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John F. Marko

Affiliations:

Physics & Astronomy

Northwestern University, Evanston, IL

Area:

Applications of statistical mechanics and polymer physics to biophysical problems.

Website:

http://www.physics.northwestern.edu/people/personalpages/jmarko.html

Google:

"John Marko"

Bio:

Marko, John Frederick Daniel, On structure and scaling at first and second order phase transitions, Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Physics, 1989.

Mean distance: 14.5

Cross-listing: Astronomy Tree

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Parents

A. Nihat Berker	grad student	1989	MIT
(On structure and scaling at first and second order phase transitions)

Children

Michael G. Poirier	grad student	1996-2001	University of Illinois, Chicago
Abhijit Sarkar	grad student	1998-2002	University of Illinois, Chicago
Jie Yan	grad student	1998-2005	University of Illinois, Chicago
Dunja Skoko	grad student	2000-2006	University of Illinois, Chicago
Hua Bai	grad student	2003-2008	University of Illinois, Chicago
Ryo Kawamura	grad student	2004-2010	University of Illinois, Chicago
Botao Xiao	grad student	2011	Northwestern
Houyin Zhang	grad student	2012	Northwestern
Mingxuan Sun	grad student	2007-2012	Northwestern
Nastaran Hadizadeh Yazdi	grad student	2014	Northwestern
Adrienne Eastland	grad student	2010-2016	Northwestern

Collaborators

BETA: Related publications

Publications

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Nomidis SK, Carlon E, Gruber S, et al. (2022) DNA tension-modulated translocation and loop extrusion by SMC complexes revealed by molecular dynamics simulations. Nucleic Acids Research. 50: 4974-4987
Guo MS, Kawamura R, Littlehale ML, et al. (2021) High-resolution, genome-wide mapping of positive supercoiling in chromosomes. Elife. 10
Strom AR, Biggs RJ, Banigan EJ, et al. (2021) HP1α is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics. Elife. 10
Zaichuk T, Marko JF. (2021) Single-molecule micromanipulation studies of methylated DNA. Biophysical Journal
Serrano D, Cordero G, Kawamura R, et al. (2020) The Smc5/6 Core Complex Is a Structure-Specific DNA Binding and Compacting Machine. Molecular Cell
Desai PR, Brahmachari S, Marko JF, et al. (2020) Coarse-grained modelling of DNA plectoneme pinning in the presence of base-pair mismatches. Nucleic Acids Research
Biggs RJ, Liu N, Peng Y, et al. (2020) Micromanipulation of prophase I chromosomes from mouse spermatocytes reveals high stiffness and gel-like chromatin organization. Communications Biology. 3: 542
Banigan EJ, van den Berg AA, Brandão HB, et al. (2020) Chromosome organization by one-sided and two-sided loop extrusion. Elife. 9
Mirny LA, Musacchio A, Marko JF. (2020) Decision letter: Cohesin and condensin extrude DNA loops in a cell cycle-dependent manner Elife
Banigan EJ, Berg AAvd, Brandão HB, et al. (2020) Author response: Chromosome organization by one-sided and two-sided loop extrusion Elife