Yaoqi Zhou

Affiliations: 
State University of New York, Buffalo, Buffalo, NY, United States 
Area:
General Biophysics, Bioinformatics Biology
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"Yaoqi Zhou"
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Parents

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Martin Karplus post-doc 1995-2000 Harvard (Chemistry Tree)

Children

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Beisi Xu grad student SUNY Buffalo (Neurotree)
Qianqian Zhu grad student SUNY Buffalo (FlyTree)
Yuedong Yang post-doc 2006-2012 Indiana University (Chemistry Tree)
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Publications

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Singh J, Paliwal K, Zhang T, et al. (2021) Improved RNA Secondary Structure and Tertiary Base-pairing Prediction Using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning. Bioinformatics (Oxford, England)
Zhou B, Ji B, Liu K, et al. (2020) EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments. Nucleic Acids Research
Zhao B, Katuwawala A, Oldfield CJ, et al. (2020) DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Research
Hanumanthappa AK, Singh J, Paliwal K, et al. (2020) Single-sequence and profile-based prediction of RNA solvent accessibility using dilated convolutional neural network. Bioinformatics (Oxford, England)
Atack JM, Guo C, Litfin T, et al. (2020) Systematic Analysis of REBASE Identifies Numerous Type I Restriction-Modification Systems with Duplicated, Distinct Specificity Genes That Can Switch System Specificity by Recombination. Msystems. 5
Brown P, Zhou Y. (2020) Erratum to: Large expert-curated database for benchmarking document similarity detection in biomedical literature search. Database : the Journal of Biological Databases and Curation. 2020
Cao Z, Liu L, Hu G, et al. (2020) Interplay of hydrophobic and hydrophilic interactions in sequence-dependent cell penetration of spontaneous membrane-translocating peptides revealed by bias-exchange metadynamics simulations. Biochimica Et Biophysica Acta. Biomembranes. 183402
Tan A, Blakeway LV, Taha, et al. (2020) Moraxella catarrhalis phase-variable loci show differences in expression during conditions relevant to disease. Plos One. 15: e0234306
Wang K, Lyu N, Diao H, et al. (2020) GM-DockZn: A Geometry Matching based Docking Algorithm for Zinc Proteins. Bioinformatics (Oxford, England)
Hanson J, Paliwal KK, Litfin T, et al. (2020) SPOT-Disorder2: Improved Protein Intrinsic Disorder Prediction by Ensembled Deep Learning. Genomics, Proteomics & Bioinformatics
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