Nikolay Simakov, Ph.D.
Affiliations: | 2010 | Carnegie Mellon University, Pittsburgh, PA |
Area:
Molecular ChemistryGoogle:
"Nikolay Simakov"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Maria Kurnikova | grad student | 2010 | Carnegie Mellon | |
| (Theoretical Modeling of Current-Voltage Characteristics of Biological Ion Channels.) | ||||
| Maria G Kurnikova | grad student | 2004-2010 | Carnegie Mellon | |
| (Theoretical Modeling of Current-Voltage Characteristics of Biological Ion Channels.) | ||||
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Publications
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| Simakov NA, Kurnikova MG. (2018) Membrane Position Dependency of the pKa and Conductivity of the Protein Ion Channel. The Journal of Membrane Biology |
| Simakov NA, Leonard DA, Smith JC, et al. (2016) A Distal Disulfide Bridge in OXA-1 β-Lactamase Stabilizes the Catalytic Center and Alters the Dynamics of Specificity Determining Ω Loop. The Journal of Physical Chemistry. B |
| Kurnikov IV, Kyrychenko A, Flores-Canales JC, et al. (2013) pH-triggered conformational switching of the diphtheria toxin T-domain: the roles of N-terminal histidines. Journal of Molecular Biology. 425: 2752-64 |
| Simakov NA, Kurnikova MG. (2013) Graphical Processing Unit accelerated Poisson equation solver and its application for calculation of single ion potential in ion-channels Computational and Mathematical Biophysics. 1: 151-163 |
| Flores-Canales JC, Kurnikov I, Simakov N, et al. (2011) Mechanism of the pH-Triggered Formation of Membrane-Competent State of the Diphtheria Toxin Translocation Domain Revealed by Simulations and Experiment Biophysical Journal. 100: 206a |
| Simakov NA, Kurnikova MG. (2010) Soft wall ion channel in continuum representation with application to modeling ion currents in α-hemolysin. The Journal of Physical Chemistry. B. 114: 15180-90 |
| Simakov NA, Kurnikova MG. (2010) Extension of Poisson-Nernst Planck Theory of Ion Conductivity with Soft-Repulsion Potential between Ions and Protein. Sensitivity of I-V Properties of α-Hemolysin Channel on its Penetration Depth into Membrane Biophysical Journal. 98: 333a |
| Simakov NA, Kurnikova MG. (2009) Calculation of Current-Voltage properties of Biological Ion Channel, using Poisson-Nernst-Planck (PNP) Theory Biophysical Journal. 96: 662a |