Jose M. Borreguero, Ph.D. - Publications

Boston University, Boston, MA, United States 
Statistical physics

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Shrestha UR, Juneja P, Zhang Q, Gurumoorthy V, Borreguero JM, Urban V, Cheng X, Pingali SV, Smith JC, O'Neill HM, Petridis L. Generation of the configurational ensemble of an intrinsically disordered protein from unbiased molecular dynamics simulation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31548393 DOI: 10.1073/Pnas.1907251116  0.419
2018 Duff MR, Borreguero JM, Cuneo M, Ramanathan A, He J, Kamath G, Chennubhotla CS, Meilleur F, Howell EE, Herwig KW, Myles DAA, Agarwal PK. Modulating enzyme activity by altering protein dynamics with solvent. Biochemistry. PMID 29901984 DOI: 10.1021/Acs.Biochem.8B00424  0.354
2016 Stack AG, Borreguero JM, Prisk TR, Mamontov E, Wang HW, Vlcek L, Wesolowski DJ. Precise determination of water exchanges on a mineral surface. Physical Chemistry Chemical Physics : Pccp. PMID 27722503 DOI: 10.1039/C6Cp05836A  0.314
2016 Mamontov E, Sharma VK, Borreguero JM, Tyagi M. Protein-Style Dynamical Transition in a non-Biological Polymer and a non-Aqueous Solvent. The Journal of Physical Chemistry. B. PMID 26977709 DOI: 10.1021/Acs.Jpcb.6B00866  0.429
2015 Goswami M, Borreguero JM, Sumpter BG. Self-assembly and structural relaxation in a model ionomer melt. The Journal of Chemical Physics. 142: 084903. PMID 25725753 DOI: 10.1063/1.4913517  0.307
2011 Borreguero JM, He J, Meilleur F, Weiss KL, Brown CM, Myles DA, Herwig KW, Agarwal PK. Redox-promoting protein motions in rubredoxin. The Journal of Physical Chemistry. B. 115: 8925-36. PMID 21608980 DOI: 10.1021/Jp201346X  0.39
2011 Ramanathan A, Borreguero JM, Chennubhotla CS, Agarwal PK. Protein Flexibility and Energy Flow During Enzyme Catalysis Biophysical Journal. 100: 194a. DOI: 10.1016/J.Bpj.2010.12.1277  0.431
2009 Ramanathan A, Borreguero J, Langmead CJ, Agarwal PK. Conserved Protein Flexibility And Pathways Of Energy Flow In Enzyme Catalysis Biophysical Journal. 96: 71a. DOI: 10.1016/J.Bpj.2008.12.265  0.409
2007 Lam AR, Borreguero JM, Ding F, Dokholyan NV, Buldyrev SV, Stanley HE, Shakhnovich E. Parallel folding pathways in the SH3 domain protein. Journal of Molecular Biology. 373: 1348-60. PMID 17900612 DOI: 10.1016/J.Jmb.2007.08.032  0.685
2007 Zhou H, Pandit SB, Lee SY, Borreguero J, Chen H, Wroblewska L, Skolnick J. Analysis of TASSER-based CASP7 protein structure prediction results. Proteins. 69: 90-7. PMID 17705276 DOI: 10.1002/Prot.21649  0.349
2007 Borreguero JM, Skolnick J. Benchmarking of TASSER in the ab initio limit. Proteins. 68: 48-56. PMID 17444524 DOI: 10.1002/Prot.21392  0.466
2006 Urbanc B, Borreguero JM, Cruz L, Stanley HE. Ab initio discrete molecular dynamics approach to protein folding and aggregation. Methods in Enzymology. 412: 314-38. PMID 17046666 DOI: 10.1016/S0076-6879(06)12019-4  0.609
2006 Teplow DB, Lazo ND, Bitan G, Bernstein S, Wyttenbach T, Bowers MT, Baumketner A, Shea JE, Urbanc B, Cruz L, Borreguero J, Stanley HE. Elucidating amyloid beta-protein folding and assembly: A multidisciplinary approach. Accounts of Chemical Research. 39: 635-45. PMID 16981680 DOI: 10.1021/Ar050063S  0.525
2005 Cruz L, Urbanc B, Borreguero JM, Lazo ND, Teplow DB, Stanley HE. Solvent and mutation effects on the nucleation of amyloid beta-protein folding. Proceedings of the National Academy of Sciences of the United States of America. 102: 18258-63. PMID 16339896 DOI: 10.1073/Pnas.0509276102  0.531
2005 Borreguero JM, Urbanc B, Lazo ND, Buldyrev SV, Teplow DB, Stanley HE. Folding events in the 21-30 region of amyloid beta-protein (Abeta) studied in silico. Proceedings of the National Academy of Sciences of the United States of America. 102: 6015-20. PMID 15837927 DOI: 10.1073/Pnas.0502006102  0.552
2004 Borreguero JM, Ding F, Buldyrev SV, Stanley HE, Dokholyan NV. Multiple folding pathways of the SH3 domain. Biophysical Journal. 87: 521-33. PMID 15240485 DOI: 10.1529/Biophysj.104.039529  0.662
2003 Dokholyan NV, Borreguero JM, Buldyrev SV, Ding F, Stanley HE, Shakhnovich EI. Identifying importance of amino acids for protein folding from crystal structures. Methods in Enzymology. 374: 616-38. PMID 14696390 DOI: 10.1016/S0076-6879(03)74025-7  0.672
2003 Marqués MI, Borreguero JM, Stanley HE, Dokholyan NV. Possible mechanism for cold denaturation of proteins at high pressure. Physical Review Letters. 91: 138103. PMID 14525339 DOI: 10.1103/Physrevlett.91.138103  0.596
2003 Ding F, Borreguero JM, Buldyrey SV, Stanley HE, Dokholyan NV. Mechanism for the alpha-helix to beta-hairpin transition. Proteins. 53: 220-8. PMID 14517973 DOI: 10.1002/Prot.10468  0.624
2002 Borreguero JM, Dokholyan NV, Buldyrev SV, Shakhnovich EI, Stanley HE. Thermodynamics and folding kinetics analysis of the SH3 domain form discrete molecular dynamics. Journal of Molecular Biology. 318: 863-76. PMID 12054829 DOI: 10.1016/S0022-2836(02)00136-5  0.674
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