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Sethna Z, Elhanati Y, Callan CG, et al. (2019) OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs. Bioinformatics (Oxford, England) |
Elhanati Y, Sethna Z, Callan CG, et al. (2018) Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination. Immunological Reviews. 284: 167-179 |
Elhanati Y, Sethna Z, Marcou Q, et al. (2015) Inferring processes underlying B-cell repertoire diversity. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370 |
Elhanati Y, Murugan A, Callan CG, et al. (2014) Quantifying selection in immune receptor repertoires. Proceedings of the National Academy of Sciences of the United States of America. 111: 9875-80 |
Murugan A, Mora T, Walczak AM, et al. (2012) Statistical inference of the generation probability of T-cell receptors from sequence repertoires. Proceedings of the National Academy of Sciences of the United States of America. 109: 16161-6 |
Melnikov A, Murugan A, Zhang X, et al. (2012) Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay. Nature Biotechnology. 30: 271-7 |
Kinney JB, Murugan A, Callan CG, et al. (2010) Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence. Proceedings of the National Academy of Sciences of the United States of America. 107: 9158-63 |
Mora T, Walczak AM, Bialek W, et al. (2010) Maximum entropy models for antibody diversity. Proceedings of the National Academy of Sciences of the United States of America. 107: 5405-10 |
Tkacik G, Callan CG, Bialek W. (2008) Information capacity of genetic regulatory elements. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 011910 |
Mustonen V, Kinney J, Callan CG, et al. (2008) Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites. Proceedings of the National Academy of Sciences of the United States of America. 105: 12376-81 |