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Jack Waters - Publications

Affiliations: 
North Western University, Evanston, IL, United States 
 University of Washington, Seattle, Seattle, WA 
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Zhuang J, Wang Y, Ouellette ND, Turschak EE, Larsen RS, Takasaki KT, Daigle TL, Tasic B, Waters J, Zeng H, Reid RC. Laminar distribution and arbor density of two functional classes of thalamic inputs to primary visual cortex. Cell Reports. 37: 109826. PMID 34644562 DOI: 10.1016/j.celrep.2021.109826  0.558
2019 de Vries SEJ, Lecoq JA, Buice MA, Groblewski PA, Ocker GK, Oliver M, Feng D, Cain N, Ledochowitsch P, Millman D, Roll K, Garrett M, Keenan T, Kuan L, Mihalas S, ... ... Waters J, et al. A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex. Nature Neuroscience. PMID 31844315 DOI: 10.1038/S41593-019-0550-9  0.606
2019 Takasaki KT, Tsyboulski D, Waters J. Dual-plane 3-photon microscopy with remote focusing. Biomedical Optics Express. 10: 5585-5599. PMID 31799032 DOI: 10.1364/BOE.10.005585  0.314
2019 Valley MT, Moore MG, Zhuang J, Mesa N, Castelli D, Sullivan D, Reimers M, Waters J. Separation of hemodynamic signals from GCaMP fluorescence measured with widefield imaging. Journal of Neurophysiology. PMID 31747332 DOI: 10.1152/Jn.00304.2019  0.739
2019 Weed N, Bakken T, Graddis N, Gouwens N, Millman D, Hawrylycz M, Waters J. Identification of genetic markers for cortical areas using a Random Forest classification routine and the Allen Mouse Brain Atlas. Plos One. 14: e0212898. PMID 31483788 DOI: 10.1371/Journal.Pone.0212898  0.319
2019 Waters J, Lee E, Gaudreault N, Griffin F, Lecoq J, Slaughterbeck C, Sullivan D, Farrell C, Perkins J, Reid D, Feng D, Graddis N, Garrett M, Li Y, Long F, et al. Biological variation in the sizes, shapes and locations of visual cortical areas in the mouse. Plos One. 14: e0213924. PMID 31042712 DOI: 10.1371/Journal.Pone.0213924  0.576
2019 Takasaki K, Larkin J, Abbasi-Asl R, Denman D, Millman D, Vries Sd, Takeno M, Costa NMd, Reid RC, Waters J. 3-Photon Calcium Imaging of Deep Cortical Layers for Functional Connectomics Brain. DOI: 10.1364/Brain.2019.Bm4A.4  0.367
2018 Arkhipov A, Gouwens NW, Billeh YN, Gratiy S, Iyer R, Wei Z, Xu Z, Abbasi-Asl R, Berg J, Buice M, Cain N, da Costa N, de Vries S, Denman D, Durand S, ... ... Waters J, et al. Visual physiology of the layer 4 cortical circuit in silico. Plos Computational Biology. 14: e1006535. PMID 30419013 DOI: 10.1371/Journal.Pcbi.1006535  0.404
2018 Daigle TL, Madisen L, Hage TA, Valley MT, Knoblich U, Larsen RS, Takeno MM, Huang L, Gu H, Larsen R, Mills M, Bosma-Moody A, Siverts LA, Walker M, Graybuck LT, ... ... Waters J, et al. A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality. Cell. 174: 465-480.e22. PMID 30007418 DOI: 10.1016/J.Cell.2018.06.035  0.668
2018 Zhuang J, Wang Q, Takeno M, Waters J. Registration and Alignment Between Functional and Cytoarchitectonic Maps of Mouse Visual Cortex. Bio-Protocol. 8. PMID 29644256 DOI: 10.21769/BioProtoc.2731  0.535
2017 Steinmetz NA, Buetfering C, Lecoq J, Lee CR, Peters AJ, Jacobs EAK, Coen P, Ollerenshaw DR, Valley MT, de Vries SEJ, Garrett M, Zhuang J, Groblewski PA, Manavi S, Miles J, ... ... Waters J, et al. Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines. Eneuro. 4. PMID 28932809 DOI: 10.1523/ENEURO.0207-17.2017  0.658
2017 Zhuang J, Ng L, Williams D, Valley M, Li Y, Garrett M, Waters J. An extended retinotopic map of mouse cortex. Elife. 6. PMID 28059700 DOI: 10.7554/Elife.18372  0.734
2016 Hawrylycz M, Anastassiou C, Arkhipov A, Berg J, Buice M, Cain N, Gouwens NW, Gratiy S, Iyer R, Lee JH, Mihalas S, Mitelut C, Olsen S, Reid RC, Teeter C, ... ... Waters J, et al. Inferring cortical function in the mouse visual system through large-scale systems neuroscience. Proceedings of the National Academy of Sciences of the United States of America. 113: 7337-44. PMID 27382147 DOI: 10.1073/Pnas.1512901113  0.385
2016 Hedrick T, Danskin B, Larsen RS, Ollerenshaw D, Groblewski P, Valley M, Olsen S, Waters J. Characterization of Channelrhodopsin and Archaerhodopsin in Cholinergic Neurons of Cre-Lox Transgenic Mice. Plos One. 11: e0156596. PMID 27243816 DOI: 10.1371/Journal.Pone.0156596  0.763
2016 Zhuang J, Ng L, Williams D, Valley M, Li Y, Garrett M, Waters J. Author response: An extended retinotopic map of mouse cortex Elife. DOI: 10.7554/Elife.18372.034  0.717
2015 Danskin B, Denman D, Valley M, Ollerenshaw D, Williams D, Groblewski P, Reid C, Olsen S, Waters J. Optogenetics in Mice Performing a Visual Discrimination Task: Measurement and Suppression of Retinal Activation and the Resulting Behavioral Artifact. Plos One. 10: e0144760. PMID 26657323 DOI: 10.1371/Journal.Pone.0144760  0.651
2015 Hedrick T, Waters J. Acetylcholine excites neocortical pyramidal neurons via nicotinic receptors. Journal of Neurophysiology. 113: 2195-209. PMID 25589590 DOI: 10.1152/Jn.00716.2014  0.593
2014 Kalmbach A, Waters J. Modulation of high- and low-frequency components of the cortical local field potential via nicotinic and muscarinic acetylcholine receptors in anesthetized mice. Journal of Neurophysiology. 111: 258-72. PMID 24155009 DOI: 10.1152/jn.00244.2013  0.695
2012 Kalmbach AS, Waters J. Brain surface temperature under a craniotomy. Journal of Neurophysiology. 108: 3138-46. PMID 22972953 DOI: 10.1152/jn.00557.2012  0.674
2012 Srivastava DP, Jones KA, Woolfrey KM, Burgdorf J, Russell TA, Kalmbach A, Lee H, Yang C, Bradberry MM, Wokosin D, Moskal JR, Casanova MF, Waters J, Penzes P. Social, communication, and cortical structural impairments in Epac2-deficient mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 11864-78. PMID 22915127 DOI: 10.1523/Jneurosci.1349-12.2012  0.708
2012 Hedrick T, Waters J. Effect of temperature on spiking patterns of neocortical layer 2/3 and layer 6 pyramidal neurons. Frontiers in Neural Circuits. 6: 28. PMID 22593736 DOI: 10.3389/Fncir.2012.00028  0.582
2012 Kalmbach A, Hedrick T, Waters J. Selective optogenetic stimulation of cholinergic axons in neocortex. Journal of Neurophysiology. 107: 2008-19. PMID 22236708 DOI: 10.1152/Jn.00870.2011  0.765
2012 Wykes R, Kalmbach A, Eliava M, Waters J. Changes in the physiology of CA1 hippocampal pyramidal neurons in preplaque CRND8 mice. Neurobiology of Aging. 33: 1609-23. PMID 21676499 DOI: 10.1016/j.neurobiolaging.2011.05.001  0.736
2011 Hedrick T, Waters J. Spiking patterns of neocortical L5 pyramidal neurons in vitro change with temperature. Frontiers in Cellular Neuroscience. 5: 1. PMID 21286222 DOI: 10.3389/Fncel.2011.00001  0.596
2010 Hedrick T, Waters J. Physiological properties of cholinergic and non-cholinergic magnocellular neurons in acute slices from adult mouse nucleus basalis. Plos One. 5: e11046. PMID 20548784 DOI: 10.1371/Journal.Pone.0011046  0.599
2007 Larkum ME, Waters J, Sakmann B, Helmchen F. Dendritic spikes in apical dendrites of neocortical layer 2/3 pyramidal neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 8999-9008. PMID 17715337 DOI: 10.1523/JNEUROSCI.1717-07.2007  0.67
2006 Komai S, Licznerski P, Cetin A, Waters J, Denk W, Brecht M, Osten P. Postsynaptic excitability is necessary for strengthening of cortical sensory responses during experience-dependent development. Nature Neuroscience. 9: 1125-33. PMID 16921372 DOI: 10.1038/nn1752  0.557
2006 Waters J, Helmchen F. Background synaptic activity is sparse in neocortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 8267-77. PMID 16899721 DOI: 10.1523/JNEUROSCI.2152-06.2006  0.55
2005 Waters J, Schaefer A, Sakmann B. Backpropagating action potentials in neurones: measurement, mechanisms and potential functions. Progress in Biophysics and Molecular Biology. 87: 145-70. PMID 15471594 DOI: 10.1016/J.Pbiomolbio.2004.06.009  0.505
2005 Broser PJ, Schulte R, Roth A, Helmchen F, Waters J, Lang S, Sakmann B, Wittum G. Nonlinear anisotropic diffusion filtering of three-dimensional image data from 2-photon microscopy Proceedings of Spie - the International Society For Optical Engineering. 5672: 44-69. DOI: 10.1117/12.593376  0.584
2004 Dittgen T, Nimmerjahn A, Komai S, Licznerski P, Waters J, Margrie TW, Helmchen F, Denk W, Brecht M, Osten P. Lentivirus-based genetic manipulations of cortical neurons and their optical and electrophysiological monitoring in vivo. Proceedings of the National Academy of Sciences of the United States of America. 101: 18206-11. PMID 15608064 DOI: 10.1073/Pnas.0407976101  0.781
2004 Waters J, Helmchen F. Boosting of action potential backpropagation by neocortical network activity in vivo. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 11127-36. PMID 15590929 DOI: 10.1523/JNEUROSCI.2933-04.2004  0.559
2004 Broser PJ, Schulte R, Lang S, Roth A, Helmchen F, Waters J, Sakmann B, Wittum G. Nonlinear anisotropic diffusion filtering of three-dimensional image data from two-photon microscopy. Journal of Biomedical Optics. 9: 1253-64. PMID 15574067 DOI: 10.1117/1.1806832  0.654
2004 Hasan MT, Friedrich RW, Euler T, Larkum ME, Giese G, Both M, Duebel J, Waters J, Bujard H, Griesbeck O, Tsien RY, Nagai T, Miyawaki A, Denk W. Functional fluorescent Ca2+ indicator proteins in transgenic mice under TET control. Plos Biology. 2: e163. PMID 15208716 DOI: 10.1371/Journal.Pbio.0020163  0.517
2004 Kim J, Dittgen T, Nimmerjahn A, Waters J, Pawlak V, Helmchen F, Schlesinger S, Seeburg PH, Osten P. Sindbis vector SINrep(nsP2S726): a tool for rapid heterologous expression with attenuated cytotoxicity in neurons. Journal of Neuroscience Methods. 133: 81-90. PMID 14757348 DOI: 10.1016/J.Jneumeth.2003.09.029  0.724
2003 Waters J, Larkum M, Sakmann B, Helmchen F. Supralinear Ca2+ influx into dendritic tufts of layer 2/3 neocortical pyramidal neurons in vitro and in vivo. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 8558-67. PMID 13679425 DOI: 10.1523/Jneurosci.23-24-08558.2003  0.665
2002 Helmchen F, Waters J. Ca2+ imaging in the mammalian brain in vivo. European Journal of Pharmacology. 447: 119-29. PMID 12151004 DOI: 10.1016/S0014-2999(02)01836-8  0.517
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