Jarrod A. Chapman, PhD

Computational Genomics Joint Genome Institute, Walnut Creek, CA, United States 
"Jarrod Chapman"
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Daniel S. Rokhsar grad student 2004 UC Berkeley
 (Whole genome shotgun assembly in theory and practice.)
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Session AM, Uno Y, Kwon T, et al. (2016) Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 538: 336-343
Chapman JA, Mascher M, Buluç A, et al. (2015) A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biology. 16: 26
Lowry DB, Hernandez K, Taylor SH, et al. (2015) The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii. The New Phytologist. 205: 402-14
Wu GA, Prochnik S, Jenkins J, et al. (2014) Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology. 32: 656-62
Lukaszewski AJ, Alberti A, Sharpe A, et al. (2014) A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome Science. 345
Georganas E, Buluç A, Chapman J, et al. (2014) Parallel de Bruijn Graph Construction and Traversal for de Novo Genome Assembly International Conference For High Performance Computing, Networking, Storage and Analysis, Sc. 2015: 437-448
Strnadová V, Buluc A, Chapman J, et al. (2014) Efficient and accurate clustering for large-scale genetic mapping Proceedings - 2014 Ieee International Conference On Bioinformatics and Biomedicine, Ieee Bibm 2014. 3-10
Mascher M, Muehlbauer GJ, Rokhsar DS, et al. (2013) Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). The Plant Journal : For Cell and Molecular Biology. 76: 718-27
Slotte T, Hazzouri KM, Ã…gren JA, et al. (2013) The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5
Simakov O, Marletaz F, Cho SJ, et al. (2013) Insights into bilaterian evolution from three spiralian genomes. Nature. 493: 526-31
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