| Year |
Citation |
Score |
| 2016 |
Warner LR, Gatzeva-Topalova PZ, Doerner PA, Pardi A, Sousa MC. Flexibility in the Periplasmic Domain of BamA Is Important for Function. Structure (London, England : 1993). PMID 27989620 DOI: 10.1016/J.Str.2016.11.013 |
0.364 |
|
| 2015 |
Xiao Y, Warner LR, Latham MP, Ahn NG, Pardi A. Structure-Based Assignment of Ile, Leu, and Val Methyl Groups in the Active and Inactive Forms of the Mitogen-Activated Protein Kinase Extracellular Signal-Regulated Kinase 2. Biochemistry. 54: 4307-19. PMID 26132046 DOI: 10.1021/Acs.Biochem.5B00506 |
0.691 |
|
| 2015 |
Xiao Y, Liddle JC, Pardi A, Ahn NG. Dynamics of protein kinases: insights from nuclear magnetic resonance. Accounts of Chemical Research. 48: 1106-14. PMID 25803188 DOI: 10.1021/Acs.Accounts.5B00001 |
0.375 |
|
| 2014 |
Xiao Y, Lee T, Latham MP, Warner LR, Tanimoto A, Pardi A, Ahn NG. Phosphorylation releases constraints to domain motion in ERK2. Proceedings of the National Academy of Sciences of the United States of America. 111: 2506-11. PMID 24550275 DOI: 10.1073/Pnas.1318899111 |
0.693 |
|
| 2014 |
Dodevski I, Nucci NV, Valentine KG, Sidhu GK, O'Brien ES, Pardi A, Wand AJ. Optimized reverse micelle surfactant system for high-resolution NMR spectroscopy of encapsulated proteins and nucleic acids dissolved in low viscosity fluids. Journal of the American Chemical Society. 136: 3465-74. PMID 24495164 DOI: 10.1021/Ja410716W |
0.338 |
|
| 2013 |
Dallmann A, Simon B, Duszczyk MM, Kooshapur H, Pardi A, Bermel W, Sattler M. Efficient detection of hydrogen bonds in dynamic regions of RNA by sensitivity-optimized NMR pulse sequences. Angewandte Chemie (International Ed. in English). 52: 10487-90. PMID 23946052 DOI: 10.1002/Anie.201304391 |
0.436 |
|
| 2011 |
Warner LR, Varga K, Lange OF, Baker SL, Baker D, Sousa MC, Pardi A. Structure of the BamC two-domain protein obtained by Rosetta with a limited NMR data set. Journal of Molecular Biology. 411: 83-95. PMID 21624375 DOI: 10.1016/J.Jmb.2011.05.022 |
0.58 |
|
| 2010 |
Gatzeva-Topalova PZ, Warner LR, Pardi A, Sousa MC. Structure and flexibility of the complete periplasmic domain of BamA: the protein insertion machine of the outer membrane. Structure (London, England : 1993). 18: 1492-501. PMID 21070948 DOI: 10.1016/J.Str.2010.08.012 |
0.331 |
|
| 2010 |
Lee SW, Zhao L, Pardi A, Xia T. Ultrafast dynamics show that the theophylline and 3-methylxanthine aptamers employ a conformational capture mechanism for binding their ligands. Biochemistry. 49: 2943-51. PMID 20214401 DOI: 10.1021/Bi100106C |
0.473 |
|
| 2009 |
Grishaev A, Yao L, Ying J, Pardi A, Bax A. Chemical shift anisotropy of imino 15N nuclei in Watson-Crick base pairs from magic angle spinning liquid crystal NMR and nuclear spin relaxation. Journal of the American Chemical Society. 131: 9490-1. PMID 19537719 DOI: 10.1021/Ja903244S |
0.373 |
|
| 2009 |
Farjon J, Boisbouvier J, Schanda P, Pardi A, Simorre JP, Brutscher B. Longitudinal-relaxation-enhanced NMR experiments for the study of nucleic acids in solution. Journal of the American Chemical Society. 131: 8571-7. PMID 19485365 DOI: 10.1021/Ja901633Y |
0.464 |
|
| 2009 |
Latham MP, Zimmermann GR, Pardi A. NMR chemical exchange as a probe for ligand-binding kinetics in a theophylline-binding RNA aptamer. Journal of the American Chemical Society. 131: 5052-3. PMID 19317486 DOI: 10.1021/Ja900695M |
0.744 |
|
| 2009 |
Latham MP, Pardi A. Measurement of imino 1H-1H residual dipolar couplings in RNA. Journal of Biomolecular Nmr. 43: 121-9. PMID 19067179 DOI: 10.1007/S10858-008-9293-8 |
0.718 |
|
| 2008 |
Grishaev A, Ying J, Canny MD, Pardi A, Bax A. Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data. Journal of Biomolecular Nmr. 42: 99-109. PMID 18787959 DOI: 10.1007/S10858-008-9267-X |
0.395 |
|
| 2008 |
Douglas JT, Latham MP, Armstrong GS, Bendiak B, Pardi A. High-resolution pyrimidine- and ribose-specific 4D HCCH-COSY spectra of RNA using the filter diagonalization method. Journal of Biomolecular Nmr. 41: 209-19. PMID 18626775 DOI: 10.1007/S10858-008-9253-3 |
0.713 |
|
| 2008 |
Lee JH, Jucker F, Pardi A. Imino proton exchange rates imply an induced-fit binding mechanism for the VEGF165-targeting aptamer, Macugen. Febs Letters. 582: 1835-9. PMID 18485899 DOI: 10.1016/J.Febslet.2008.05.003 |
0.351 |
|
| 2008 |
Latham MP, Hanson P, Brown DJ, Pardi A. Comparison of alignment tensors generated for native tRNA(Val) using magnetic fields and liquid crystalline media. Journal of Biomolecular Nmr. 40: 83-94. PMID 18026844 DOI: 10.1007/S10858-007-9212-4 |
0.699 |
|
| 2007 |
Ying J, Grishaev A, Latham MP, Pardi A, Bax A. Magnetic field induced residual dipolar couplings of imino groups in nucleic acids from measurements at a single magnetic field. Journal of Biomolecular Nmr. 39: 91-6. PMID 17680332 DOI: 10.1007/S10858-007-9181-7 |
0.696 |
|
| 2007 |
Downey CD, Crisman RL, Randolph TW, Pardi A. Influence of hydrostatic pressure and cosolutes on RNA tertiary structure. Journal of the American Chemical Society. 129: 9290-1. PMID 17616193 DOI: 10.1021/Ja072179K |
0.428 |
|
| 2007 |
Lee JH, Pardi A. Thermodynamics and kinetics for base-pair opening in the P1 duplex of the Tetrahymena group I ribozyme. Nucleic Acids Research. 35: 2965-74. PMID 17439958 DOI: 10.1093/Nar/Gkm184 |
0.353 |
|
| 2007 |
Canny MD, Jucker FM, Pardi A. Efficient ligation of the Schistosoma hammerhead ribozyme. Biochemistry. 46: 3826-34. PMID 17319693 DOI: 10.1021/Bi062077R |
0.373 |
|
| 2006 |
Downey CD, Fiore JL, Stoddard CD, Hodak JH, Nesbitt DJ, Pardi A. Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker Biochemistry. 45: 3664-3673. PMID 16533049 DOI: 10.1021/Bi0520941 |
0.697 |
|
| 2005 |
Lee JH, Canny MD, De Erkenez A, Krilleke D, Ng YS, Shima DT, Pardi A, Jucker F. A therapeutic aptamer inhibits angiogenesis by specifically targeting the heparin binding domain of VEGF165. Proceedings of the National Academy of Sciences of the United States of America. 102: 18902-7. PMID 16357200 DOI: 10.1073/Pnas.0509069102 |
0.306 |
|
| 2005 |
Van Melckebeke H, Pardi A, Boisbouvier J, Simorre JP, Brutscher B. Resolution-enhanced base-type-edited HCN experiment for RNA. Journal of Biomolecular Nmr. 32: 263-71. PMID 16211480 DOI: 10.1007/S10858-005-8872-1 |
0.42 |
|
| 2005 |
Latham MP, Brown DJ, McCallum SA, Pardi A. NMR methods for studying the structure and dynamics of RNA. Chembiochem : a European Journal of Chemical Biology. 6: 1492-505. PMID 16138301 DOI: 10.1002/Cbic.200500123 |
0.767 |
|
| 2005 |
Hodak JH, Downey CD, Fiore JL, Pardi A, Nesbitt DJ. Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET. Proceedings of the National Academy of Sciences of the United States of America. 102: 10505-10. PMID 16024731 DOI: 10.1073/Pnas.0408645102 |
0.709 |
|
| 2005 |
Vermeulen A, McCallum SA, Pardi A. Comparison of the global structure and dynamics of native and unmodified tRNAval. Biochemistry. 44: 6024-33. PMID 15835891 DOI: 10.1021/Bi0473399 |
0.439 |
|
| 2004 |
Canny MD, Jucker FM, Kellogg E, Khvorova A, Jayasena SD, Pardi A. Fast cleavage kinetics of a natural hammerhead ribozyme. Journal of the American Chemical Society. 126: 10848-9. PMID 15339162 DOI: 10.1021/Ja046848V |
0.386 |
|
| 2003 |
Jucker FM, Phillips RM, McCallum SA, Pardi A. Role of a heterogeneous free state in the formation of a specific RNA-theophylline complex. Biochemistry. 42: 2560-7. PMID 12614150 DOI: 10.1021/Bi027103+ |
0.429 |
|
| 2003 |
McCallum SA, Pardi A. Refined solution structure of the iron-responsive element RNA using residual dipolar couplings. Journal of Molecular Biology. 326: 1037-50. PMID 12589752 DOI: 10.1016/S0022-2836(02)01431-6 |
0.459 |
|
| 2002 |
Bondensgaard K, Mollova ET, Pardi A. The global conformation of the hammerhead ribozyme determined using residual dipolar couplings. Biochemistry. 41: 11532-42. PMID 12269797 DOI: 10.1021/Bi012167Q |
0.436 |
|
| 2001 |
Sibille N, Pardi A, Simorre JP, Blackledge M. Refinement of local and long-range structural order in theophylline-binding RNA using (13)C-(1)H residual dipolar couplings and restrained molecular dynamics. Journal of the American Chemical Society. 123: 12135-46. PMID 11734011 DOI: 10.1021/Ja011646+ |
0.474 |
|
| 2000 |
Hansen MR, Hanson P, Pardi A. Pf1 filamentous phage as an alignment tool for generating local and global structural information in nucleic acids. Journal of Biomolecular Structure & Dynamics. 17: 365-9. PMID 22607445 DOI: 10.1080/07391102.2000.10506642 |
0.401 |
|
| 2000 |
Hoogstraten CG, Wank JR, Pardi A. Active site dynamics in the lead-dependent ribozyme. Biochemistry. 39: 9951-8. PMID 10933815 DOI: 10.1021/Bi0007627 |
0.729 |
|
| 2000 |
Mollova ET, Pardi A. NMR solution structure determination of RNAs. Current Opinion in Structural Biology. 10: 298-302. PMID 10851189 DOI: 10.1016/S0959-440X(00)00087-7 |
0.438 |
|
| 2000 |
Zimmermann GR, Wick CL, Shields TP, Jenison RD, Pardi A. Molecular interactions and metal binding in the theophylline-binding core of an RNA aptamer. Rna (New York, N.Y.). 6: 659-67. PMID 10836787 DOI: 10.1017/S1355838200000169 |
0.427 |
|
| 2000 |
Hansen MR, Hanson P, Pardi A. Filamentous bacteriophage for aligning RNA, DNA, and proteins for measurement of nuclear magnetic resonance dipolar coupling interactions. Methods in Enzymology. 317: 220-40. PMID 10829283 DOI: 10.1016/S0076-6879(00)17017-X |
0.467 |
|
| 2000 |
Mollova ET, Hansen MR, Pardi A. Global structure of RNA determined with residual dipolar couplings [28] Journal of the American Chemical Society. 122: 11561-11562. DOI: 10.1021/Ja0027822 |
0.453 |
|
| 2000 |
Vermeulen A, Zhou H, Pardi A. Determining DNA global structure and DNA bending by application of NMR residual dipolar couplings Journal of the American Chemical Society. 122: 9638-9647. DOI: 10.1021/Ja001919L |
0.426 |
|
| 2000 |
Boisbouvier J, Brutscher B, Pardi A, Marion D, Simorre JP. NMR determination of sugar puckers in nucleic acids from CSA-dipolar cross-correlated relaxation [8] Journal of the American Chemical Society. 122: 6779-6780. DOI: 10.1021/Ja000976B |
0.331 |
|
| 1999 |
Zhou H, Vermeulen A, Jucker FM, Pardi A. Incorporating residual dipolar couplings into the NMR solution structure determination of nucleic acids. Biopolymers. 52: 168-80. PMID 11295749 DOI: 10.1002/1097-0282(1999)52:4<168::Aid-Bip1002>3.0.Co;2-7 |
0.424 |
|
| 1999 |
Shields TP, Mollova E, Ste Marie L, Hansen MR, Pardi A. High-performance liquid chromatography purification of homogenous-length RNA produced by trans cleavage with a hammerhead ribozyme. Rna (New York, N.Y.). 5: 1259-67. PMID 10496226 DOI: 10.1017/S1355838299990945 |
0.401 |
|
| 1999 |
Hansen MR, Simorre JP, Hanson P, Mokler V, Bellon L, Beigelman L, Pardi A. Identification and characterization of a novel high affinity metal-binding site in the hammerhead ribozyme. Rna (New York, N.Y.). 5: 1099-104. PMID 10445883 DOI: 10.1017/S1355838299990738 |
0.34 |
|
| 1998 |
Hansen MR, Mueller L, Pardi A. Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions. Nature Structural Biology. 5: 1065-74. PMID 9846877 DOI: 10.1038/4176 |
0.411 |
|
| 1998 |
Hoogstraten CG, Legault P, Pardi A. NMR solution structure of the lead-dependent ribozyme: evidence for dynamics in RNA catalysis. Journal of Molecular Biology. 284: 337-50. PMID 9813122 DOI: 10.1006/Jmbi.1998.2182 |
0.755 |
|
| 1998 |
Legault P, Hoogstraten CG, Metlitzky E, Pardi A. Order, dynamics and metal-binding in the lead-dependent ribozyme. Journal of Molecular Biology. 284: 325-35. PMID 9813121 DOI: 10.1006/Jmbi.1998.2181 |
0.746 |
|
| 1998 |
Hoogstraten CG, Pardi A. Measurement of carbon-phosphorus J coupling constants in RNA using spin-echo difference constant-time HCCH-COSY. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 133: 236-40. PMID 9654495 DOI: 10.1006/Jmre.1998.1457 |
0.733 |
|
| 1998 |
Zimmermann GR, Shields TP, Jenison RD, Wick CL, Pardi A. A semiconserved residue inhibits complex formation by stabilizing interactions in the free state of a theophylline-binding RNA. Biochemistry. 37: 9186-92. PMID 9636066 DOI: 10.1021/Bi980082S |
0.459 |
|
| 1998 |
Hoogstraten CG, Pardi A. Improved distance analysis in RNA using network-editing techniques for overcoming errors due to spin diffusion. Journal of Biomolecular Nmr. 11: 85-95. PMID 9566314 DOI: 10.1023/A:1008239625802 |
0.728 |
|
| 1998 |
Simorre JP, Legault P, Baidya N, Uhlenbeck OC, Maloney L, Wincott F, Usman N, Beigelman L, Pardi A. Structural variation induced by different nucleotides at the cleavage site of the hammerhead ribozyme. Biochemistry. 37: 4034-44. PMID 9521724 DOI: 10.1021/Bi972493Z |
0.624 |
|
| 1998 |
Hansen MR, Rance M, Pardi A. Observation of long-range 1H-1H distances in solution by dipolar coupling interactions [15] Journal of the American Chemical Society. 120: 11210-11211. DOI: 10.1021/Ja9829665 |
0.552 |
|
| 1998 |
Brutscher B, Boisbouvier J, Pardi A, Marion D, Simorre JP. Improved sensitivity and resolution in 1H-13C NMR experiments of RNA Journal of the American Chemical Society. 120: 11845-11851. DOI: 10.1021/Ja982853L |
0.458 |
|
| 1997 |
Addess KJ, Basilion JP, Klausner RD, Rouault TA, Pardi A. Structure and dynamics of the iron responsive element RNA: implications for binding of the RNA by iron regulatory binding proteins. Journal of Molecular Biology. 274: 72-83. PMID 9398517 DOI: 10.1006/Jmbi.1997.1377 |
0.434 |
|
| 1997 |
Burke DH, Hoffman DC, Brown A, Hansen M, Pardi A, Gold L. RNA aptamers to the peptidyl transferase inhibitor chloramphenicol. Chemistry & Biology. 4: 833-43. PMID 9384530 DOI: 10.1016/S1074-5521(97)90116-2 |
0.406 |
|
| 1997 |
Uhlenbeck OC, Pardi A, Feigon J. RNA structure comes of age. Cell. 90: 833-40. PMID 9298895 DOI: 10.1016/S0092-8674(00)80348-7 |
0.593 |
|
| 1997 |
Zimmermann GR, Jenison RD, Wick CL, Simorre JP, Pardi A. Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA. Nature Structural Biology. 4: 644-9. PMID 9253414 DOI: 10.1038/Nsb0897-644 |
0.458 |
|
| 1997 |
Simorre JP, Legault P, Hangar AB, Michiels P, Pardi A. A conformational change in the catalytic core of the hammerhead ribozyme upon cleavage of an RNA substrate. Biochemistry. 36: 518-25. PMID 9012667 DOI: 10.1021/Bi9620520 |
0.426 |
|
| 1997 |
Legault P, Pardi A. Unusual dynamics and pK(a) shift at the active site of a lead-dependent ribozyme Journal of the American Chemical Society. 119: 6621-6628. DOI: 10.1021/Ja9640051 |
0.456 |
|
| 1996 |
Jucker FM, Heus HA, Yip PF, Moors EH, Pardi A. A network of heterogeneous hydrogen bonds in GNRA tetraloops. Journal of Molecular Biology. 264: 968-80. PMID 9000624 DOI: 10.1006/Jmbi.1996.0690 |
0.444 |
|
| 1996 |
Baeyens KJ, De Bondt HL, Pardi A, Holbrook SR. A curved RNA helix incorporating an internal loop with G.A and A.A non-Watson-Crick base pairing. Proceedings of the National Academy of Sciences of the United States of America. 93: 12851-5. PMID 8917508 DOI: 10.1073/Pnas.93.23.12851 |
0.443 |
|
| 1996 |
Simorre JP, Zimmermann GR, Mueller L, Pardi A. Correlation of the guanosine exchangeable and nonexchangeable base protons in 13C-/15N-labeled RNA with an HNC-TOCSY-CH experiment. Journal of Biomolecular Nmr. 7: 153-6. PMID 8616271 DOI: 10.1007/Bf00203825 |
0.458 |
|
| 1996 |
Simorre JP, Zimmermann GR, Mueller L, Pardi A. Triple-resonance experiments for assignment of adenine base resonances in 13C/15N-labeled RNA Journal of the American Chemical Society. 118: 5316-5317. DOI: 10.1021/Ja954208+ |
0.401 |
|
| 1995 |
Pardi A. Multidimensional heteronuclear NMR experiments for structure determination of isotopically labeled RNA. Methods in Enzymology. 261: 350-80. PMID 8569503 DOI: 10.1016/S0076-6879(95)61017-0 |
0.455 |
|
| 1995 |
Simorre JP, Zimmermann GR, Pardi A, Farmer BT, Mueller L. Triple resonance HNCCCH experiments for correlating exchangeable and nonexchangeable cytidine and uridine base protons in RNA. Journal of Biomolecular Nmr. 6: 427-32. PMID 8563469 DOI: 10.1007/Bf00197641 |
0.384 |
|
| 1995 |
Legault P, Jucker FM, Pardi A. Improved measurement of 13C, 31P J coupling constants in isotopically labeled RNA. Febs Letters. 362: 156-60. PMID 7720863 DOI: 10.1016/0014-5793(95)00232-X |
0.391 |
|
| 1995 |
Jucker FM, Pardi A. GNRA tetraloops make a U-turn. Rna (New York, N.Y.). 1: 219-22. PMID 7585251 |
0.303 |
|
| 1995 |
Jucker FM, Pardi A. Solution structure of the CUUG hairpin loop: a novel RNA tetraloop motif. Biochemistry. 34: 14416-27. PMID 7578046 DOI: 10.1021/Bi00044A019 |
0.491 |
|
| 1995 |
Zimmermann GR, Legault P, Selsted ME, Pardi A. Solution structure of bovine neutrophil beta-defensin-12: the peptide fold of the beta-defensins is identical to that of the classical defensins. Biochemistry. 34: 13663-71. PMID 7577957 DOI: 10.1021/Bi00041A048 |
0.317 |
|
| 1995 |
Mueller L, Legault P, Pardi A. Improved RNA structure determination by detection of NOE contacts to exchange-broadened amino protons Journal of the American Chemical Society. 117: 11043-11048. DOI: 10.1021/Ja00150A001 |
0.454 |
|
| 1994 |
Skalicky JJ, Selsted ME, Pardi A. Structure and dynamics of the neutrophil defensins NP-2, NP-5, and HNP-1: NMR studies of amide hydrogen exchange kinetics. Proteins. 20: 52-67. PMID 7824523 DOI: 10.1002/Prot.340200107 |
0.354 |
|
| 1994 |
Aboul-ela F, Nikonowicz EP, Pardi A. Distinguishing between duplex and hairpin forms of RNA by 15N-1H heteronuclear NMR. Febs Letters. 347: 261-4. PMID 7518398 DOI: 10.1016/0014-5793(94)00564-8 |
0.467 |
|
| 1994 |
Legault P, Pardi A. 31P chemical shift as a probe of structural motifs in RNA. Journal of Magnetic Resonance. Series B. 103: 82-6. PMID 7511031 DOI: 10.1006/Jmrb.1994.1012 |
0.43 |
|
| 1994 |
Farmer BT, Müller L, Nikonowicz EP, Pardi A. Unambiguous through-bond sugar-to-base correlations for purines in 13C,15N-labeled nucleic acids: the HsCsNb,HsCs(N)bCb, and HbNbCb experiments. Journal of Biomolecular Nmr. 4: 129-33. PMID 7510555 DOI: 10.1007/Bf00178341 |
0.358 |
|
| 1994 |
Jenison RD, Gill SC, Pardi A, Polisky B. High-resolution molecular discrimination by RNA. Science (New York, N.Y.). 263: 1425-9. PMID 7510417 DOI: 10.1126/Science.7510417 |
0.43 |
|
| 1994 |
Legault P, Pardi A. In situ probing of adenine protonation in RNA by 13C NMR Journal of the American Chemical Society. 116: 8390-8391. DOI: 10.1021/Ja00097A066 |
0.464 |
|
| 1994 |
Legault P, Farmer BT, Mueller L, Pardi A. Through-bond correlation of adenine protons in a 13C-labeled ribozyme Journal of the American Chemical Society. 116: 2203-2204. DOI: 10.1021/Ja00084A094 |
0.324 |
|
| 1993 |
Nikonowicz EP, Pardi A. An efficient procedure for assignment of the proton, carbon and nitrogen resonances in 13C/15N labeled nucleic acids. Journal of Molecular Biology. 232: 1141-56. PMID 8396648 DOI: 10.1006/Jmbi.1993.1466 |
0.442 |
|
| 1993 |
Skalicky JJ, Metzler WJ, Ciesla DJ, Galdes A, Pardi A. Solution structure of the calcium channel antagonist omega-conotoxin GVIA. Protein Science : a Publication of the Protein Society. 2: 1591-603. PMID 8251934 DOI: 10.1002/Pro.5560021005 |
0.348 |
|
| 1993 |
Pardi A, Legault P, Nikonowicz EP. Structural studies of catalytic RNAs by heteronuclear multi-dimensional NMR. Nucleic Acids Symposium Series. 116. PMID 8247730 |
0.361 |
|
| 1993 |
Farmer BT, Muller L, Nikonowicz EP, Pardi A. Unambiguous resonance assignments in carbon-13, nitrogen-15-labeled nucleic acids by 3D triple-resonance NMR Journal of the American Chemical Society. 115: 11040-11041. DOI: 10.1021/Ja00076A092 |
0.32 |
|
| 1992 |
Hertel KJ, Pardi A, Uhlenbeck OC, Koizumi M, Ohtsuka E, Uesugi S, Cedergren R, Eckstein F, Gerlach WL, Hodgson R. Numbering system for the hammerhead. Nucleic Acids Research. 20: 3252. PMID 1620624 DOI: 10.1093/Nar/20.12.3252 |
0.461 |
|
| 1992 |
Pardi A, Zhang XL, Selsted ME, Skalicky JJ, Yip PF. NMR studies of defensin antimicrobial peptides. 2. Three-dimensional structures of rabbit NP-2 and human HNP-1. Biochemistry. 31: 11357-64. PMID 1445873 DOI: 10.1021/Bi00161A013 |
0.35 |
|
| 1992 |
Zhang XL, Selsted ME, Pardi A. NMR studies of defensin antimicrobial peptides. 1. Resonance assignment and secondary structure determination of rabbit NP-2 and human HNP-1. Biochemistry. 31: 11348-56. PMID 1445872 DOI: 10.1021/Bi00161A012 |
0.35 |
|
| 1992 |
Nikonowicz EP, Sirr A, Legault P, Jucker FM, Baer LM, Pardi A. Preparation of 13C and 15N labelled RNAs for heteronuclear multi-dimensional NMR studies. Nucleic Acids Research. 20: 4507-13. PMID 1383927 DOI: 10.1093/Nar/20.17.4507 |
0.451 |
|
| 1992 |
Nikonowicz EP, Pardi A. Three-dimensional heteronuclear NMR studies of RNA. Nature. 355: 184-6. PMID 1370345 DOI: 10.1038/355184A0 |
0.495 |
|
| 1992 |
Pardi A, Nikonowicz EP. Simple procedure for resonance assignment of the sugar protons in carbon-13 labeled RNAs Journal of the American Chemical Society. 114: 9202-9203. DOI: 10.1021/Ja00049A070 |
0.393 |
|
| 1992 |
Nikonowicz EP, Pardi A. Application of four-dimensional heteronuclear NMR to the structure determination of a uniformly 13C labeled RNA Journal of the American Chemical Society. 114: 1082-1083. DOI: 10.1021/Ja00029A043 |
0.453 |
|
| 1992 |
Pardi A. Isotope labelling for NMR studies of biomolecules Current Opinion in Structural Biology. 2: 832-835. DOI: 10.1016/0959-440X(92)90107-I |
0.354 |
|
| 1991 |
Heus HA, Pardi A. Nuclear magnetic resonance studies of the hammerhead ribozyme domain. Secondary structure formation and magnesium ion dependence. Journal of Molecular Biology. 217: 113-24. PMID 1988674 DOI: 10.1016/0022-2836(91)90615-D |
0.414 |
|
| 1991 |
Huang LH, Cheng H, Pardi A, Tam JP, Sweeney WV. Sequence-specific 1H NMR assignments, secondary structure, and location of the calcium binding site in the first epidermal growth factor like domain of blood coagulation factor IX. Biochemistry. 30: 7402-9. PMID 1854745 DOI: 10.1021/Bi00244A006 |
0.326 |
|
| 1991 |
Heus HA, Pardi A. Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops. Science (New York, N.Y.). 253: 191-4. PMID 1712983 DOI: 10.1126/Science.1712983 |
0.45 |
|
| 1991 |
Heus HA, Pardi A. Novel proton NMR assignment procedure for RNA duplexes Journal of the American Chemical Society. 113: 4360-4361. DOI: 10.1021/Ja00011A066 |
0.454 |
|
| 1990 |
Kominos D, Bassolino DA, Levy RM, Pardi A. Analysis of side-chain conformational distributions in neutrophil peptide-5 NMR structures. Biopolymers. 29: 1807-22. PMID 2207287 DOI: 10.1002/Bip.360291412 |
0.362 |
|
| 1990 |
Heus HA, Uhlenbeck OC, Pardi A. Sequence-dependent structural variations of hammerhead RNA enzymes. Nucleic Acids Research. 18: 1103-8. PMID 2181399 DOI: 10.1093/Nar/18.5.1103 |
0.622 |
|
| 1990 |
Metzler WJ, Wang C, Kitchen DB, Levy RM, Pardi A. Determining local conformational variations in DNA. Nuclear magnetic resonance structures of the DNA duplexes d(CGCCTAATCG) and d(CGTCACGCGC) generated using back-calculation of the nuclear Overhauser effect spectra, a distance geometry algorithm and constrained molecular dynamics. Journal of Molecular Biology. 214: 711-36. PMID 2167379 DOI: 10.1016/0022-2836(90)90288-W |
0.42 |
|
| 1989 |
Metzler WJ, Hare DR, Pardi A. Limited sampling of conformational space by the distance geometry algorithm: implications for structures generated from NMR data. Biochemistry. 28: 7045-52. PMID 2819047 DOI: 10.1021/Bi00443A040 |
0.343 |
|
| 1989 |
Pardi A, Galdes A, Florance J, Maniconte D. Solution structures of alpha-conotoxin G1 determined by two-dimensional NMR spectroscopy. Biochemistry. 28: 5494-501. PMID 2775719 DOI: 10.1021/Bi00439A026 |
0.405 |
|
| 1989 |
Levy RM, Bassolino DA, Kitchen DB, Pardi A. Solution structures of proteins from NMR data and modeling: alternative folds for neutrophil peptide 5. Biochemistry. 28: 9361-72. PMID 2611235 DOI: 10.1021/Bi00450A017 |
0.37 |
|
| 1988 |
Pardi A, Hare DR, Wang C. Determination of DNA structures by NMR and distance geometry techniques: a computer simulation. Proceedings of the National Academy of Sciences of the United States of America. 85: 8785-9. PMID 3194389 DOI: 10.1073/Pnas.85.23.8785 |
0.391 |
|
| 1988 |
Pardi A, Hare DR, Selsted ME, Morrison RD, Bassolino DA, Bach AC. Solution structures of the rabbit neutrophil defensin NP-5. Journal of Molecular Biology. 201: 625-36. PMID 2843652 DOI: 10.1016/0022-2836(88)90643-2 |
0.356 |
|
| 1988 |
Bassolino DA, Hirata F, Kitchen DB, Kominos D, Pardi A, Levy RM. Determination of Protein Structures in Solution Using Nmr Data and Impact The International Journal of Supercomputing Applications. 2: 41-61. DOI: 10.1177/109434208800200204 |
0.365 |
|
| 1987 |
Bach AC, Selsted ME, Pardi A. Two-dimensional NMR studies of the antimicrobial peptide NP-5. Biochemistry. 26: 4389-97. PMID 3663594 DOI: 10.1021/Bi00388A030 |
0.36 |
|
| 1987 |
Wang C, Pardi A. NMR spectra of exchangeable protons using uniform excitation solvent suppression pulse sequences Journal of Magnetic Resonance (1969). 71: 154-158. DOI: 10.1016/0022-2364(87)90138-7 |
0.312 |
|
| 1984 |
Pardi A, Billeter M, Wüthrich K. Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure. Journal of Molecular Biology. 180: 741-51. PMID 6084720 DOI: 10.1016/0022-2836(84)90035-4 |
0.394 |
|
| 1984 |
McCord EF, Morden KM, Pardi A, Tinoco I, Boxer SG. Chemically induced dynamic nuclear polarization studies of guanosine in nucleotides, dinucleotides, and oligonucleotides Biochemistry. 23: 1926-1934. DOI: 10.1021/Bi00304A006 |
0.581 |
|
| 1983 |
Pardi A, Morden KM, Patel DJ, Tinoco I. Kinetics for exchange of the imino protons of the d(C-G-C-G-A-A-T-T-C-G-C-G) double helix in complexes with the antibiotics netropsin and/or actinomycin. Biochemistry. 22: 1107-13. PMID 6301539 DOI: 10.1021/Bi00274A018 |
0.551 |
|
| 1983 |
Pardi A, Wagner G, Wüthrich K. Protein conformation and proton nuclear-magnetic-resonance chemical shifts. European Journal of Biochemistry / Febs. 137: 445-54. PMID 6198174 DOI: 10.1111/J.1432-1033.1983.Tb07848.X |
0.611 |
|
| 1983 |
Wagner G, Pardi A, Wuethrich K. Hydrogen bond length and proton NMR chemical shifts in proteins Journal of the American Chemical Society. 105: 5948-5949. DOI: 10.1021/Ja00356A056 |
0.469 |
|
| 1983 |
Pardi A, Walker R, Rapoport H, Wider G, Wuethrich K. Sequential assignments for the hydrogen and phosphorus-31 atoms in the backbone of oligonucleotides by two-dimensional nuclear magnetic resonance Journal of the American Chemical Society. 105: 1652-1653. DOI: 10.1021/Ja00344A039 |
0.328 |
|
| 1983 |
Wagner G, Pardi A, Wüthrich K. Hydrogen bond length and 1H NMR chemical shifts in proteins Journal of the American Chemical Society. 105: 5948-5949. |
0.414 |
|
| 1982 |
Dahl KS, Pardi A, Tinoco I. Structural effects on the circular dichroism of ethidium ion-nucleic acid complexes. Biochemistry. 21: 2730-7. PMID 6953980 DOI: 10.1021/Bi00540A024 |
0.51 |
|
| 1982 |
Pardi A, Morden KM, Patel DJ, Tinoco I. Kinetics for exchange of imino protons in the d(C-G-C-G-A-A-T-T-C-G-C-G) double helix and in two similar helices that contain a G . T base pair, d(C-G-T-G-A-A-T-T-C-G-C-G), and an extra adenine, d(C-G-C-A-G-A-A-T-T-C-G-C-G). Biochemistry. 21: 6567-74. PMID 6295469 DOI: 10.1021/Bi00268A038 |
0.523 |
|
| 1982 |
Patel DJ, Pardi A, Itakura K. DNA conformation, dynamics, and interactions in solution Science. 216: 581-590. PMID 6280281 DOI: 10.1126/Science.6280281 |
0.451 |
|
| 1982 |
Pardi A, Tinoco I. Kinetics for exchange of imino protons in deoxyribonucleic acid, ribonucleic acid, and hybrid oligonucleotide helices. Biochemistry. 21: 4686-93. PMID 6182905 DOI: 10.1021/Bi00262A026 |
0.607 |
|
| 1981 |
Pardi A, Martin FH, Tinoco I. Comparative study of ribonucleotide, deoxyribonucleotide, and hybrid oligonucleotide helices by nuclear magnetic resonance Biochemistry. 20: 3986-3996. PMID 7284305 DOI: 10.1021/Bi00517A007 |
0.593 |
|
| 1981 |
Tinoco I, Martin FH, Nelson JW, Pardi A. Mismatched bases in nucleic acids: their effects on structures and stability Die Makromolekulare Chemie. 4: 143-153. DOI: 10.1002/Macp.1981.020041981111 |
0.595 |
|
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