Karissa Y. Sanbonmatsu, Ph.D.
Affiliations: | 1997- | Theoretical Division | Los Alamos National Laboratory, Los Alamos, NM, United States |
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"Karissa Sanbonmatsu"Parents
Sign in to add mentor| Martin V. Goldman | grad student | 1997 | CU Boulder (Physics Tree) |
| Donald F. DuBois | post-doc | 1997-1999 | LANL (Physics Tree) |
Children
Sign in to add trainee| Anna Lappala | post-doc | Harvard University & Massachusetts General Hospital | |
| Andrea C. Vaiana | post-doc | 2006-2009 | Max Plack Institute of Biochemistry |
| Scott P. Hennelly | post-doc | 2007-2010 | LANL (Microtree) |
| Paul Charles Whitford | post-doc | 2009-2012 | Northeastern University (Physics Tree) |
| Irina V. Novikova | post-doc | 2010-2013 | PNNL |
| Ashutosh Dharap | post-doc | 2013-2015 | Florida State |
| Serdal Kirmizialtin | post-doc | 2013-2015 | New York University Abu Dhabi (Chemistry Tree) |
| Doo Nam Kim | post-doc | 2016-2019 | PNNL |
| Wataru Nishima | post-doc | 2016-2019 | New Mexico Consortium |
| Dylan Girodat | post-doc | 2018-2022 | University of Arkansas |
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Publications
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| Girodat D, Wieden HJ, Blanchard SC, et al. (2023) Geometric alignment of aminoacyl-tRNA relative to catalytic centers of the ribosome underpins accurate mRNA decoding. Nature Communications. 14: 5582 |
| Prajapati JD, Onuchic JN, Sanbonmatsu KY. (2022) Exploring the Energy Landscape of Riboswitches Using Collective Variables Based on Tertiary Contacts. Journal of Molecular Biology. 167788 |
| Nishima W, Girodat D, Holm M, et al. (2022) Hyper-swivel head domain motions are required for complete mRNA-tRNA translocation and ribosome resetting. Nucleic Acids Research |
| Miner JC, Fenimore PW, Fischer WM, et al. (2022) Integrative structural studies of the SARS-CoV-2 spike protein during the fusion process (2022). Current Research in Structural Biology. 4: 220-230 |
| Sanbonmatsu K. (2022) Towards Molecular Mechanism in Long Non-coding RNAs: Linking Structure and Function. Advances in Experimental Medicine and Biology. 1363: 23-32 |
| Lappala A, Wang CY, Kriz A, et al. (2021) Four-dimensional chromosome reconstruction elucidates the spatiotemporal reorganization of the mammalian X chromosome. Proceedings of the National Academy of Sciences of the United States of America. 118 |
| Sanbonmatsu K. (2021) Getting to the bottom of lncRNA mechanism: structure-function relationships. Mammalian Genome : Official Journal of the International Mammalian Genome Society |
| Sarkar R, Jaiswar A, Hennelly SP, et al. (2021) Chelated Magnesium Logic Gate Regulates Riboswitch Pseudoknot Formation. The Journal of Physical Chemistry. B |
| Miner JC, Lappala A, Fenimore PW, et al. (2021) Modeling the NP-vRNA-Polymerase Complex in Atomic Detail. Biomolecules. 11 |
| Girodat D, Pati AK, Terry DS, et al. (2020) Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein. Plos Computational Biology. 16: e1008293 |