Jay W. Ponder

Affiliations: 
Washington University, Saint Louis, St. Louis, MO 
Area:
General Biophysics, Condensed Matter Physics, Biomedical Engineering
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"Jay Ponder"
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Parents

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Elias James Corey grad student 1984 Harvard (Chemistry Tree)

Children

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Brooke Husic research assistant (Chemistry Tree)
Sukrit Singh research assistant 2013-2014 Washington University (Chemistry Tree)
Michael J. Schnieders grad student 2007 Washington University
Pengyu Ren post-doc Washington University Medical School (Chemistry Tree)
Rohit V. Pappu post-doc 1996-1998 Washington University (BME Tree)
Alan M. Grossfield post-doc 2000-2004 Washington University in St. Louis, School of Medicine (Chemistry Tree)
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Publications

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Bone RA, Chung MKJ, Ponder JW, et al. (2024) A new method to calculate broadband dielectric spectra of solvents from molecular dynamics simulations demonstrated with polarizable force fields. The Journal of Chemical Physics. 161
Gogal RA, Nessler AJ, Thiel AC, et al. (2024) Force Field X: A computational microscope to study genetic variation and organic crystals using theory and experiment. The Journal of Chemical Physics. 161
Chung MKJ, Ponder JW. (2024) Beyond isotropic repulsion: Classical anisotropic repulsion by inclusion of p orbitals. The Journal of Chemical Physics. 160
Thiel AC, Speranza MJ, Jadhav S, et al. (2024) Constant-pH Simulations with the Polarizable Atomic Multipole AMOEBA Force Field. Journal of Chemical Theory and Computation
Corrigan RA, Thiel AC, Lynn JR, et al. (2023) A generalized Kirkwood implicit solvent for the polarizable AMOEBA protein model. The Journal of Chemical Physics. 159
Chung MKJ, Miller RJ, Novak B, et al. (2023) Accurate Host-Guest Binding Free Energies Using the AMOEBA Polarizable Force Field. Journal of Chemical Information and Modeling
Chung MKJ, Wang Z, Rackers JA, et al. (2022) Classical Exchange Polarization: An Anisotropic Variable Polarizability Model. The Journal of Physical Chemistry. B
El Khoury L, Jing Z, Cuzzolin A, et al. (2022) Computationally driven discovery of SARS-CoV-2 M inhibitors: from design to experimental validation. Chemical Science. 13: 3674-3687
Rackers JA, Silva RR, Wang Z, et al. (2021) Polarizable Water Potential Derived from a Model Electron Density. Journal of Chemical Theory and Computation. 17: 7056-7084
Corrigan RA, Qi G, Thiel AC, et al. (2021) Implicit Solvents for the Polarizable Atomic Multipole AMOEBA Force Field. Journal of Chemical Theory and Computation
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