Jay W. Ponder

Affiliations: 
Washington University, Saint Louis, St. Louis, MO 
Area:
General Biophysics, Condensed Matter Physics, Biomedical Engineering
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"Jay Ponder"
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Parents

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Elias James Corey grad student 1984 Harvard (Chemistry Tree)

Children

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Brooke Husic research assistant (Chemistry Tree)
Sukrit Singh research assistant 2013-2014 Washington University (Chemistry Tree)
Michael J. Schnieders grad student 2007 Washington University
Pengyu Ren post-doc Washington University Medical School (Chemistry Tree)
Rohit V. Pappu post-doc 1996-1998 Washington University (BME Tree)
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Publications

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Corrigan RA, Thiel AC, Lynn JR, et al. (2023) A generalized Kirkwood implicit solvent for the polarizable AMOEBA protein model. The Journal of Chemical Physics. 159
Chung MKJ, Miller RJ, Novak B, et al. (2023) Accurate Host-Guest Binding Free Energies Using the AMOEBA Polarizable Force Field. Journal of Chemical Information and Modeling
Chung MKJ, Wang Z, Rackers JA, et al. (2022) Classical Exchange Polarization: An Anisotropic Variable Polarizability Model. The Journal of Physical Chemistry. B
El Khoury L, Jing Z, Cuzzolin A, et al. (2022) Computationally driven discovery of SARS-CoV-2 M inhibitors: from design to experimental validation. Chemical Science. 13: 3674-3687
Rackers JA, Silva RR, Wang Z, et al. (2021) Polarizable Water Potential Derived from a Model Electron Density. Journal of Chemical Theory and Computation. 17: 7056-7084
Corrigan RA, Qi G, Thiel AC, et al. (2021) Implicit Solvents for the Polarizable Atomic Multipole AMOEBA Force Field. Journal of Chemical Theory and Computation
Adjoua O, Lagardère L, Jolly LH, et al. (2021) Tinker-HP: Accelerating Molecular Dynamics Simulations of Large Complex Systems with Advanced Point Dipole Polarizable Force Fields Using GPUs and Multi-GPU Systems. Journal of Chemical Theory and Computation
Adjoua O, Lagardère L, Jolly LH, et al. (2020) Tinker-HP : Accelerating Molecular Dynamics Simulations of Large Complex Systems with Advanced Point Dipole Polarizable Force Fields using GPUs and Multi-GPUs systems. Arxiv
Shi Y, Laury ML, Wang Z, et al. (2020) AMOEBA binding free energies for the SAMPL7 TrimerTrip host-guest challenge. Journal of Computer-Aided Molecular Design
Rackers JA, Ponder JW. (2019) Classical Pauli repulsion: An anisotropic, atomic multipole model. The Journal of Chemical Physics. 150: 084104
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