg MH. Talin phosphorylation sites mapped by mass spectrometry. Journal of Cell Science. 118: 4921-3. PMID 16254238 DOI: 10.1242/jcs.02682  0.436
2005 Fischle W, Tseng BS, Dormann HL, Ueberheide BM, Garcia BA, Shabanowitz J, Hunt DF, Funabiki H, Allis CD. Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation. Nature. 438: 1116-22. PMID 16222246 DOI: 10.1038/Nature04219  0.545
2005 Schroeder MJ, Webb DJ, Shabanowitz J, Horwitz AF, Hunt DF. Methods for the detection of paxillin post-translational modifications and interacting proteins by mass spectrometry. Journal of Proteome Research. 4: 1832-41. PMID 16212439 DOI: 10.1021/Pr0502020  0.566
2005 Garcia BA, Smalley DM, Cho H, Shabanowitz J, Ley K, Hunt DF. The platelet microparticle proteome. Journal of Proteome Research. 4: 1516-21. PMID 16212402 DOI: 10.1021/Pr0500760  0.514
2005 Garcia BA, Barber CM, Hake SB, Ptak C, Turner FB, Busby SA, Shabanowitz J, Moran RG, Allis CD, Hunt DF. Modifications of human histone H3 variants during mitosis. Biochemistry. 44: 13202-13. PMID 16185088 DOI: 10.1021/Bi050906N  0.561
2005 Yang CH, Szeliga J, Jordan J, Faske S, Sever-Chroneos Z, Dorsett B, Christian RE, Settlage RE, Shabanowitz J, Hunt DF, Whitsett JA, Chroneos ZC. Identification of the surfactant protein A receptor 210 as the unconventional myosin 18A. The Journal of Biological Chemistry. 280: 34447-57. PMID 16087679 DOI: 10.1074/Jbc.M505229200  0.474
2005 Sweeney FD, Yang F, Chi A, Shabanowitz J, Hunt DF, Durocher D. Saccharomyces cerevisiae Rad9 acts as a Mec1 adaptor to allow Rad53 activation. Current Biology : Cb. 15: 1364-75. PMID 16085488 DOI: 10.1016/J.Cub.2005.06.063  0.502
2005 Fu Z, Schroeder MJ, Shabanowitz J, Kaldis P, Togawa K, Rustgi AK, Hunt DF, Sturgill TW. Activation of a nuclear Cdc2-related kinase within a mitogen-activated protein kinase-like TDY motif by autophosphorylation and cyclin-dependent protein kinase-activating kinase. Molecular and Cellular Biology. 25: 6047-64. PMID 15988018 DOI: 10.1128/Mcb.25.14.6047-6064.2005  0.498
2005 Coon JJ, Ueberheide B, Syka JE, Dryhurst DD, Ausio J, Shabanowitz J, Hunt DF. Protein identification using sequential ion/ion reactions and tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 102: 9463-8. PMID 15983376 DOI: 10.1073/Pnas.0503189102  0.485
2005 Coon JJ, Shabanowitz J, Hunt DF, Syka JE. Electron transfer dissociation of peptide anions. Journal of the American Society For Mass Spectrometry. 16: 880-2. PMID 15907703 DOI: 10.1016/J.Jasms.2005.01.015  0.473
2005 Hodges JL, Leslie JH, Mosammaparast N, Guo Y, Shabanowitz J, Hunt DF, Pemberton LF. Nuclear import of TFIIB is mediated by Kap114p, a karyopherin with multiple cargo-binding domains. Molecular Biology of the Cell. 16: 3200-10. PMID 15888545 DOI: 10.1091/Mbc.E04-11-0990  0.52
2005 Coon JJ, Syka JE, Shabanowitz J, Hunt DF. Tandem mass spectrometry for peptide and protein sequence analysis. Biotechniques. 38: 519, 521, 523. PMID 15884666 DOI: 10.2144/05384Te01  0.506
2005 Hake SB, Garcia BA, Kauer M, Baker SP, Shabanowitz J, Hunt DF, Allis CD. Serine 31 phosphorylation of histone variant H3.3 is specific to regions bordering centromeres in metaphase chromosomes. Proceedings of the National Academy of Sciences of the United States of America. 102: 6344-9. PMID 15851689 DOI: 10.1073/Pnas.0502413102  0.516
2005 Garcia BA, Shabanowitz J, Hunt DF. Analysis of protein phosphorylation by mass spectrometry. Methods (San Diego, Calif.). 35: 256-64. PMID 15722222 DOI: 10.1016/J.Ymeth.2004.08.017  0.521
2005 Yang CS, Vitto MJ, Busby SA, Garcia BA, Kesler CT, Gioeli D, Shabanowitz J, Hunt DF, Rundell K, Brautigan DL, Paschal BM. Simian virus 40 small t antigen mediates conformation-dependent transfer of protein phosphatase 2A onto the androgen receptor. Molecular and Cellular Biology. 25: 1298-308. PMID 15684382 DOI: 10.1128/Mcb.25.4.1298-1308.2005  0.519
2005 Angenstein F, Evans AM, Ling SC, Settlage RE, Ficarro S, Carrero-Martinez FA, Shabanowitz J, Hunt DF, Greenough WT. Proteomic characterization of messenger ribonucleoprotein complexes bound to nontranslated or translated poly(A) mRNAs in the rat cerebral cortex. The Journal of Biological Chemistry. 280: 6496-503. PMID 15596439 DOI: 10.1074/Jbc.M412742200  0.499
2005 Hogan KT, Sutton JN, Chu KU, Busby JA, Shabanowitz J, Hunt DF, Slingluff CL. Use of selected reaction monitoring mass spectrometry for the detection of specific MHC class I peptide antigens on A3 supertype family members. Cancer Immunology, Immunotherapy : Cii. 54: 359-71. PMID 15378283 DOI: 10.1007/S00262-004-0592-Y  0.541
2005 Hopkins L, Polefrone J, Zarling A, Evans A, Shabanowitz J, Hunt D, Engelhard V. Differential expression of HLA-A2 and HLA-B7 phosphorylated peptides on cancer and non-cancer cells: New candidates for immunotherapy Human Immunology. 66: 117. DOI: 10.1016/J.Humimm.2005.08.224  0.443
2004 Johnson L, Mollah S, Garcia BA, Muratore TL, Shabanowitz J, Hunt DF, Jacobsen SE. Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Research. 32: 6511-8. PMID 15598823 DOI: 10.1093/Nar/Gkh992  0.528
2004 Garcia BA, Busby SA, Barber CM, Shabanowitz J, Allis CD, Hunt DF. Characterization of phosphorylation sites on histone H1 isoforms by tandem mass spectrometry. Journal of Proteome Research. 3: 1219-27. PMID 15595731 DOI: 10.1021/Pr0498887  0.573
2004 Mi J, Qiao F, Wilson JB, High AA, Schroeder MJ, Stukenberg PT, Moss A, Shabanowitz J, Hunt DF, Jones NJ, Kupfer GM. FANCG is phosphorylated at serines 383 and 387 during mitosis. Molecular and Cellular Biology. 24: 8576-85. PMID 15367677 DOI: 10.1128/Mcb.24.19.8576-8585.2004  0.545
2004 Syka JE, Marto JA, Bai DL, Horning S, Senko MW, Schwartz JC, Ueberheide B, Garcia B, Busby S, Muratore T, Shabanowitz J, Hunt DF. Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications. Journal of Proteome Research. 3: 621-6. PMID 15253445 DOI: 10.1021/Pr0499794  0.549
2004 Schroeder MJ, Shabanowitz J, Schwartz JC, Hunt DF, Coon JJ. A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry. Analytical Chemistry. 76: 3590-8. PMID 15228329 DOI: 10.1021/Ac0497104  0.47
2004 Syka JE, Coon JJ, Schroeder MJ, Shabanowitz J, Hunt DF. Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 101: 9528-33. PMID 15210983 DOI: 10.1073/Pnas.0402700101  0.5
2004 Thomashevski A, High AA, Drozd M, Shabanowitz J, Hunt DF, Grant PA, Kupfer GM. The Fanconi anemia core complex forms four complexes of different sizes in different subcellular compartments. The Journal of Biological Chemistry. 279: 26201-9. PMID 15082718 DOI: 10.1074/jbc.M400091200  0.445
2004 Thompson LW, Hogan KT, Caldwell JA, Pierce RA, Hendrickson RC, Deacon DH, Settlage RE, Brinckerhoff LH, Engelhard VH, Shabanowitz J, Hunt DF, Slingluff CL. Preventing the spontaneous modification of an HLA-A2-restricted peptide at an N-terminal glutamine or an internal cysteine residue enhances peptide antigenicity. Journal of Immunotherapy (Hagerstown, Md. : 1997). 27: 177-83. PMID 15076134 DOI: 10.1097/00002371-200405000-00001  0.561
2004 Lan W, Zhang X, Kline-Smith SL, Rosasco SE, Barrett-Wilt GA, Shabanowitz J, Hunt DF, Walczak CE, Stukenberg PT. Aurora B phosphorylates centromeric MCAK and regulates its localization and microtubule depolymerization activity. Current Biology : Cb. 14: 273-86. PMID 14972678 DOI: 10.1016/J.Cub.2004.01.055  0.49
2004 Hogan KT, Coppola MA, Gatlin CL, Thompson LW, Shabanowitz J, Hunt DF, Engelhard VH, Ross MM, Slingluff CL. Identification of novel and widely expressed cancer/testis gene isoforms that elicit spontaneous cytotoxic T-lymphocyte reactivity to melanoma. Cancer Research. 64: 1157-63. PMID 14871852 DOI: 10.1158/0008-5472.Can-03-2209  0.515
2004 McCleland ML, Kallio MJ, Barrett-Wilt GA, Kestner CA, Shabanowitz J, Hunt DF, Gorbsky GJ, Stukenberg PT. The vertebrate Ndc80 complex contains Spc24 and Spc25 homologs, which are required to establish and maintain kinetochore-microtubule attachment. Current Biology : Cb. 14: 131-7. PMID 14738735 DOI: 10.1016/J.Cub.2003.12.058  0.495
2004 Chrestensen CA, Schroeder MJ, Shabanowitz J, Hunt DF, Pelo JW, Worthington MT, Sturgill TW. MAPKAP kinase 2 phosphorylates tristetraprolin on in vivo sites including Ser178, a site required for 14-3-3 binding. The Journal of Biological Chemistry. 279: 10176-84. PMID 14688255 DOI: 10.1074/Jbc.M310486200  0.515
2004 Brickner AG, Evans AM, Mito JK, Xuereb SM, Feng X, Hunt DF, Shabanowitz J, Engelhard VH, Riddell SR, Warren EH. The Immunogenicity of a Human Lymphoid Cell-Restricted Minor Histocompatibility Antigen Results from Differential Protein Translation. Blood. 104: 305-305. DOI: 10.1182/Blood.V104.11.305.305  0.544
2004 Coon JJ, Syka JEP, Schwartz JC, Shabanowitz J, Hunt DF. Anion dependence in the partitioning between proton and electron transfer in ion/ion reactions International Journal of Mass Spectrometry. 236: 33-42. DOI: 10.1016/J.Ijms.2004.05.005  0.441
2003 Rice JC, Briggs SD, Ueberheide B, Barber CM, Shabanowitz J, Hunt DF, Shinkai Y, Allis CD. Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains. Molecular Cell. 12: 1591-8. PMID 14690610 DOI: 10.1016/S1097-2765(03)00479-9  0.507
2003 Hogan KT, Coppola MA, Gatlin CL, Thompson LW, Shabanowitz J, Hunt DF, Engelhard VH, Slingluff CL, Ross MM. Identification of a shared epitope recognized by melanoma-specific, HLA-A3-restricted cytotoxic T lymphocytes. Immunology Letters. 90: 131-5. PMID 14687714 DOI: 10.1016/J.Imlet.2003.08.003  0.528
2003 Zarling AL, Luckey CJ, Marto JA, White FM, Brame CJ, Evans AM, Lehner PJ, Cresswell P, Shabanowitz J, Hunt DF, Engelhard VH. Tapasin is a facilitator, not an editor, of class I MHC peptide binding. Journal of Immunology (Baltimore, Md. : 1950). 171: 5287-95. PMID 14607930 DOI: 10.4049/Jimmunol.171.10.5287  0.538
2003 Corbin RW, Paliy O, Yang F, Shabanowitz J, Platt M, Lyons CE, Root K, McAuliffe J, Jordan MI, Kustu S, Soupene E, Hunt DF. Toward a protein profile of Escherichia coli: comparison to its transcription profile. Proceedings of the National Academy of Sciences of the United States of America. 100: 9232-7. PMID 12878731 DOI: 10.1073/Pnas.1533294100  0.522
2003 Lieberman SM, Evans AM, Han B, Takaki T, Vinnitskaya Y, Caldwell JA, Serreze DV, Shabanowitz J, Hunt DF, Nathenson SG, Santamaria P, DiLorenzo TP. Identification of the beta cell antigen targeted by a prevalent population of pathogenic CD8+ T cells in autoimmune diabetes. Proceedings of the National Academy of Sciences of the United States of America. 100: 8384-8. PMID 12815107 DOI: 10.1073/Pnas.0932778100  0.469
2003 Seamons A, Sutton J, Bai D, Baird E, Bonn N, Kafsack BF, Shabanowitz J, Hunt DF, Beeson C, Goverman J. Competition between two MHC binding registers in a single peptide processed from myelin basic protein influences tolerance and susceptibility to autoimmunity. The Journal of Experimental Medicine. 197: 1391-7. PMID 12756272 DOI: 10.1084/Jem.20022226  0.561
2003 Bandholtz L, Guo Y, Palmberg C, Mattsson K, Ohlsson B, High A, Shabanowitz J, Hunt DF, Jörnvall H, Wigzell H, Agerberth B, Gudmundsson GH. Hsp90 binds CpG oligonucleotides directly: implications for hsp90 as a missing link in CpG signaling and recognition. Cellular and Molecular Life Sciences : Cmls. 60: 422-9. PMID 12678505 DOI: 10.1007/S000180300035  0.486
2003 Spierings E, Brickner AG, Caldwell JA, Zegveld S, Tatsis N, Blokland E, Pool J, Pierce RA, Mollah S, Shabanowitz J, Eisenlohr LC, van Veelen P, Ossendorp F, Hunt DF, Goulmy E, et al. The minor histocompatibility antigen HA-3 arises from differential proteasome-mediated cleavage of the lymphoid blast crisis (Lbc) oncoprotein. Blood. 102: 621-9. PMID 12663445 DOI: 10.1182/Blood-2003-01-0260  0.55
2003 Basrur V, Yang F, Kushimoto T, Higashimoto Y, Yasumoto K, Valencia J, Muller J, Vieira WD, Watabe H, Shabanowitz J, Hearing VJ, Hunt DF, Appella E. Proteomic analysis of early melanosomes: identification of novel melanosomal proteins. Journal of Proteome Research. 2: 69-79. PMID 12643545 DOI: 10.1021/Pr025562R  0.524
2003 Ficarro S, Chertihin O, Westbrook VA, White F, Jayes F, Kalab P, Marto JA, Shabanowitz J, Herr JC, Hunt DF, Visconti PE. Phosphoproteome analysis of capacitated human sperm. Evidence of tyrosine phosphorylation of a kinase-anchoring protein 3 and valosin-containing protein/p97 during capacitation. The Journal of Biological Chemistry. 278: 11579-89. PMID 12509440 DOI: 10.1074/Jbc.M202325200  0.557
2002 Lippolis JD, White FM, Marto JA, Luckey CJ, Bullock TN, Shabanowitz J, Hunt DF, Engelhard VH. Analysis of MHC class II antigen processing by quantitation of peptides that constitute nested sets. Journal of Immunology (Baltimore, Md. : 1950). 169: 5089-97. PMID 12391225 DOI: 10.4049/Jimmunol.169.9.5089  0.547
2002 Angenstein F, Evans AM, Settlage RE, Moran ST, Ling SC, Klintsova AY, Shabanowitz J, Hunt DF, Greenough WT. A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 22: 8827-37. PMID 12388589 DOI: 10.1523/Jneurosci.22-20-08827.2002  0.493
2002 Briggs SD, Xiao T, Sun ZW, Caldwell JA, Shabanowitz J, Hunt DF, Allis CD, Strahl BD. Gene silencing: trans-histone regulatory pathway in chromatin. Nature. 418: 498. PMID 12152067 DOI: 10.1038/Nature00970  0.512
2002 Dragon F, Gallagher JE, Compagnone-Post PA, Mitchell BM, Porwancher KA, Wehner KA, Wormsley S, Settlage RE, Shabanowitz J, Osheim Y, Beyer AL, Hunt DF, Baserga SJ. A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature. 417: 967-70. PMID 12068309 DOI: 10.1038/Nature00769  0.494
2002 Gioeli D, Ficarro SB, Kwiek JJ, Aaronson D, Hancock M, Catling AD, White FM, Christian RE, Settlage RE, Shabanowitz J, Hunt DF, Weber MJ. Androgen receptor phosphorylation. Regulation and identification of the phosphorylation sites. The Journal of Biological Chemistry. 277: 29304-14. PMID 12015328 DOI: 10.1074/Jbc.M204131200  0.516
2002 Flyer DC, Ramakrishna V, Miller C, Myers H, McDaniel M, Root K, Flournoy C, Engelhard VH, Canaday DH, Marto JA, Ross MM, Hunt DF, Shabanowitz J, White FM. Identification by mass spectrometry of CD8(+)-T-cell Mycobacterium tuberculosis epitopes within the Rv0341 gene product. Infection and Immunity. 70: 2926-32. PMID 12010981 DOI: 10.1128/Iai.70.6.2926-2932.2002  0.476
2002 Ficarro SB, McCleland ML, Stukenberg PT, Burke DJ, Ross MM, Shabanowitz J, Hunt DF, White FM. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nature Biotechnology. 20: 301-5. PMID 11875433 DOI: 10.1038/Nbt0302-301  0.586
2002 Strahl BD, Grant PA, Briggs SD, Sun ZW, Bone JR, Caldwell JA, Mollah S, Cook RG, Shabanowitz J, Hunt DF, Allis CD. Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression. Molecular and Cellular Biology. 22: 1298-306. PMID 11839797 DOI: 10.1128/Mcb.22.5.1298-1306.2002  0.503
2002 Mosammaparast N, Guo Y, Shabanowitz J, Hunt DF, Pemberton LF. Pathways mediating the nuclear import of histones H3 and H4 in yeast. The Journal of Biological Chemistry. 277: 862-8. PMID 11694505 DOI: 10.1074/Jbc.M106845200  0.501
2001 Kao H, Marto JA, Hoffmann TK, Shabanowitz J, Finkelstein SD, Whiteside TL, Hunt DF, Finn OJ. Identification of cyclin B1 as a shared human epithelial tumor-associated antigen recognized by T cells. The Journal of Experimental Medicine. 194: 1313-23. PMID 11696596 DOI: 10.1084/Jem.194.9.1313  0.548
2001 Harnpicharnchai P, Jakovljevic J, Horsey E, Miles T, Roman J, Rout M, Meagher D, Imai B, Guo Y, Brame CJ, Shabanowitz J, Hunt DF, Woolford JL. Composition and functional characterization of yeast 66S ribosome assembly intermediates. Molecular Cell. 8: 505-15. PMID 11583614 DOI: 10.1016/S1097-2765(01)00344-6  0.523
2001 Pierce RA, Field ED, Mutis T, Golovina TN, Von Kap-Herr C, Wilke M, Pool J, Shabanowitz J, Pettenati MJ, Eisenlohr LC, Hunt DF, Goulmy E, Engelhard VH. The HA-2 minor histocompatibility antigen is derived from a diallelic gene encoding a novel human class I myosin protein. Journal of Immunology (Baltimore, Md. : 1950). 167: 3223-30. PMID 11544309 DOI: 10.4049/Jimmunol.167.6.3223  0.49
2001 Luckey CJ, Marto JA, Partridge M, Hall E, White FM, Lippolis JD, Shabanowitz J, Hunt DF, Engelhard VH. Differences in the expression of human class I MHC alleles and their associated peptides in the presence of proteasome inhibitors. Journal of Immunology (Baltimore, Md. : 1950). 167: 1212-21. PMID 11466336 DOI: 10.4049/Jimmunol.167.3.1212  0.545
2001 Strahl BD, Briggs SD, Brame CJ, Caldwell JA, Koh SS, Ma H, Cook RG, Shabanowitz J, Hunt DF, Stallcup MR, Allis CD. Methylation of histone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1. Current Biology : Cb. 11: 996-1000. PMID 11448779 DOI: 10.1016/S0960-9822(01)00294-9  0.528
2001 Mosammaparast N, Jackson KR, Guo Y, Brame CJ, Shabanowitz J, Hunt DF, Pemberton LF. Nuclear import of histone H2A and H2B is mediated by a network of karyopherins. The Journal of Cell Biology. 153: 251-62. PMID 11309407 DOI: 10.1083/Jcb.153.2.251  0.509
2001 Guimezanes A, Barrett-Wilt GA, Gulden-Thompson P, Shabanowitz J, Engelhard VH, Hunt DF, Schmitt-Verhulst AM, Engelhardt VH. Identification of endogenous peptides recognized by in vivo or in vitro generated alloreactive cytotoxic T lymphocytes: distinct characteristics correlated with CD8 dependence. European Journal of Immunology. 31: 421-32. PMID 11180106 DOI: 10.1002/1521-4141(200102)31:2<421::Aid-Immu421>3.0.Co;2-4  0.514
2001 Nepom GT, Lippolis JD, White FM, Masewicz S, Marto JA, Herman A, Luckey CJ, Falk B, Shabanowitz J, Hunt DF, Engelhard VH, Nepom BS. Identification and modulation of a naturally processed T cell epitope from the diabetes-associated autoantigen human glutamic acid decarboxylase 65 (hGAD65). Proceedings of the National Academy of Sciences of the United States of America. 98: 1763-8. PMID 11172025 DOI: 10.1073/Pnas.98.4.1763  0.519
2001 Brickner AG, Warren EH, Caldwell JA, Akatsuka Y, Golovina TN, Zarling AL, Shabanowitz J, Eisenlohr LC, Hunt DF, Engelhard VH, Riddell SR. The immunogenicity of a new human minor histocompatibility antigen results from differential antigen processing. The Journal of Experimental Medicine. 193: 195-206. PMID 11148223 DOI: 10.1084/Jem.193.2.195  0.537
2000 Zarling AL, Ficarro SB, White FM, Shabanowitz J, Hunt DF, Engelhard VH. Phosphorylated peptides are naturally processed and presented by major histocompatibility complex class I molecules in vivo. The Journal of Experimental Medicine. 192: 1755-62. PMID 11120772 DOI: 10.1084/Jem.192.12.1755  0.562
2000 Pestic-Dragovich L, Stojiljkovic L, Philimonenko AA, Nowak G, Ke Y, Settlage RE, Shabanowitz J, Hunt DF, Hozak P, de Lanerolle P. A myosin I isoform in the nucleus. Science (New York, N.Y.). 290: 337-41. PMID 11030652 DOI: 10.1126/science.290.5490.337  0.411
2000 Martin SE, Shabanowitz J, Hunt DF, Marto JA. Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 72: 4266-74. PMID 11008759 DOI: 10.1021/Ac000497V  0.571
2000 Lim KB, Walker CR, Guo L, Pellett S, Shabanowitz J, Hunt DF, Hewlett EL, Ludwig A, Goebel W, Welch RA, Hackett M. Escherichia coli alpha-hemolysin (HlyA) is heterogeneously acylated in vivo with 14-, 15-, and 17-carbon fatty acids. The Journal of Biological Chemistry. 275: 36698-702. PMID 10978310 DOI: 10.1074/Jbc.C000544200  0.517
2000 Crotzer VL, Christian RE, Brooks JM, Shabanowitz J, Settlage RE, Marto JA, White FM, Rickinson AB, Hunt DF, Engelhard VH. Immunodominance among EBV-derived epitopes restricted by HLA-B27 does not correlate with epitope abundance in EBV-transformed B-lymphoblastoid cell lines. Journal of Immunology (Baltimore, Md. : 1950). 164: 6120-9. PMID 10843661 DOI: 10.4049/Jimmunol.164.12.6120  0.529
2000 Celli S, Marto JA, Falchetto R, Shabanowitz J, Valdivia LA, Fung JJ, Hunt DF, Kelly RH. Serum protein immunogenicity: implications for liver xenografting. Electrophoresis. 21: 965-75. PMID 10768783 DOI: 10.1002/(Sici)1522-2683(20000301)21:5<965::Aid-Elps965>3.0.Co;2-D  0.485
1999 Skipper JC, Gulden PH, Hendrickson RC, Harthun N, Caldwell JA, Shabanowitz J, Engelhard VH, Hunt DF, Slingluff CL. Mass-spectrometric evaluation of HLA-A*0201-associated peptides identifies dominant naturally processed forms of CTL epitopes from MART-1 and gp100. International Journal of Cancer. Journal International Du Cancer. 82: 669-77. PMID 10417764 DOI: 10.1002/(SICI)1097-0215(19990827)82:5<669::AID-IJC9>3.0.CO;2-#  0.543
1999 Osterlund T, Beussman DJ, Julenius K, Poon PH, Linse S, Shabanowitz J, Hunt DF, Schotz MC, Derewenda ZS, Holm C. Domain identification of hormone-sensitive lipase by circular dichroism and fluorescence spectroscopy, limited proteolysis, and mass spectrometry. The Journal of Biological Chemistry. 274: 15382-8. PMID 10336425 DOI: 10.1074/jbc.274.22.15382  0.426
1999 Furuya K, Hackett M, Cirelli MA, Schegg KM, Wang H, Shabanowitz J, Hunt DF, Schooley DA. A cardioactive peptide from the southern armyworm, Spodoptera eridania. Peptides. 20: 53-61. PMID 10098624 DOI: 10.1016/S0196-9781(98)00148-X  0.531
1999 Pieper R, Christian RE, Gonzales MI, Nishimura MI, Gupta G, Settlage RE, Shabanowitz J, Rosenberg SA, Hunt DF, Topalian SL. Biochemical identification of a mutated human melanoma antigen recognized by CD4(+) T cells. The Journal of Experimental Medicine. 189: 757-66. PMID 10049939 DOI: 10.1084/Jem.189.5.757  0.523
1998 den Haan JM, Meadows LM, Wang W, Pool J, Blokland E, Bishop TL, Reinhardus C, Shabanowitz J, Offringa R, Hunt DF, Engelhard VH, Goulmy E. The minor histocompatibility antigen HA-1: a diallelic gene with a single amino acid polymorphism. Science (New York, N.Y.). 279: 1054-7. PMID 9461441 DOI: 10.1126/Science.279.5353.1054  0.402
1998 Mosse CA, Meadows L, Luckey CJ, Kittlesen DJ, Huczko EL, Slingluff CL, Shabanowitz J, Hunt DF, Engelhard VH. The class I antigen-processing pathway for the membrane protein tyrosinase involves translation in the endoplasmic reticulum and processing in the cytosol. The Journal of Experimental Medicine. 187: 37-48. PMID 9419209 DOI: 10.1084/Jem.187.1.37  0.546
1998 Settlage RE, Russo PS, Shabanowitz J, Hunt DF. A novel μ-ESI source for coupling capillary electrophoresis and mass spectrometry: Sequence determination of tumor peptides at the attomole level Journal of Microcolumn Separations. 10: 281-285. DOI: 10.1002/(Sici)1520-667X(1998)10:3<281::Aid-Mcs7>3.0.Co;2-C  0.539
1997 Revett SP, King G, Shabanowitz J, Hunt DF, Hartman KL, Laue TM, Nelson DJ. Characterization of a helix-loop-helix (EF hand) motif of silver hake parvalbumin isoform B. Protein Science : a Publication of the Protein Society. 6: 2397-408. PMID 9385642 DOI: 10.1002/Pro.5560061113  0.527
1997 Hu Q, Bazemore Walker CR, Girao C, Opferman JT, Sun J, Shabanowitz J, Hunt DF, Ashton-Rickardt PG. Specific recognition of thymic self-peptides induces the positive selection of cytotoxic T lymphocytes. Immunity. 7: 221-31. PMID 9285407 DOI: 10.1016/S1074-7613(00)80525-7  0.448
1997 Polanowska-Grabowska R, Simon CG, Falchetto R, Shabanowitz J, Hunt DF, Gear AR. Platelet adhesion to collagen under flow causes dissociation of a phosphoprotein complex of heat-shock proteins and protein phosphatase 1. Blood. 90: 1516-26. PMID 9269769 DOI: 10.1182/Blood.V90.4.1516.1516_1516_1526  0.48
1997 Hungerford JE, Hoeffler JP, Bowers CW, Dahm LM, Falchetto R, Shabanowitz J, Hunt DF, Little CD. Identification of a novel marker for primordial smooth muscle and its differential expression pattern in contractile vs noncontractile cells. The Journal of Cell Biology. 137: 925-37. PMID 9151694 DOI: 10.1083/Jcb.137.4.925  0.407
1997 Laney EL, Shabanowitz J, King G, Hunt DF, Nelson DJ. The isolation of parvalbumin isoforms from the tail muscle of the American alligator (Alligator mississipiensis). Journal of Inorganic Biochemistry. 66: 67-76. PMID 9076974 DOI: 10.1016/S0162-0134(96)00187-0  0.524
1997 Meadows L, Wang W, den Haan JM, Blokland E, Reinhardus C, Drijfhout JW, Shabanowitz J, Pierce R, Agulnik AI, Bishop CE, Hunt DF, Goulmy E, Engelhard VH. The HLA-A*0201-restricted H-Y antigen contains a posttranslationally modified cysteine that significantly affects T cell recognition. Immunity. 6: 273-81. PMID 9075928 DOI: 10.1016/S1074-7613(00)80330-1  0.564
1997 Fiorillo MT, Meadows L, D'Amato M, Shabanowitz J, Hunt DF, Appella E, Sorrentino R. Susceptibility to ankylosing spondylitis correlates with the C-terminal residue of peptides presented by various HLA-B27 subtypes. European Journal of Immunology. 27: 368-73. PMID 9045906 DOI: 10.1002/Eji.1830270205  0.513
1997 Dubey P, Hendrickson RC, Meredith SC, Siegel CT, Shabanowitz J, Skipper JC, Engelhard VH, Hunt DF, Schreiber H. The immunodominant antigen of an ultraviolet-induced regressor tumor is generated by a somatic point mutation in the DEAD box helicase p68. The Journal of Experimental Medicine. 185: 695-705. PMID 9034148 DOI: 10.1084/Jem.185.4.695  0.536
1996 Hunt JG, Kasinsky HE, Elsey RM, Wright CL, Rice P, Bell JE, Sharp DJ, Kiss AJ, Hunt DF, Arnott DP, Russ MM, Shabanowitz J, Ausió J. Protamines of reptiles. The Journal of Biological Chemistry. 271: 23547-57. PMID 8798564 DOI: 10.1074/Jbc.271.38.23547  0.459
1996 Gulden PH, Fischer P, Sherman NE, Wang W, Engelhard VH, Shabanowitz J, Hunt DF, Pamer EG. A Listeria monocytogenes pentapeptide is presented to cytolytic T lymphocytes by the H2-M3 MHC class Ib molecule. Immunity. 5: 73-9. PMID 8758896 DOI: 10.1016/S1074-7613(00)80311-8  0.522
1996 Janssen I, Schoofs L, Spittaels K, Neven H, Vanden Broeck J, Devreese B, Van Beeumen J, Shabanowitz J, Hunt DF, De Loof A. Isolation of NEB-LFamide, a novel myotropic neuropeptide from the grey fleshfly. Molecular and Cellular Endocrinology. 117: 157-65. PMID 8737375 DOI: 10.1016/0303-7207(95)03746-2  0.547
1996 Aguilar MB, Falchetto R, Shabanowitz J, Hunt DF, Huberman A. Complete primary structure of the molt-inhibiting hormone (MIH) of the Mexican crayfish Procambarus bouvieri (Ortmann). Peptides. 17: 367-74. PMID 8735961 DOI: 10.1016/0196-9781(96)00010-1  0.549
1996 Niedermann G, King G, Butz S, Birsner U, Grimm R, Shabanowitz J, Hunt DF, Eichmann K. The proteolytic fragments generated by vertebrate proteasomes: structural relationships to major histocompatibility complex class I binding peptides. Proceedings of the National Academy of Sciences of the United States of America. 93: 8572-7. PMID 8710912 DOI: 10.1073/Pnas.93.16.8572  0.567
1996 di Marzo Veronese F, Arnott D, Barnaba V, Loftus DJ, Sakaguchi K, Thompson CB, Salemi S, Mastroianni C, Sette A, Shabanowitz J, Hunt DF, Appella E. Autoreactive cytotoxic T lymphocytes in human immunodeficiency virus type 1-infected subjects. The Journal of Experimental Medicine. 183: 2509-16. PMID 8676071 DOI: 10.1084/Jem.183.6.2509  0.456
1996 Skipper JC, Hendrickson RC, Gulden PH, Brichard V, Van Pel A, Chen Y, Shabanowitz J, Wolfel T, Slingluff CL, Boon T, Hunt DF, Engelhard VH. An HLA-A2-restricted tyrosinase antigen on melanoma cells results from posttranslational modification and suggests a novel pathway for processing of membrane proteins. The Journal of Experimental Medicine. 183: 527-34. PMID 8627164 DOI: 10.1084/Jem.183.2.527  0.508
1996 Lin HB, Falchetto R, Mosca PJ, Shabanowitz J, Hunt DF, Hamlin JL. Mimosine targets serine hydroxymethyltransferase. The Journal of Biological Chemistry. 271: 2548-56. PMID 8576220 DOI: 10.1074/Jbc.271.5.2548  0.523
1995 Aguilar MB, Soyez D, Falchetto R, Arnott D, Shabanowitz J, Hunt DF, Huberman A. Amino acid sequence of the minor isomorph of the crustacean hyperglycemic hormone (CHH-II) of the Mexican crayfish Procambarus bouvieri (Ortmann): presence of a D-amino acid. Peptides. 16: 1375-83. PMID 8745046 DOI: 10.1016/0196-9781(95)02024-1  0.534
1995 Kingan TG, Bodnar WM, Raina AK, Shabanowitz J, Hunt DF. The loss of female sex pheromone after mating in the corn earworm moth Helicoverpa zea: identification of a male pheromonostatic peptide. Proceedings of the National Academy of Sciences of the United States of America. 92: 5082-6. PMID 7761452 DOI: 10.1073/Pnas.92.11.5082  0.489
1995 Duda RL, Hempel J, Michel H, Shabanowitz J, Hunt D, Hendrix RW. Structural transitions during bacteriophage HK97 head assembly Journal of Molecular Biology. 247: 618-635. PMID 7723019 DOI: 10.1016/S0022-2836(05)80143-3  0.53
1995 Spittaels K, Vankeerberghen A, Torrekens S, Devreese B, Grauwels L, Van Leuven F, Hunt D, Shabanowitz J, Schoofs L, Van Beeumen J. Isolation of Ala1-proctolin, the first natural analogue of proctolin, from the brain of the Colorado potato beetle. Molecular and Cellular Endocrinology. 110: 119-24. PMID 7672442 DOI: 10.1016/0303-7207(95)03527-E  0.518
1995 Wang W, Meadows LR, den Haan JM, Sherman NE, Chen Y, Blokland E, Shabanowitz J, Agulnik AI, Hendrickson RC, Bishop CE. Human H-Y: a male-specific histocompatibility antigen derived from the SMCY protein. Science (New York, N.Y.). 269: 1588-90. PMID 7667640 DOI: 10.1126/Science.7667640  0.323
1995 Hackett M, Walker CB, Guo L, Gray MC, Van Cuyk S, Ullmann A, Shabanowitz J, Hunt DF, Hewlett EL, Sebo P. Hemolytic, but not cell-invasive activity, of adenylate cyclase toxin is selectively affected by differential fatty-acylation in Escherichia coli. The Journal of Biological Chemistry. 270: 20250-3. PMID 7657593 DOI: 10.1074/Jbc.270.35.20250  0.497
1995 Hjelmqvist L, Hackett M, Shafqat J, Danielsson O, Iida J, Hendrickson RC, Michel H, Shabanowitz J, Hunt DF, Jörnvall H. Multiplicity of N-terminal structures of medium-chain alcohol dehydrogenases. Mass-spectrometric analysis of plant, lower vertebrate and higher vertebrate class I, II, and III forms of the enzyme. Febs Letters. 367: 237-40. PMID 7607314 DOI: 10.1016/0014-5793(95)00572-Q  0.501
1995 Aziz N, Miglarese MR, Hendrickson RC, Shabanowitz J, Sturgill TW, Hunt DF, Bender TP. Modulation of c-Myb-induced transcription activation by a phosphorylation site near the negative regulatory domain. Proceedings of the National Academy of Sciences of the United States of America. 92: 6429-33. PMID 7604007 DOI: 10.1073/Pnas.92.14.6429  0.532
1995 Den Haan JMM, Sherman NE, Blokland E, Huczko E, Koning F, Drijfhout JW, Skipper J, Shabanowitz J, Hunt DF, Engelhard VH, Goulmy E. Identification of a graft versus host disease-associated human minor histocompatibility antigen Science. 268: 1476-1480. PMID 7539551 DOI: 10.1126/Science.7539551  0.422
1995 Blackburn MB, Wagner RM, Shabanowitz J, Kochansky JP, Hunt DF, Raina AK. The isolation and identification of three diuretic kinins from the abdominal ventral nerve cord of adult Helicoverpa zea Journal of Insect Physiology. 41: 723-730. DOI: 10.1016/0022-1910(95)00005-F  0.504
1994 Bylemans D, Borovsky D, Hunt DF, Shabanowitz J, Grauwels L, De Loof A. Sequencing and characterization of trypsin modulating oostatic factor (TMOF) from the ovaries of the grey fleshfly, Neobellieria (Sarcophaga) bullata Regulatory Peptides. 50: 61-72. PMID 8159807 DOI: 10.1016/0167-0115(94)90192-9  0.479
1994 Hackett M, Guo L, Shabanowitz J, Hunt DF, Hewlett EL. Internal lysine palmitoylation in adenylate cyclase toxin from Bordetella pertussis Science. 266: 433-435. PMID 7939682 DOI: 10.1126/Science.7939682  0.561
1994 Kaiser II, Griffin PR, Aird SD, Hudiburg S, Shabanowitz J, Francis B, John TR, Hunt DF, Odell GV. Primary structures of two proteins from the venom of the Mexican red knee tarantula (Brachypelma smithii). Toxicon : Official Journal of the International Society On Toxinology. 32: 1083-93. PMID 7801344 DOI: 10.1016/0041-0101(94)90392-1  0.465
1994 Cox AL, Skipper J, Chen Y, Henderson RA, Darrow TL, Shabanowitz J, Engelhard VH, Hunt DF, Slingluff CL. Identification of a peptide recognized by five melanoma-specific human cytotoxic T cell lines Science. 264: 716-719. PMID 7513441 DOI: 10.1126/Science.7513441  0.549
1994 Taylor SW, Waite JH, Ross MM, Shabanowitz J, Hunt DF. Trans-2,3-cis-3,4-dihydroxyproline, a new naturally occurring amino acid, is the sixth residue in the tandemly repeated consensus decapeptides of an adhesive protein from Mytilus edulis Journal of the American Chemical Society. 116: 10803-10804. DOI: 10.1021/Ja00102A063  0.486
1993 Pote KG, Hauer CR, Michel H, Shabanowitz J, Hunt DF, Kretsinger RH. Otoconin-22, the major protein of aragonitic frog otoconia, is a homolog of phospholipase A2. Biochemistry. 32: 5017-24. PMID 8494877 DOI: 10.1021/Bi00070A007  0.51
1993 Huberman A, Aguilar MB, Brew K, Shabanowitz J, Hunt DF. Primary structure of the major isomorph of the crustacean hyperglycemic hormone (CHH-I) from the sinus gland of the Mexican crayfish Procambarus bouvieri (Ortmann): interspecies comparison. Peptides. 14: 7-16. PMID 8441709 DOI: 10.1016/0196-9781(93)90004-Z  0.548
1993 Borovsky D, Carlson DA, Griffin PR, Shabanowitz J, Hunt DF. Mass spectrometry and characterization of Aedes aegypti trypsin modulating oostatic factor (TMOF) and its analogs. Insect Biochemistry and Molecular Biology. 23: 703-12. PMID 8353526 DOI: 10.1016/0965-1748(93)90044-S  0.481
1993 Henderson RA, Cox AL, Sakaguchi K, Appella E, Shabanowitz J, Hunt DF, Engelhard VH. Direct identification of an endogenous peptide recognized by multiple HLA-A2.1-specific cytotoxic T cells Proceedings of the National Academy of Sciences of the United States of America. 90: 10275-10279. PMID 7694286 DOI: 10.1073/Pnas.90.21.10275  0.559
1993 Witty M, Wallace-Cook AD, Albrecht H, Spano AJ, Michel H, Shabanowitz J, Hunt DF, Timko MP, Smith AG. Structure and expression of chloroplast-localized porphobilinogen deaminase from pea (Pisum sativum L.) isolated by redundant polymerase chain reaction. Plant Physiology. 103: 139-47. PMID 7516080 DOI: 10.1104/Pp.103.1.139  0.453
1993 Arnott D, Shabanowitz J, Hunt DF. Mass spectrometry of proteins and peptides: sensitive and accurate mass measurement and sequence analysis Clinical Chemistry. 39: 2005-2010. DOI: 10.1093/Clinchem/39.9.2005  0.51
1992 Moseley MA, Jorgenson JW, Shabanowitz J, Hunt DF, Tomer KB. Optimization of capillary zone electrophoresis/electrospray ionization parameters for the mass spectrometry and tandem mass spectrometry analysis of peptides. Journal of the American Society For Mass Spectrometry. 3: 289-300. PMID 24243039 DOI: 10.1016/1044-0305(92)87056-5  0.545
1992 Hunt DF, Zhu NZ, Shabanowitz J. Oligopeptide sequence analysis by collision-activated dissociation of multiply charged ions. Rapid Communications in Mass Spectrometry : Rcm. 3: 122-4. PMID 2520232 DOI: 10.1002/Rcm.1290030408  0.56
1992 Henderson RA, Michel H, Sakaguchi K, Shabanowitz J, Appella E, Hunt DF, Engelhard VH. HLA-A2.1-associated peptides from a mutant cell line: A second pathway of antigen presentation Science. 255: 1264-1266. PMID 1546329 DOI: 10.1126/Science.1546329  0.553
1992 Hunt DF, Henderson RA, Shabanowitz J, Sakaguchi K, Michel H, Sevilir N, Cox AL, Appella E, Engelhard VH. Characterization of peptides bound to the class I MHC molecule HLA-A2.1 by mass spectrometry Science. 255: 1261-1263. PMID 1546328 DOI: 10.1126/Science.1546328  0.574
1992 Sette A, Ceman S, Kubo RT, Sakaguchi K, Appella E, Hunt DF, Davis TA, Michel H, Shabanowitz J, Rudersdorf R, Grey HM, DeMars R. Invariant chain peptides in most HLA-DR molecules of an antigen-processing mutant Science. 258: 1801-1804. PMID 1465617 DOI: 10.1126/Science.1465617  0.472
1992 Rossomando AJ, Wu J, Michel H, Shabanowitz J, Hunt DF, Weber MJ, Sturgill TW. Identification of Tyr-185 as the site of tyrosine autophosphorylation of recombinant mitogen-activated protein kinase p42mapk Proceedings of the National Academy of Sciences of the United States of America. 89: 5779-5783. PMID 1378617 DOI: 10.1073/Pnas.89.13.5779  0.527
1992 Hegyi G, Michel H, Shabanowitz J, Hunt DF, Chatterjie N, Healy-Louie G, Elzinga M. Gln-41 is intermolecularly cross-linked to Lys-113 in F-actin by N-(4- azidobenzoyl)-putrescine Protein Science. 1: 132-144. PMID 1363931 DOI: 10.1002/Pro.5560010113  0.435
1992 Hunt DF, Michel H, Dickinson TA, Shabanowitz J, Cox AL, Sakaguchi K, Appella E, Grey HM, Sette A. Peptides presented to the immune system by the murine class II major histocompatibility complex molecule I-Ad. Science (New York, N.Y.). 256: 1817-20. PMID 1319610 DOI: 10.1126/Science.1319610  0.554
1992 Aguilar MB, Quackenbush LS, Hunt DT, Shabanowitz J, Huberman A. Identification, purification and initial characterization of the vitellogenesis-inhibiting hormone from the Mexican crayfish Procambarus bouvieri (Ortmann) Comparative Biochemistry and Physiology -- Part B: Biochemistry And. 102: 491-498. DOI: 10.1016/0305-0491(92)90039-T  0.359
1992 Hunt DF, Shabanowitz J, Michel H, Cox AL, Dickinson T, Davis T, Bodnar W, Henderson RA, Sevilir N, Engelhard VH, Sakaguchi K, Appella E, Grey HM, Sette A. Sequence analysis of peptides presented to the immune system by class I and class II MHC molecules Journal of Protein Chemistry. 11: 377-378. DOI: 10.1007/Bf01673734  0.535
1991 Alexander JE, Hunt DF, Lee MK, Shabanowitz J, Michel H, Berlin SC, MacDonald TL, Sundberg RJ, Rebhun LI, Frankfurter A. Characterization of posttranslational modifications in neuron-specific class III beta-tubulin by mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 88: 4685-9. PMID 2052551 DOI: 10.1073/Pnas.88.11.4685  0.543
1991 Pratt GE, Farnsworth DE, Fok KF, Siegel NR, McCormack AL, Shabanowitz J, Hunt DF, Feyereisen R. Identity of a second type of allatostatin from cockroach brains: an octadecapeptide amide with a tyrosine-rich address sequence. Proceedings of the National Academy of Sciences of the United States of America. 88: 2412-6. PMID 2006179 DOI: 10.1073/pnas.88.6.2412  0.46
1991 Blackburn MB, Kingan TG, Bodnar W, Shabanowitz J, Hunt DF, Kempe T, Wagner RM, Raina AK, Schnee ME, Ma MC. Isolation and identification of a new diuretic peptide from the tobacco hornworm, Manduca sexta. Biochemical and Biophysical Research Communications. 181: 927-32. PMID 1764106 DOI: 10.1016/0006-291X(91)92025-F  0.548
1991 Charbonneau H, Kumar S, Novack JP, Blumenthal DK, Griffin PR, Shabanowitz J, Hunt DF, Beavo JA, Walsh KA. Evidence for domain organization within the 61-kDa calmodulin-dependent cyclic nucleotide phosphodiesterase from bovine brain. Biochemistry. 30: 7931-40. PMID 1651111 DOI: 10.1021/Bi00246A009  0.47
1991 Payne DM, Rossomando AJ, Martino P, Erickson AK, Her JH, Shabanowitz J, Hunt DF, Weber MJ, Sturgill TW. Identification of the regulatory phosphorylation sites in pp42/mitogen-activated protein kinase (MAP kinase). The Embo Journal. 10: 885-892. DOI: 10.1002/J.1460-2075.1991.Tb08021.X  0.491
1990 Williams ER, Henry KD, McLafferty FW, Shabanowitz J, Hunt DF. Surface-induced dissociation of peptide ions in Fourier-transform mass spectrometry. Journal of the American Society For Mass Spectrometry. 1: 413-6. PMID 24248904 DOI: 10.1016/1044-0305(90)85022-E  0.512
1990 Aird SD, Yates JR, Martino PA, Shabanowitz J, Hunt DF, Kaiser II. The amino acid sequence of the acidic subunit B-chain of crotoxin. Biochimica Et Biophysica Acta. 1040: 217-24. PMID 2400773 DOI: 10.1016/0167-4838(90)90079-U  0.424
1990 Borovsky D, Carlson DA, Griffin PR, Shabanowitz J, Hunt DF. Mosquito oostatic factor: a novel decapeptide modulating trypsin-like enzyme biosynthesis in the midgut. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 4: 3015-20. PMID 2394318 DOI: 10.1096/Fasebj.4.12.2394318  0.469
1990 Takemoto LJ, Emmons T, Granstrom D, Griffin PR, Shabanowitz J, Hunt DF. Analysis of tryptic peptides from the C-terminal region of alpha-crystallin from cataractous and normal human lenses. Experimental Eye Research. 50: 695-702. PMID 2373163 DOI: 10.1016/0014-4835(90)90116-C  0.499
1990 Groome JR, Tillinghast EK, Townley MA, Vetrovs A, Watson WH, Hunt DF, Griffin PR, Alexander JE, Shabanowitz J. Identification of proctolin in the central nervous system of the horseshoe crab, Limulus polyphemus. Peptides. 11: 205-11. PMID 2356151 DOI: 10.1016/0196-9781(90)90072-D  0.501
1990 Bieber AL, Becker RR, McParland R, Hunt DF, Shabanowitz J, Yates JR, Martino PA, Johnson GR. The complete sequence of the acidic subunit from Mojave toxin determined by Edman degradation and mass spectrometry. Biochimica Et Biophysica Acta. 1037: 413-21. PMID 2310754 DOI: 10.1016/0167-4838(90)90045-H  0.467
1989 Robinson EA, Yoshimura T, Leonard EJ, Tanaka S, Griffin PR, Shabanowitz J, Hunt DF, Appella E. Complete amino acid sequence of a human monocyte chemoattractant, a putative mediator of cellular immune reactions. Proceedings of the National Academy of Sciences of the United States of America. 86: 1850-4. PMID 2648385 DOI: 10.1073/Pnas.86.6.1850  0.477
1989 Moore CR, Yates JR, Griffin PR, Shabanowitz J, Martino PA, Hunt DF, Cafiso DS. Proteolytic fragments of the nicotinic acetylcholine receptor identified by mass spectrometry: implications for receptor topography. Biochemistry. 28: 9184-91. PMID 2605252 DOI: 10.1021/Bi00449A034  0.456
1989 Henry KD, Williams ER, Wang BH, McLafferty FW, Shabanowitz J, Hunt DF. Fourier-transform mass spectrometry of large molecules by electrospray ionization. Proceedings of the National Academy of Sciences of the United States of America. 86: 9075-8. PMID 2594751 DOI: 10.1073/Pnas.86.23.9075  0.53
1989 Krishnamurthy T, Szafraniec L, Hunt DF, Shabanowitz J, Yates JR, Hauer CR, Carmichael WW, Skulberg O, Codd GA, Missler S. Structural characterization of toxic cyclic peptides from blue-green algae by tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 86: 770-4. PMID 2492662 DOI: 10.1073/Pnas.86.3.770  0.464
1989 Hunt DF, Shabanowitz J, Yates JR, Griffin PR, Zhu N. Tamdem quadrupole fourier transform mass spectrometry Analytica Chimica Acta. 225: 1-10. DOI: 10.1016/S0003-2670(00)84589-4  0.511
1989 Hunt DF, Griffin PR, Yates JR, Shabanowitz J. 56 – Characterization Of Symposium Test Peptide-3 Techniques in Protein Chemistry. 580-588. DOI: 10.1016/B978-0-12-682001-0.50067-1  0.506
1989 Yates JR, Shabanowitz J, Griffin PR, Zhu NZ, Hunt DF. 17 – Sequence Analysis Of Protein C-Terminal Proteolytic Fragments, Protein Isolated From 2D-Gels, And Murine Calbindin: New Methodology Techniques in Protein Chemistry. 168-175. DOI: 10.1016/B978-0-12-682001-0.50024-5  0.503
1989 Griffin PR, Shabanowitz J, Yates JR, Zhu NZ, Hunt DF. 16 – Laser Photodissociation Fourier Transform Mass Spectrometry: New Methodology For Sequence Analysis Of Oligopeptides And Location Of Disulfide Bonds Techniques in Protein Chemistry. 160-167. DOI: 10.1016/B978-0-12-682001-0.50023-3  0.481
1988 Brinegar AC, Cooper G, Stevens A, Hauer CR, Shabanowitz J, Hunt DF, Fox JE. Characterization of a benzyladenine binding-site peptide isolated from a wheat cytokinin-binding protein: sequence analysis and identification of a single affinity-labeled histidine residue by mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 85: 5927-31. PMID 3413067 DOI: 10.1073/Pnas.85.16.5927  0.575
1988 Petra PH, Que BG, Namkung PC, Ross JBA, Charbonneau H, Walsh KA, Griffin PR, Shabanowitz J, Hunt DF. Affinity labeling, molecular cloning, and comparative amino acid sequence analyses of sex steroid-binding protein of plasma. A multidisciplinary approach for understanding steroid-protein interaction and its physiological role Annals of the New York Academy of Sciences. 538: 10-24. PMID 3190079 DOI: 10.1111/J.1749-6632.1988.Tb48844.X  0.434
1987 LeVine H, Hunt DF, Zhu NZ, Shabanowitz J. Amino acid sequence analysis of the neuronal type II calmodulin-dependent protein kinase by tandem mass spectrometry. Biochemical and Biophysical Research Communications. 148: 1104-9. PMID 3689388 DOI: 10.1016/S0006-291X(87)80246-2  0.507
1987 Hunt DF, Yates JR, Shabanowitz J, Zhu NZ, Zirino T, Averill BA, Daurat-Larroque ST, Shewale JG, Roberts RM, Brew K. Sequence homology in the metalloproteins; purple acid phosphatase from beef spleen and uteroferrin from porcine uterus. Biochemical and Biophysical Research Communications. 144: 1154-60. PMID 3579955 DOI: 10.1016/0006-291X(87)91432-X  0.442
1987 Hunt DF, Shabanowitz J, Yates JR, Zhu NZ, Russell DH, Castro ME. Tandem quadrupole Fourier-transform mass spectrometry of oligopeptides and small proteins. Proceedings of the National Academy of Sciences of the United States of America. 84: 620-3. PMID 3468502 DOI: 10.1073/Pnas.84.3.620  0.455
1987 Hunt DF, Shabanowitz J, Yates JR. Peptide sequence analysis by laser photodissociation Fourier transform mass spectrometry Journal of the Chemical Society, Chemical Communications. 548-550. DOI: 10.1039/C39870000548  0.499
1987 Weisz A, Mandelbaum A, Blum W, Domon B, Muller D, Richter WJ, Shabanowitz J, Hunt DF. Application of low energy CID in the determination of structures of [M - halogen]+ ions obtained from diethyl halosuccinates under electron impact Organic Mass Spectrometry. 22: 61-63. DOI: 10.1002/Oms.1210220202  0.477
1986 Hunt DF, Yates JR, Shabanowitz J, Winston S, Hauer CR. Protein sequencing by tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 83: 6233-7. PMID 3462691 DOI: 10.1073/Pnas.83.17.6233  0.528
1985 Hunt DF, Shabanowitz J, Yates JR, MeIver RT, Hunter RL, Syka JE, Amy J. Tandem quadrupole-Fourier transform mass spectrometry of oligopeptides. Analytical Chemistry. 57: 2728-33. PMID 4073518  0.419
1985 Hunt DF, Shabanowitz J, McIver RT, Hunter RL, Syka JE. Ionization and mass analysis of nonvolatile compounds by particle bombardment tandem-quadrupole Fourier transform mass spectrometry. Analytical Chemistry. 57: 765-8. PMID 3993950 DOI: 10.1021/Ac00280A043  0.484
1985 Hunt DF, Shabanowitz J, Harvey TM, Coates M. Scheme for the Direct Analysis of Organics in the Environment by Tandem Mass Spectrometry Analytical Chemistry. 57: 525-537. DOI: 10.1021/Ac50001A047  0.46
1984 Henderson TR, Sun JD, Li AP, Hanson RL, Bechtold WE, Harvey TM, Shabanowitz J, Hunt DF. GC/MS and MS/MS studies of diesel exhaust mutagenicity and emissions from chemically-defined fuels. Environmental Science & Technology. 18: 428-34. PMID 22247944 DOI: 10.1021/es00124a007  0.384
1984 Fitton JE, Hunt D, Marasco J, Shabanowitz J, Winston S, Dell A. The amino acid sequence of delta haemolysin purified from a canine isolate ofS. aureus Febs Letters. 169: 25-29. DOI: 10.1016/0014-5793(84)80282-3  0.491
1984 Weisz A, Mandelbaum A, Shabanowitz J, Hunt DF. The effect of configuration of gas phase protonated ethenedicarboxylates on their low energy collision induced dissociation behaviour Organic Mass Spectrometry. 19: 238-240. DOI: 10.1002/Oms.1210190508  0.482
1983 Hunt DF, Shabanowitz J, Harvey TM, Coates ML. Analysis of organics in the environment by functional group using a triple quadrupole mass spectrometer Journal of Chromatography A. 271: 93-105. DOI: 10.1016/S0021-9673(00)80202-2  0.503
1982 Hunt DF, Buko AM, Ballard JM, Shabanowitz J, Giordani AB. Sequence analysis of polypeptides by collision activated dissociation on a triple quadrupole mass spectrometer. Biomedical Mass Spectrometry. 8: 397-408. PMID 7306675 DOI: 10.1002/Bms.1200080909  0.556
1982 Hunt DF, Giordani AB, Shabanowitz J, Rhodes G. Retro-Diels-Alder, .gamma.-hydrogen rearrangement, and decarboxylation reactions. Pathways for fragmentation in the collisions activated dissociation mass spectra of ketones and carboxylic acid (M-1)- ions The Journal of Organic Chemistry. 47: 738-741. DOI: 10.1021/Jo00343A029  0.426
1982 Hunt DF, Shabanowitz J. Determination of organosulfur compounds in hydrocarbon matrixes by collision activated dissociation mass spectrometry Analytical Chemistry. 54: 574-578. DOI: 10.1021/Ac00240A051  0.481
1981 Hunt DF, Sethi SK, Shabanowitz J. Studies of negative ions by collision-induced decomposition and hydrogen-deuterium exchange techniques. Environmental Health Perspectives. 36: 33-8. PMID 7428745 DOI: 10.1289/Ehp.803633  0.49
1981 Hunt DF, Bone WM, Shabanowitz J, Rhodes J, Ballard JM. Sequence analysis of oligopeptides by secondary ion/collision activated dissociation mass spectrometry Analytical Chemistry. 53: 1704-1706. DOI: 10.1021/Ac00234A035  0.457
1980 Hunt DF, Shabanowitz J, Giordani AB. Collision activated decompositions in mixture analysis with a triple quadrupole mass spectrometer Analytical Chemistry. 52: 386-390. DOI: 10.1021/Ac50053A004  0.501
1977 Hunt DF, Stafford GC, Shabanowitz J, Crow FW. Determination of molecular compositions on a quadrupole mass spectrometer by pulsed positive ion negative ion chemical ionization mass spectrometry Analytical Chemistry. 49: 1884-1884. DOI: 10.1021/Ac50020A068  0.499
1977 Hunt DF, Shabanowitz J, Botz FK. Chemical ionization mass spectrometry of salts and thermally labile organics with field desorption emitters as solids probes Analytical Chemistry. 49: 1160-1163. DOI: 10.1021/Ac50016A025  0.472
1975 Shabanowitz J, Brynes P, Maelicke A, Bowen DV, Field FH. Chemical ionization mass spectrometry of quaternary amines Journal of Mass Spectrometry. 2: 164-167. DOI: 10.1002/Bms.1200020311  0.451
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