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Shawn M. Lyons, Ph.D. - Publications

Affiliations: 
Biology University of North Carolina, Chapel Hill, Chapel Hill, NC 
Area:
RNA Biology
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Bhatter N, Advani VM, Takenaka Y, Lyons SM, Akiyama Y, Anderson PJ, Ivanov P. Repurposing tRNA isodecoders for non-canonical functions via tRNA cleavage. Biorxiv : the Preprint Server For Biology. PMID 39282440 DOI: 10.1101/2024.09.04.611212  0.359
2024 Leśniczak-Staszak M, Pietras P, Ruciński M, Johnston R, Sowiński M, Andrzejewska M, Nowicki M, Gowin E, Lyons SM, Ivanov P, Szaflarski W. Stress granule-mediated sequestration of EGR1 mRNAs correlates with lomustine-induced cell death prevention. Journal of Cell Science. 137. PMID 38940347 DOI: 10.1242/jcs.261825  0.32
2023 Nelson EV, Ross SJ, Olejnik J, Hume AJ, Deeney DJ, King E, Grimins AO, Lyons SM, Cifuentes D, Mühlberger E. The 3' untranslated regions of Ebola virus mRNAs contain AU-rich elements involved in post-transcriptional stabilization and decay. The Journal of Infectious Diseases. PMID 37551415 DOI: 10.1093/infdis/jiad312  0.301
2021 Szaflarski W, Leśniczak-Staszak M, Sowiński M, Ojha S, Aulas A, Dave D, Malla S, Anderson P, Ivanov P, Lyons SM. Early rRNA processing is a stress-dependent regulatory event whose inhibition maintains nucleolar integrity. Nucleic Acids Research. PMID 34928368 DOI: 10.1093/nar/gkab1231  0.325
2021 Floro J, Dai A, Metzger A, Mora-Martin A, Ganem NJ, Cifuentes D, Wu CS, Dalal J, Lyons SM, Labadorf A, Flynn RL. SDE2 is an essential gene required for ribosome biogenesis and the regulation of alternative splicing. Nucleic Acids Research. PMID 34365507 DOI: 10.1093/nar/gkab647  0.375
2020 Mineo M, Lyons SM, Zdioruk M, von Spreckelsen N, Ferrer-Luna R, Ito H, Alayo QA, Kharel P, Giantini Larsen A, Fan WY, Auduong S, Grauwet K, Passaro C, Khalsa JK, Shah K, et al. Tumor Interferon Signaling Is Regulated by a lncRNA INCR1 Transcribed from the PD-L1 Locus. Molecular Cell. PMID 32504554 DOI: 10.1016/J.Molcel.2020.05.015  0.305
2020 Ojha S, Malla S, Lyons SM. snoRNPs: Functions in Ribosome Biogenesis. Biomolecules. 10. PMID 32443616 DOI: 10.3390/biom10050783  0.341
2020 Lyons SM, Kharel P, Akiyama Y, Ojha S, Dave D, Tsvetkov V, Merrick W, Ivanov P, Anderson P. eIF4G has intrinsic G-quadruplex binding activity that is required for tiRNA function. Nucleic Acids Research. PMID 32374873 DOI: 10.1093/Nar/Gkaa336  0.463
2020 Lyons SM, Kharel P, Akiyama Y, Ojha S, Dave D, Tsvetkov V, Merrick W, Ivanov P, Anderson P. eIF4G has intrinsic G-quadruplex binding activity that is required for tiRNA function. Nucleic Acids Research. PMID 32374873 DOI: 10.1093/nar/gkaa336  0.379
2020 Smith JA, Curry EG, Blue RE, Roden C, Dundon SER, Rodríguez-Vargas A, Jordan DC, Chen X, Lyons SM, Crutchley J, Anderson P, Horb ME, Gladfelter AS, Giudice J. FXR1 splicing is important for muscle development and biomolecular condensates in muscle cells. The Journal of Cell Biology. 219. PMID 32328638 DOI: 10.1083/Jcb.201911129  0.37
2020 Sanders DW, Kedersha N, Lee DSW, Strom AR, Drake V, Riback JA, Bracha D, Eeftens JM, Iwanicki A, Wang A, Wei MT, Whitney G, Lyons SM, Anderson P, Jacobs WM, et al. Competing Protein-RNA Interaction Networks Control Multiphase Intracellular Organization. Cell. 181: 306-324.e28. PMID 32302570 DOI: 10.1016/J.Cell.2020.03.050  0.306
2020 Sanders DW, Kedersha N, Lee DSW, Strom AR, Drake V, Riback JA, Bracha D, Eeftens JM, Iwanicki A, Wang A, Wei MT, Whitney G, Lyons SM, Anderson P, Jacobs WM, et al. Competing Protein-RNA Interaction Networks Control Multiphase Intracellular Organization. Cell. 181: 306-324.e28. PMID 32302570 DOI: 10.1016/J.Cell.2020.03.050  0.306
2020 Mineo M, Lyons SM, Ferrer-Luna R, Ito H, Spreckelsen Nv, Alayo QA, Khalsa JK, Shah K, Ligon KL, Beroukhim R, Ivanov P, Anderson PJ, Nakashima H, Lawler SE, Chiocca EA. Abstract B46: The long noncoding RNA INCA1 is a novel regulator of PD-L1 expression in tumors Cancer Immunology Research. 8. DOI: 10.1158/2326-6074.Tumimm19-B46  0.319
2019 Gámbaro F, Li Calzi M, Fagúndez P, Costa B, Greif G, Mallick E, Lyons S, Ivanov P, Witwer K, Cayota A, Tosar JP. Stable tRNA halves can be sorted into extracellular vesicles and delivered to recipient cells in a concentration-dependent manner. Rna Biology. 1-15. PMID 31885318 DOI: 10.1080/15476286.2019.1708548  0.416
2018 Lyons SM, Fay MM, Ivanov P. The role of RNA modifications in the regulation of tRNA cleavage. Febs Letters. PMID 30058219 DOI: 10.1002/1873-3468.13205  0.463
2017 Lyons SM, Gudanis D, Coyne SM, Gdaniec Z, Ivanov P. Author Correction: Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs. Nature Communications. 8: 2020. PMID 29209051 DOI: 10.1038/S41467-017-02140-9  0.33
2017 Lyons SM, Gudanis D, Coyne SM, Gdaniec Z, Ivanov P. Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs. Nature Communications. 8: 1127. PMID 29066746 DOI: 10.1038/S41467-017-01278-W  0.48
2017 Fay MM, Lyons SM, Ivanov P. RNA G-quadruplexes in biology: Principles and molecular mechanisms. Journal of Molecular Biology. PMID 28554731 DOI: 10.1016/J.Jmb.2017.05.017  0.39
2017 Aulas A, Fay MM, Lyons SM, Achorn CA, Kedersha N, Anderson P, Ivanov P. Stress-specific differences in assembly and composition of stress granules and related foci. Journal of Cell Science. PMID 28096475 DOI: 10.1242/Jcs.199240  0.339
2016 Lyons SM, Fay MM, Akiyama Y, Anderson P, Ivanov P. RNA Biology of Angiogenin: Current State and Perspectives. Rna Biology. 0. PMID 28010172 DOI: 10.1080/15476286.2016.1272746  0.4
2016 Lyons SM, Anderson P. RNA-Seeded Functional Amyloids Balance Growth and Survival. Developmental Cell. 39: 131-132. PMID 27780035 DOI: 10.1016/J.Devcel.2016.10.005  0.341
2016 Lyons SM, Cunningham CH, Welch JD, Groh B, Guo AY, Wei B, Whitfield ML, Xiong Y, Marzluff WF. A subset of replication-dependent histone mRNAs are expressed as polyadenylated RNAs in terminally differentiated tissues. Nucleic Acids Research. PMID 27402160 DOI: 10.1093/Nar/Gkw620  0.566
2016 Mineo M, Ricklefs F, Rooj AK, Lyons SM, Ivanov P, Ansari KI, Nakano I, Chiocca EA, Godlewski J, Bronisz A. The Long Non-coding RNA HIF1A-AS2 Facilitates the Maintenance of Mesenchymal Glioblastoma Stem-like Cells in Hypoxic Niches. Cell Reports. PMID 27264189 DOI: 10.1016/J.Celrep.2016.05.018  0.379
2016 Lyons SM, Achorn C, Kedersha NL, Anderson PJ, Ivanov P. YB-1 regulates tiRNA-induced Stress Granule formation but not translational repression. Nucleic Acids Research. PMID 27174937 DOI: 10.1093/Nar/Gkw418  0.433
2016 Kedersha N, Panas MD, Achorn CA, Lyons S, Tisdale S, Hickman T, Thomas M, Lieberman J, McInerney GM, Ivanov P, Anderson P. G3BP-Caprin1-USP10 complexes mediate stress granule condensation and associate with 40S subunits. The Journal of Cell Biology. 212: 845-60. PMID 27022092 DOI: 10.1083/Jcb.201508028  0.383
2016 Mineo M, Ricklefs F, Rooj A, Lyons SM, Ivanov P, Chiocca EA, Godlewski J, Bronisz A. Abstract 1000: The long non-coding RNA HIF1A-AS2 regulates mesenchymal glioma stem cell tumorigenicity Cancer Research. 76: 1000-1000. DOI: 10.1158/1538-7445.Am2016-1000  0.46
2015 Brooks L, Lyons SM, Mahoney JM, Welch JD, Liu Z, Marzluff WF, Whitfield ML. A multiprotein occupancy map of the mRNP on the 3' end of histone mRNAs. Rna (New York, N.Y.). PMID 26377992 DOI: 10.1261/Rna.053389.115  0.61
2015 Terzo EA, Lyons SM, Poulton JS, Temple BR, Marzluff WF, Duronio RJ. Distinct self-interaction domains promote Multi Sex Combs accumulation in and formation of the Drosophila histone locus body. Molecular Biology of the Cell. 26: 1559-74. PMID 25694448 DOI: 10.1091/Mbc.E14-10-1445  0.554
2014 Lyons SM, Ricciardi AS, Guo AY, Kambach C, Marzluff WF. The C-terminal extension of Lsm4 interacts directly with the 3' end of the histone mRNP and is required for efficient histone mRNA degradation. Rna (New York, N.Y.). 20: 88-102. PMID 24255165 DOI: 10.1261/Rna.042531.113  0.596
2013 Su W, Slepenkov SV, Slevin MK, Lyons SM, Ziemniak M, Kowalska J, Darzynkiewicz E, Jemielity J, Marzluff WF, Rhoads RE. mRNAs containing the histone 3′ stem-loop are degraded primarily by decapping mediated by oligouridylation of the 3′ end Rna. 19: 1-16. PMID 23188809 DOI: 10.1261/Rna.034470.112  0.583
2012 Martin L, Meier M, Lyons SM, Sit RV, Marzluff WF, Quake SR, Chang HY. Systematic reconstruction of RNA functional motifs with high-throughput microfluidics Nature Methods. 9: 1192-1194. PMID 23142872 DOI: 10.1038/Nmeth.2225  0.562
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