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José Nelson Onuchic

Affiliations: 
1990-2011 Physics University of California, San Diego, La Jolla, CA 
 2011- Physics Rice University, Houston, TX 
Area:
Theoretical Biological Physics
Website:
https://chemistry.rice.edu/FacultyDetail.aspx?p=51BE2F2C673C5991
Google:
"José Nelson Onuchic"
Bio:

http://www.nasonline.org/member-directory/members/3012188.html
DOI: 10.1073/pnas.1007425107
https://history.aip.org/phn/11607030.html
http://www.cprit.state.tx.us/funded-grants/cprit-scholars/dr-jose-onuchic
Onuchic, Jose Nelson New aspects of the theory of electron transfer reaction dynamics. Dissertation (Ph.D.), California Institute of Technology (1987).

Mean distance: 11.56
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Cross-listing: Chemistry Tree

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Parents

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John J. Hopfield grad student 1987 Caltech
 (New aspects of the theory of electron transfer reaction dynamics)

Children

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Peter Leopold grad student UCSD (Chemistry Tree)
Zhipeng Wang grad student (Computational Biology Tree)
Kareem M Mehrabiani grad student 2015- Rice University
Vitor Barbanti Pereira Leite grad student 1989-1995 UCSD
Marcos R Betancourt grad student 1992-1995 Rice University
Hugh Nymeyer grad student 2001 UCSD
Tongye Shen grad student 2002 UCSD
Margaret Shun Cheung grad student 2003 UCSD
Leslie Lou Chavez grad student 2005 UCSD
Sichun Yang grad student 2006 UCSD
Paul Charles Whitford grad student 2009 UCSD
Jeffrey Kenneth Noel grad student 2012 UCSD
Xingcheng Lin grad student 2012-2018 Rice University
Fang Bai post-doc Rice University
Steven S. Plotkin post-doc Rice University (Chemistry Tree)
Joan-Emma Shea post-doc 1997-2000 Scripps Research Institute (Chemistry Tree)
Changbong Hyeon post-doc 2006-2007 UCSD (Chemistry Tree)
Biman Jana post-doc 2011-2013 Rice University (Chemistry Tree)
Ryan R Cheng post-doc 2013-2022 Rice University (Chemistry Tree)

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Publications

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Ruben BS, Brahmachari S, Contessoto VG, et al. (2023) Structural Reorganization and Relaxation Dynamics of Axially Stressed Chromosomes. Biophysical Journal
Contessoto VG, Dudchenko O, Aiden EL, et al. (2023) Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues. Nature Communications. 14: 326
Bononi A, Wang Q, Zolondick AA, et al. (2023) BAP1 is a novel regulator of HIF-1α. Proceedings of the National Academy of Sciences of the United States of America. 120: e2217840120
Galbraith M, Levine H, Onuchic JN, et al. (2022) Decoding the coupled decision-making of the epithelial-mesenchymal transition and metabolic reprogramming in cancer. Iscience. 26: 105719
Manna RN, Onuchic JN, Jana B. (2022) Road-blocker HSP disease mutation disrupts pre-organization for ATP hydrolysis in kinesin through a second sphere control. Proceedings of the National Academy of Sciences of the United States of America. 120: e2215170120
Ng Chau K, George JT, Onuchic JN, et al. (2022) Contact map dependence of a T-cell receptor binding repertoire. Physical Review. E. 106: 014406
Prajapati JD, Onuchic JN, Sanbonmatsu KY. (2022) Exploring the Energy Landscape of Riboswitches Using Collective Variables Based on Tertiary Contacts. Journal of Molecular Biology. 167788
Contessoto VG, Cheng RR, Onuchic JN. (2022) Uncovering the statistical physics of 3D chromosomal organization using data-driven modeling. Current Opinion in Structural Biology. 75: 102418
Freitas FC, Maldonado M, Oliveira Junior AB, et al. (2022) Biotin-painted proteins have thermodynamic stability switched by kinetic folding routes. The Journal of Chemical Physics. 156: 195101
Markosian C, Staquicini DI, Dogra P, et al. (2022) Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection. Molecular Biology and Evolution
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