Douglas E Smith
Affiliations: | University of California, San Diego, La Jolla, CA |
Area:
Biophysics, Polymer PhysicsGoogle:
"Douglas Smith"Mean distance: (not calculated yet)
Parents
Sign in to add mentorAlbert J. Libchaber | research assistant | 1990-1992 | |
Steven Chu | grad student | 1993-1999 | |
Carlos José Bustamante | post-doc | 1999-2001 | (Chemistry Tree) |
Children
Sign in to add traineeRachel Millin | research assistant | UCSD | |
Dorian Raymer | research assistant | UCSD | |
John Peter Rickgauer | research assistant | UCSD (Neurotree) | |
Zachary Berndsen | grad student | UCSD | |
Cody Chapman | grad student | UCSD | |
Damian delToro | grad student | UCSD | |
Derek Fuller | grad student | UCSD | |
Greg Gemmen | grad student | (Chemistry Tree) | |
Nicholas Keller | grad student | UCSD | |
Amy D. Migliori | grad student | UCSD (Chemistry Tree) | |
Mariam Ordyan | grad student | UCSD | |
Rae Robertson-Anderson | grad student | UCSD | |
James M. Tsay | grad student | (Chemistry Tree) | |
Gregory J. Gemmen | grad student | 2006 | UCSD |
Rae M. Robertson | grad student | 2007 | UCSD |
Puchun Ke | post-doc | UCSD | |
Stephan Laib | post-doc | UCSD |
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Publications
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Fizari M, Keller N, Jardine PJ, et al. (2023) Role of DNA-DNA sliding friction and nonequilibrium dynamics in viral genome ejection and packaging. Nucleic Acids Research |
Fizari M, Keller N, Jardine PJ, et al. (2023) Role of DNA-DNA sliding friction and non-equilibrium dynamics in viral genome ejection and packaging. Biorxiv : the Preprint Server For Biology |
Mo Y, Fizari M, Koharchik K, et al. (2021) Determining Trap Compliances, Microsphere Size Variations, and Response Linearities in Single DNA Molecule Elasticity Measurements with Optical Tweezers. Frontiers in Molecular Biosciences. 8: 605102 |
Mo Y, Keller N, delToro D, et al. (2020) Function of a viral genome packaging motor from bacteriophage T4 is insensitive to DNA sequence. Nucleic Acids Research |
Ordyan M, Fizari M, Chien J, et al. (2020) Regulation of Viral Packaging Motors Grip on DNA and Discovery of a DNA “End-Clamp” Mechanism Biophysical Journal. 118: 75a |
Fizari M, Smith DE. (2020) Restricted Mobility of DNA Packaged in Phage PHI29 Viral Proheads Assessed by Single-Molecule Optical Tweezers Measurements of DNA Exit Biophysical Journal. 118: 63a |
Mo Y, Keller NA, Smith DE. (2020) High GC Content DNA does not Affect Phage T4 DNA Packaging -- Test of a Scrunchworm Model for Packaging Motor Function Biophysical Journal. 118: 188a |
delToro D, Ortiz D, Ordyan M, et al. (2019) Functional Dissection of a Viral DNA Packaging Machine's Walker B Motif. Journal of Molecular Biology |
Smith DE, Chu S. (2019) Response of flexible polymers to a sudden elongational flow Science (New York, N.Y.). 281: 1335-40 |
Ordyan M, Alam I, Mahalingam M, et al. (2018) Nucleotide-dependent DNA gripping and an end-clamp mechanism regulate the bacteriophage T4 viral packaging motor. Nature Communications. 9: 5434 |