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Ryan G. Coleman, Ph.D.

Affiliations: 
2009 University of Pennsylvania, Philadelphia, PA, United States 
Area:
Bioinformatics Biology, General Biophysics, General Biology
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Kim A. Sharp grad student 2009 Penn
 (Shortest geometric paths analysis in structural biology.)

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Publications

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Fischer M, Coleman RG, Fraser JS, et al. (2014) Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nature Chemistry. 6: 575-83
Coleman RG, Sterling T, Weiss DR. (2014) SAMPL4 & DOCK3.7: Lessons for automated docking procedures Journal of Computer-Aided Molecular Design. 28: 201-209
Coleman RG, Carchia M, Sterling T, et al. (2013) Ligand pose and orientational sampling in molecular docking. Plos One. 8: e75992
Cameron RT, Coleman RG, Day JP, et al. (2013) Chemical informatics uncovers a new role for moexipril as a novel inhibitor of cAMP phosphodiesterase-4 (PDE4). Biochemical Pharmacology. 85: 1297-305
Irwin JJ, Sterling T, Mysinger MM, et al. (2012) ZINC: a free tool to discover chemistry for biology. Journal of Chemical Information and Modeling. 52: 1757-68
Carlsson J, Coleman RG, Setola V, et al. (2011) Ligand discovery from a dopamine D3 receptor homology model and crystal structure. Nature Chemical Biology. 7: 769-78
Coleman RG, Sharp KA. (2010) Protein pockets: inventory, shape, and comparison. Journal of Chemical Information and Modeling. 50: 589-603
Coleman RG, Sharp KA. (2010) Shape and evolution of thermostable protein structure. Proteins. 78: 420-33
Coleman RG, Sharp KA. (2009) Finding and characterizing tunnels in macromolecules with application to ion channels and pores. Biophysical Journal. 96: 632-45
Coleman RG, Sharp KA. (2009) Thermophilic protein structure adaptation examined with Burial Depth and Travel Depth Biophysical Journal. 96: 584a
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