Gregory S. Chirikjian - Publications

Affiliations: 
Mechanical Engineering Johns Hopkins University, Baltimore, MD 
Area:
Computational structural biology
Website:
http://me.jhu.edu/faculty/gregory-s-chirikjian/

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Zhang HK, Cheng A, Kim Y, Ma Q, Chirikjian GS, Boctor EM. Phantom with multiple active points for ultrasound calibration. Journal of Medical Imaging (Bellingham, Wash.). 5: 045001. PMID 30525061 DOI: 10.1117/1.JMI.5.4.045001  0.56
2017 Kim JS, Chirikjian GS. Symmetrical Parameterization of Rigid Body Transformations for Biomolecular Structures. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 29172668 DOI: 10.1089/cmb.2017.0166  1
2016 Kim JS, Afsari B, Chirikjian GS. Cross-Validation of Data Compatibility Between Small Angle X-ray Scattering and Cryo-Electron Microscopy. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 27710115 DOI: 10.1089/cmb.2016.0139  1
2015 Dong H, Kim JS, Chirikjian GS. Computational Analysis of SAXS Data Acquisition. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 22: 787-805. PMID 26244255 DOI: 10.1089/cmb.2015.0115  1
2013 Chirikjian GS. Framed curves and knotted DNA. Biochemical Society Transactions. 41: 635-8. PMID 23514168 DOI: 10.1042/BST20120346  0.48
2012 Wolfe KC, Hastings WA, Dutta S, Long A, Shapiro BA, Woolf TB, Guthold M, Chirikjian GS. Multiscale modeling of double-helical DNA and RNA: a unification through Lie groups. The Journal of Physical Chemistry. B. 116: 8556-72. PMID 22676719 DOI: 10.1021/jp2126015  1
2012 Chirikjian GS, Yan Y. Mathematical aspects of molecular replacement. II. Geometry of motion spaces. Acta Crystallographica. Section a, Foundations of Crystallography. 68: 208-21. PMID 22338656 DOI: 10.1107/S010876731105118X  0.96
2011 Chirikjian GS. Mathematical aspects of molecular replacement. I. Algebraic properties of motion spaces. Acta Crystallographica. Section a, Foundations of Crystallography. 67: 435-46. PMID 21844648 DOI: 10.1107/S0108767311021003  0.64
2011 Park W, Midgett CR, Madden DR, Chirikjian GS. A Stochastic Kinematic Model of Class Averaging in Single-Particle Electron Microscopy. The International Journal of Robotics Research. 30: 730-754. PMID 21660125 DOI: 10.1177/0278364911400220  1
2011 Chirikjian GS. Modeling loop entropy. Methods in Enzymology. 487: 99-132. PMID 21187223 DOI: 10.1016/B978-0-12-381270-4.00004-4  0.48
2010 Rucker DC, Webster RJ, Chirikjian GS, Cowan NJ. Equilibrium Conformations of Concentric-tube Continuum Robots. The International Journal of Robotics Research. 29: 1263-1280. PMID 25125773 DOI: 10.1177/0278364910367543  1
2010 Park W, Reed KB, Okamura AM, Chirikjian GS. Estimation of Model Parameters for Steerable Needles. Ieee International Conference On Robotics and Automation : Icra : [Proceedings] Ieee International Conference On Robotics and Automation. 3703-3708. PMID 21643451 DOI: 10.1109/ROBOT.2010.5509380  1
2010 Park W, Wang Y, Chirikjian GS. The Path-of-Probability Algorithm for Steering and Feedback Control of Flexible Needles. The International Journal of Robotics Research. 29: 813-830. PMID 21151708 DOI: 10.1177/0278364909357228  1
2010 Chirikjian GS. INFORMATION-THEORETIC INEQUALITIES ON UNIMODULAR LIE GROUPS. Journal of Geometric Mechanics. 2: 119-158. PMID 21113416 DOI: 10.3934/jgm.2010.2.119  0.64
2010 Skliros A, Park W, Chirikjian GS. Position and Orientation Distributions for Non-Reversal Random Walks using Space-Group Fourier Transforms. Journal of Algebraic Statistics. 1: 27-46. PMID 21037950  0.56
2010 Chirikjian GS. Group theory and biomolecular conformation: I. Mathematical and computational models. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 22: 323103. PMID 20827378 DOI: 10.1088/0953-8984/22/32/323103  0.44
2010 Park W, Madden DR, Rockmore DN, Chirikjian GS. Deblurring of Class-Averaged Images in Single-Particle Electron Microscopy. Inverse Problems. 26: 3500521-35005229. PMID 20221416 DOI: 10.1088/0266-5611/26/3/035002  1
2009 Park W, Leibon G, Rockmore DN, Chirikjian GS. Accurate image rotation using hermite expansions. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 18: 1988-2003. PMID 19502127 DOI: 10.1109/TIP.2009.2024582  1
2009 Schuyler AD, Jernigan RL, Qasba PK, Ramakrishnan B, Chirikjian GS. Iterative cluster-NMA: A tool for generating conformational transitions in proteins. Proteins. 74: 760-76. PMID 18712827 DOI: 10.1002/prot.22200  1
2008 Park W, Chirikjian GS. Tomographic Reconstruction of Band-limited Hermite Expansions. Proceedings of Spie--the International Society For Optical Engineering. 6913. PMID 24357899 DOI: 10.1117/12.769604  0.56
2008 Park W, Liu Y, Zhou Y, Moses M, Chirikjian GS. Kinematic state estimation and motion planning for stochastic nonholonomic systems using the exponential map. Robotica. 26: 419-434. PMID 20454468 DOI: 10.1017/S0263574708004475  1
2008 Wang Y, Chirikjian GS. Nonparametric Second-Order Theory of Error Propagation on Motion Groups. The International Journal of Robotics Research. 27: 1258-1273. PMID 20333324 DOI: 10.1177/0278364908097583  1
2008 Chirikjian GS. The Stochastic Elastica and Excluded-Volume Perturbations of DNA Conformational Ensembles. International Journal of Non-Linear Mechanics. 43: 1108-1120. PMID 20228889 DOI: 10.1016/j.ijnonlinmec.2008.10.005  0.6
2008 Leibon G, Rockmore DN, Park W, Taintor R, Chirikjian GS. A Fast Hermite Transform. Theoretical Computer Science. 409: 211-228. PMID 20027202 DOI: 10.1016/j.tcs.2008.09.010  1
2008 Skliros A, Chirikjian GS. Position and Orientation Distributions for Locally Self-Avoiding Walks in the Presence of Obstacles. Polymer. 49: 1701-1715. PMID 18496591 DOI: 10.1016/j.polymer.2008.01.056  1
2007 Lee K, Wang Y, Chirikjian GS. A Lie-Theoretic Perspective on O(n) Mass Matrix Inversion for Serial Manipulators and Polypeptide Chains. Robotica. 25: 739. PMID 20165563 DOI: 10.1017/S0263574707003852  1
2007 Skliros A, Chirikjian GS. Torsional random walk statistics on lattices using convolution on crystallographic motion groups. Polymer. 48: 2155-2173. PMID 17898862 DOI: 10.1016/j.polymer.2007.01.066  1
2007 Park W, Chirikjian GS. Interconversion between truncated Cartesian and polar expansions of images. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 16: 1946-55. PMID 17688200  0.56
2006 Zhou Y, Chirikjian GS. Conformational Statistics of Semi-Flexible Macromolecular Chains with Internal Joints. Macromolecules. 39: 1950-1960. PMID 21243113 DOI: 10.1021/ma0512556  0.96
2006 Kim JS, Chirikjian GS. Conformational Analysis of Stiff Chiral Polymers with End-Constraints. Molecular Simulation. 32: 1139-1154. PMID 20198114 DOI: 10.1080/08927020601024137  1
2006 Jeong JI, Lattman EE, Chirikjian GS. A method for finding candidate conformations for molecular replacement using relative rotation between domains of a known structure. Acta Crystallographica. Section D, Biological Crystallography. 62: 398-409. PMID 16552141 DOI: 10.1107/S0907444906002204  1
2005 Jain AK, Zhou Y, Mustufa T, Clif Burdette E, Chirikjian GS, Fichtinger G. Matching and reconstruction of brachytherapy seeds using the Hungarian algorithm (MARSHAL). Medical Physics. 32: 3475-3492. PMID 28523842 DOI: 10.1118/1.2104087  0.96
2005 Jain AK, Mustafa T, Zhou Y, Burdette C, Chirikjian GS, Fichtinger G. FTRAC-A robust fluoroscope tracking fiducial. Medical Physics. 32: 3185-3198. PMID 28523832 DOI: 10.1118/1.2047782  0.96
2005 Kim JS, Chirikjian GS. A Unified Approach to Conformational Statistics of Classical Polymer and Polypeptide Models. Polymer. 46: 11904. PMID 20165562 DOI: 10.1016/j.polymer.2005.09.012  1
2005 Jain AK, Zhou Y, Mustufa T, Burdette EC, Chirikjian GS, Fichtinger G. Matching and reconstruction of brachytherapy seeds using the Hungarian algorithm (MARSHAL). Medical Physics. 32: 3475-92. PMID 16372418 DOI: 10.1117/12.595825  1
2005 Jain AK, Mustafa T, Zhou Y, Burdette C, Chirikjian GS, Fichtinger G. FTRAC--a robust fluoroscope tracking fiducial. Medical Physics. 32: 3185-98. PMID 16279072 DOI: 10.1118/1.2047782  1
2005 Schuyler AD, Chirikjian GS. Efficient determination of low-frequency normal modes of large protein structures by cluster-NMA. Journal of Molecular Graphics & Modelling. 24: 46-58. PMID 15990344 DOI: 10.1016/j.jmgm.2005.05.002  1
2005 Schuyler AD, Chirikjian GS, Lu JQ, Johnson HT. Random-walk statistics in moment-based O(N) tight binding and applications in carbon nanotubes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 046701. PMID 15903812 DOI: 10.1103/PhysRevE.71.046701  1
2005 Kim MK, Jernigan RL, Chirikjian GS. Rigid-cluster models of conformational transitions in macromolecular machines and assemblies. Biophysical Journal. 89: 43-55. PMID 15833998 DOI: 10.1529/biophysj.104.044347  0.72
2004 Patriciu A, Chirikjian GS, Pappu RV. Analysis of the conformational dependence of mass-metric tensor determinants in serial polymers with constraints. The Journal of Chemical Physics. 121: 12708-20. PMID 15606297 DOI: 10.1063/1.1821492  1
2004 Lee S, Chirikjian GS. Interhelical angle and distance preferences in globular proteins. Biophysical Journal. 86: 1105-17. PMID 14747345 DOI: 10.1016/S0006-3495(04)74185-5  0.84
2004 Schuyler AD, Chirikjian GS. Normal mode analysis of proteins: a comparison of rigid cluster modes with C(alpha) coarse graining. Journal of Molecular Graphics & Modelling. 22: 183-93. PMID 14629977 DOI: 10.1016/S1093-3263(03)00158-X  1
2003 Kim MK, Li W, Shapiro BA, Chirikjian GS. A comparison between elastic network interpolation and MD simulation of 16S ribosomal RNA. Journal of Biomolecular Structure & Dynamics. 21: 395-405. PMID 14616035 DOI: 10.1080/07391102.2003.10506935  0.72
2003 Kim MK, Jernigan RL, Chirikjian GS. An elastic network model of HK97 capsid maturation. Journal of Structural Biology. 143: 107-17. PMID 12972347  0.72
2002 Kim MK, Chirikjian GS, Jernigan RL. Elastic models of conformational transitions in macromolecules. Journal of Molecular Graphics & Modelling. 21: 151-60. PMID 12398345  0.72
2002 Kim MK, Jernigan RL, Chirikjian GS. Efficient generation of feasible pathways for protein conformational transitions. Biophysical Journal. 83: 1620-30. PMID 12202386 DOI: 10.1016/S0006-3495(02)73931-3  0.72
2002 Lee S, Fichtinger G, Chirikjian GS. Numerical algorithms for spatial registration of line fiducials from cross-sectional images. Medical Physics. 29: 1881-91. PMID 12201435 DOI: 10.1118/1.1493777  1
2000 Chirikjian GS, Wang Y. Conformational statistics of stiff macromolecules as solutions to partial differential equations on the rotation and motion groups Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 62: 880-92. PMID 11088545  1
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