Hugh Nymeyer
Affiliations: | 2001 | University of California, San Diego, La Jolla, CA |
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"Hugh Nymeyer"Mean distance: 13.07 | S | N | B | C | P |
Parents
Sign in to add mentor| José Nelson Onuchic | grad student | 2001 | UCSD | |
| (Computational studies of protein folding.) | ||||
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Publications
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| Nymeyer H. (2009) Energy landscape of the trpzip2 peptide. The Journal of Physical Chemistry. B. 113: 8288-95 |
| Nymeyer H. (2008) How Efficient Is Replica Exchange Molecular Dynamics? An Analytic Approach. Journal of Chemical Theory and Computation. 4: 626-36 |
| Nymeyer H, Zhou HX. (2008) A method to determine dielectric constants in nonhomogeneous systems: application to biological membranes. Biophysical Journal. 94: 1185-93 |
| Boone MA, Nymeyer H, Striegel AM. (2008) Determining the solution conformational entropy of O-linked oligosaccharides at quasi-physiological conditions: size-exclusion chromatography and molecular dynamics. Carbohydrate Research. 343: 132-8 |
| Yang W, Nymeyer H, Zhou HX, et al. (2008) Quantitative computer simulations of biomolecules: a snapshot. Journal of Computational Chemistry. 29: 668-72 |
| Paschek D, Nymeyer H, GarcÃa AE. (2007) Replica exchange simulation of reversible folding/unfolding of the Trp-cage miniprotein in explicit solvent: on the structure and possible role of internal water. Journal of Structural Biology. 157: 524-33 |
| Ji L, Nymeyer H, Srinivasan A, et al. (2007) Data-driven time-parallelization in the AFM simulation of proteins Proceedings - 21st International Parallel and Distributed Processing Symposium, Ipdps 2007; Abstracts and Cd-Rom |
| Ji L, Nymeyer H, Srinivasan A, et al. (2007) Data-driven time-parallelization in the AFM simulation of proteins Proceedings - 21st International Parallel and Distributed Processing Symposium, Ipdps 2007; Abstracts and Cd-Rom |
| Nymeyer H, Woolf TB, Garcia AE. (2005) Folding is not required for bilayer insertion: replica exchange simulations of an alpha-helical peptide with an explicit lipid bilayer. Proteins. 59: 783-90 |
| Nymeyer H, Gnanakaran S, García AE. (2004) Atomic simulations of protein folding, using the replica exchange algorithm. Methods in Enzymology. 383: 119-49 |