Jakub Otwinowski
Affiliations: | Physics | Emory University, Atlanta, GA |
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"Jakub Otwinowski"Mean distance: 14.12 | S | N | B | C | P |
Parents
Sign in to add mentor| Ilya Mark Nemenman | grad student | 2010-2012 | Emory | |
| (Speed of evolution with spatial structure and interacting mutations.) | ||||
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Publications
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| Otwinowski J, LaMont CH, Nourmohammad A. (2020) Information-Geometric Optimization with Natural Selection. Entropy (Basel, Switzerland). 22 |
| Nourmohammad A, Otwinowski J, Łuksza M, et al. (2019) Fierce selection and interference in B-cell repertoire response to chronic HIV-1. Molecular Biology and Evolution |
| Otwinowski J. (2018) Biophysical inference of epistasis and the effects of mutations on protein stability and function. Molecular Biology and Evolution |
| Otwinowski J, McCandlish DM, Plotkin JB. (2018) Inferring the shape of global epistasis. Proceedings of the National Academy of Sciences of the United States of America. 115: E7550-E7558 |
| Nourmohammad A, Otwinowski J, Plotkin JB. (2016) Host-Pathogen Coevolution and the Emergence of Broadly Neutralizing Antibodies in Chronic Infections. Plos Genetics. 12: e1006171 |
| McCandlish DM, Otwinowski J, Plotkin JB. (2015) Detecting epistasis from an ensemble of adapting populations. Evolution; International Journal of Organic Evolution |
| Otwinowski J, Krug J. (2014) Clonal interference and Muller's ratchet in spatial habitats. Physical Biology. 11: 056003 |
| Otwinowski J, Plotkin JB. (2014) Inferring fitness landscapes by regression produces biased estimates of epistasis. Proceedings of the National Academy of Sciences of the United States of America. 111: E2301-9 |
| Otwinowski J, Nemenman I. (2013) Genotype to phenotype mapping and the fitness landscape of the E. coli lac promoter. Plos One. 8: e61570 |
| Otwinowski J, Tanase-Nicola S, Nemenman I. (2011) Speeding up Evolutionary Search by Small Fitness Fluctuations. Journal of Statistical Physics. 144: 367-378 |