| Year |
Citation |
Score |
| 2015 |
Vaez A, Jansen R, Prins BP, Hottenga JJ, de Geus EJ, Boomsma DI, Penninx BW, Nolte IM, Snieder H, Alizadeh BZ. In Silico Post Genome-Wide Association Studies Analysis of C-Reactive Protein Loci Suggests an Important Role for Interferons. Circulation. Cardiovascular Genetics. 8: 487-97. PMID 25752597 DOI: 10.1161/Circgenetics.114.000714 |
0.309 |
|
| 2013 |
Zhang J, Ruhlman TA, Mower JP, Jansen RK. Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing. Bmc Plant Biology. 13: 228. PMID 24373163 DOI: 10.1186/1471-2229-13-228 |
0.351 |
|
| 2007 |
Yu H, Jansen R, Stolovitzky G, Gerstein M. Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications. Bioinformatics (Oxford, England). 23: 2163-73. PMID 17540677 DOI: 10.1093/Bioinformatics/Btm291 |
0.712 |
|
| 2004 |
Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M. Bridging structural biology and genomics: assessing protein interaction data with known complexes. Drug Discovery Today. 9: S32-40. PMID 23573642 |
0.716 |
|
| 2004 |
Lin N, Wu B, Jansen R, Gerstein M, Zhao H. Information assessment on predicting protein-protein interactions. Bmc Bioinformatics. 5: 154. PMID 15491499 DOI: 10.1186/1471-2105-5-154 |
0.662 |
|
| 2004 |
Jansen R, Gerstein M. Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction. Current Opinion in Microbiology. 7: 535-45. PMID 15451510 DOI: 10.1016/J.Mib.2004.08.012 |
0.646 |
|
| 2004 |
Xia Y, Yu H, Jansen R, Seringhaus M, Baxter S, Greenbaum D, Zhao H, Gerstein M. Analyzing cellular biochemistry in terms of molecular networks. Annual Review of Biochemistry. 73: 1051-87. PMID 15189167 DOI: 10.1146/Annurev.Biochem.73.011303.073950 |
0.726 |
|
| 2003 |
Krebs WG, Tsai J, Alexandrov V, Junker J, Jansen R, Gerstein M. Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences. Methods in Enzymology. 374: 544-84. PMID 14696388 DOI: 10.1016/S0076-6879(03)74023-3 |
0.727 |
|
| 2003 |
Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science (New York, N.Y.). 302: 449-53. PMID 14564010 DOI: 10.1126/Science.1087361 |
0.768 |
|
| 2003 |
Jansen R, Bussemaker HJ, Gerstein M. Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models. Nucleic Acids Research. 31: 2242-51. PMID 12682375 DOI: 10.1093/Nar/Gkg306 |
0.553 |
|
| 2003 |
Zhu H, Bilgin M, Ptacek J, Hall D, Casamayor A, Bertone P, Lopez N, Lan N, Jansen R, Bidlingmaier S, Devgan G, Miller P, Gerstein M, Snyder M. Workshop I – Global Analysis of Protein Activities Using Protein Chips Biophysical Journal. 84: 3488. DOI: 10.1016/S0006-3495(03)70069-1 |
0.73 |
|
| 2002 |
Jansen R, Lan N, Qian J, Gerstein M. Integration of genomic datasets to predict protein complexes in yeast. Journal of Structural and Functional Genomics. 2: 71-81. PMID 12836664 DOI: 10.1023/A:1020495201615 |
0.625 |
|
| 2002 |
Mateos A, Dopazo J, Jansen R, Tu Y, Gerstein M, Stolovitzky G. Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons. Genome Research. 12: 1703-15. PMID 12421757 DOI: 10.1101/Gr.192502 |
0.507 |
|
| 2002 |
Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M. Bridging structural biology and genomics: assessing protein interaction data with known complexes. Trends in Genetics : Tig. 18: 529-36. PMID 12350343 DOI: 10.1016/S0168-9525(02)02763-4 |
0.733 |
|
| 2002 |
Greenbaum D, Jansen R, Gerstein M. Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts. Bioinformatics (Oxford, England). 18: 585-96. PMID 12016056 DOI: 10.1093/Bioinformatics/18.4.585 |
0.738 |
|
| 2002 |
Kumar A, Agarwal S, Heyman JA, Matson S, Heidtman M, Piccirillo S, Umansky L, Drawid A, Jansen R, Liu Y, Cheung KH, Miller P, Gerstein M, Roeder GS, Snyder M. Subcellular localization of the yeast proteome. Genes & Development. 16: 707-19. PMID 11914276 DOI: 10.1101/Gad.970902 |
0.621 |
|
| 2002 |
Gerstein M, Lan N, Jansen R. Proteomics. Integrating interactomes. Science (New York, N.Y.). 295: 284-7. PMID 11786630 DOI: 10.1126/Science.1068664 |
0.472 |
|
| 2002 |
Jansen R, Greenbaum D, Gerstein M. Relating whole-genome expression data with protein-protein interactions. Genome Research. 12: 37-46. PMID 11779829 DOI: 10.1101/Gr.205602 |
0.7 |
|
| 2002 |
Lan N, Jansen R, Gerstein M. Toward a systematic definition of protein function that scales to the genome level: Defining function in terms of interactions Proceedings of the Ieee. 90: 1848-1858. DOI: 10.1109/JPROC.2002.805302 |
0.542 |
|
| 2001 |
Greenbaum D, Luscombe NM, Jansen R, Qian J, Gerstein M. Interrelating different types of genomic data, from proteome to secretome: 'oming in on function. Genome Research. 11: 1463-8. PMID 11544189 DOI: 10.1101/Gr.207401 |
0.708 |
|
| 2001 |
Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M. Global analysis of protein activities using proteome chips. Science (New York, N.Y.). 293: 2101-5. PMID 11474067 DOI: 10.1126/science.1062191 |
0.711 |
|
| 2001 |
Qian J, Stenger B, Wilson CA, Lin J, Jansen R, Teichmann SA, Park J, Krebs WG, Yu H, Alexandrov V, Echols N, Gerstein M. PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information. Nucleic Acids Research. 29: 1750-64. PMID 11292848 DOI: 10.1093/Nar/29.8.1750 |
0.723 |
|
| 2000 |
Drawid A, Jansen R, Gerstein M. Genome-wide analysis relating expression level with protein subcellular localization Trends in Genetics. 16: 426-430. PMID 11050323 DOI: 10.1016/S0168-9525(00)02108-9 |
0.64 |
|
| 2000 |
Gerstein M, Jansen R. The current excitement in bioinformatics - Analysis of whole-genome expression data: How does it relate to protein structure and function? Current Opinion in Structural Biology. 10: 574-584. PMID 11042457 DOI: 10.1016/S0959-440X(00)00134-2 |
0.606 |
|
| 2000 |
Jansen R, Gerstein M. Analysis of the yeast transcriptome with structural and functional categories: Characterizing highly expressed proteins Nucleic Acids Research. 28: 1481-1488. PMID 10684945 DOI: 10.1093/Nar/28.6.1481 |
0.681 |
|
| 1999 |
Ross-Macdonald P, Coelho PS, Roemer T, Agarwal S, Kumar A, Jansen R, Cheung KH, Sheehan A, Symoniatis D, Umansky L, Heidtman M, Nelson FK, Iwasaki H, Hager K, Gerstein M, et al. Large-scale analysis of the yeast genome by transposon tagging and gene disruption. Nature. 402: 413-8. PMID 10586881 DOI: 10.1038/46558 |
0.589 |
|
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