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Michael Lawrence, Ph.D. - Publications

Affiliations: 
2008 Statistics Iowa State University, Ames, IA, United States 
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Lee S, Lawrence M, Love MI. Fluent genomics with  and  . F1000research. 9: 109. PMID 32528659 DOI: 10.12688/F1000Research.22259.1  0.372
2019 Lee S, Cook D, Lawrence M. plyranges: a grammar of genomic data transformation. Genome Biology. 20: 4. PMID 30609939 DOI: 10.1186/S13059-018-1597-8  0.391
2019 Becker G, Moore SE, Lawrence M. trackr: A Framework for Enhancing Discoverability and Reproducibility of Data Visualizations and Other Artifacts in R Journal of Computational and Graphical Statistics. 28: 644-658. DOI: 10.1080/10618600.2019.1585259  0.377
2017 Zhu LJ, Lawrence M, Gupta A, Pagès H, Kucukural A, Garber M, Wolfe SA. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases. Bmc Genomics. 18: 379. PMID 28506212 DOI: 10.1186/S12864-017-3746-Y  0.333
2017 Becker G, Barr C, Gentleman R, Lawrence M. Enhancing reproducibility and collaboration via management of R package cohorts Journal of Statistical Software. 82: 1-18. DOI: 10.18637/Jss.V082.I01  0.376
2016 Goldstein LD, Cao Y, Pau G, Lawrence M, Wu TD, Seshagiri S, Gentleman R. Prediction and Quantification of Splice Events from RNA-Seq Data. Plos One. 11: e0156132. PMID 27218464 DOI: 10.1371/Journal.Pone.0156132  0.324
2016 Wu TD, Reeder J, Lawrence M, Becker G, Brauer MJ. GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality. Methods in Molecular Biology (Clifton, N.J.). 1418: 283-334. PMID 27008021 DOI: 10.1007/978-1-4939-3578-9_15  0.337
2016 Giannakis M, Mu JX, Shukla S, Qian ZR, Cohen O, Nishihara R, Cao Y, Yamauchi M, Sukawa Y, Nosho K, Ng K, Meyerhardt JA, Lawrence M, Gabriel SB, Lander E, et al. Novel driver genes and genomic predictors of immune infiltrates in colorectal cancer. Journal of Clinical Oncology. 34: 557-557. DOI: 10.1200/Jco.2016.34.4_Suppl.557  0.328
2015 Landau DA, Tausch E, Taylor-Weiner AN, Stewart C, Reiter JG, Bahlo J, Kluth S, Bozic I, Lawrence M, Böttcher S, Carter SL, Cibulskis K, Mertens D, Sougnez CL, Rosenberg M, et al. Mutations driving CLL and their evolution in progression and relapse. Nature. 526: 525-30. PMID 26466571 DOI: 10.1038/Nature15395  0.357
2015 Gehring JS, Fischer B, Lawrence M, Huber W. SomaticSignatures: inferring mutational signatures from single-nucleotide variants. Bioinformatics (Oxford, England). PMID 26163694 DOI: 10.1093/Bioinformatics/Btv408  0.411
2015 Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, et al. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 12: 115-21. PMID 25633503 DOI: 10.1038/Nmeth.3252  0.396
2015 Chapuy B, Dunford AJ, Stewart C, Kamburov A, Kim J, Roemer MG, Ziepert M, Li AJ, Lawrence M, Hess J, Rosenburg M, Taylor-Weiner AN, Redd RA, Horn H, Novak A, et al. Comprehensive Analyses of Genetic Features Identify Coordinate Signatures in Diffuse Large B-Cell Lymphoma Blood. 126: 3922-3922. DOI: 10.1182/Blood.V126.23.3922.3922  0.332
2014 Van Allen EM, Wagle N, Stojanov P, Perrin DL, Cibulskis K, Marlow S, Jane-Valbuena J, Friedrich DC, Kryukov G, Carter SL, McKenna A, Sivachenko A, Rosenberg M, Kiezun A, Voet D, Lawrence M, et al. Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine. Nature Medicine. 20: 682-8. PMID 24836576 DOI: 10.1038/Nm.3559  0.317
2014 Liu J, McCleland M, Stawiski EW, Gnad F, Mayba O, Haverty PM, Durinck S, Chen YJ, Klijn C, Jhunjhunwala S, Lawrence M, Liu H, Wan Y, Chopra V, Yaylaoglu MB, et al. Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer. Nature Communications. 5: 3830. PMID 24807215 DOI: 10.1038/Ncomms4830  0.312
2014 Wang L, Shalek AK, Lawrence M, Ding R, Gaublomme JT, Pochet N, Stojanov P, Sougnez C, Shukla SA, Stevenson KE, Zhang W, Wong J, Sievers QL, MacDonald BT, Vartanov AR, et al. Somatic mutation as a mechanism of Wnt/β-catenin pathway activation in CLL. Blood. 124: 1089-98. PMID 24778153 DOI: 10.1182/Blood-2014-01-552067  0.321
2014 Obenchain V, Lawrence M, Carey V, Gogarten S, Shannon P, Morgan M. VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants. Bioinformatics (Oxford, England). 30: 2076-8. PMID 24681907 DOI: 10.1093/Bioinformatics/Btu168  0.305
2014 Landau DA, Stewart C, Reiter JG, Lawrence M, Sougnez C, Brown JR, Lopez-Guillermo A, Gabriel S, Lander E, Neuberg DS, López-Otín C, Campo E, Getz G, Wu CJ. Novel Putative Driver Gene Mutations in Chronic Lymphocytic Leukemia (CLL): Results from a Combined Analysis of Whole-Exome Sequencing of 262 Primary CLL Samples Blood. 124: 1952-1952. DOI: 10.1182/Blood.V124.21.1952.1952  0.35
2014 Kiezun A, Perry J, Tonzi P, Allen EV, Carter SL, Baca S, Bhatt A, Lawrence M, Walensky L, Wagle N, Mora J, deTorres C, Lavarino C, Velasco-Hidalgo L, Cardenas-Cardos R, et al. Abstract A41: Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma Cancer Research. 74. DOI: 10.1158/1538-7445.Pedcan-A41  0.337
2014 Crompton B, Stewart C, Taylor-Weiner A, Alexa G, Kurek K, Calicchio M, Kiezun A, Carter S, Shukla S, Mehta S, Thorner A, Torres Cd, Lavarino C, Sunol M, McKenna A, ... ... Lawrence M, et al. Abstract 999: The genomic landscape of pediatric Ewing sarcoma Cancer Research. 74: 999-999. DOI: 10.1158/1538-7445.Am2014-999  0.334
2013 Huntley MA, Larson JL, Chaivorapol C, Becker G, Lawrence M, Hackney JA, Kaminker JS. ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses. Bioinformatics (Oxford, England). 29: 3220-1. PMID 24078713 DOI: 10.1093/Bioinformatics/Btt551  0.396
2013 Hummelen PV, Ducar M, Jones RT, Raza A, Sunkavalli A, Hanna M, Mills A, Adusumilli R, Kumar P, Schubert L, Breneiser M, Cooley AC, Garcia E, Scholl LM, Lindeman NI, ... ... Lawrence M, et al. Abstract 819: Targeted sequencing to detect somatic mutations, translocations and copy-number variation in human tumors simultaneously. Cancer Research. 73: 819-819. DOI: 10.1158/1538-7445.Am2013-819  0.335
2013 Chmielecki J, Rosenberg M, Imielinski M, Hernandez B, Lawrence M, Sivachenko A, Cibulskis K, Voet D, Sougnez C, Gabriel S, Getz G, Meyerson M. Abstract 1112: Whole exome and whole genome sequence analysis of lung adenocarcinoma. Cancer Research. 73: 1112-1112. DOI: 10.1158/1538-7445.Am2013-1112  0.351
2012 Yin T, Cook D, Lawrence M. ggbio: an R package for extending the grammar of graphics for genomic data. Genome Biology. 13: R77. PMID 22937822 DOI: 10.1186/Gb-2012-13-8-R77  0.542
2012 Landau D, Carter S, Stojanov P, Stevenson KE, Mckenna A, Lawrence M, Sougnez C, Sivachenko A, Wang L, Zhang W, Sachet S, Vartanov AR, Fernandes SM, Cibulskis K, Tesar B, et al. The Evolution and Impact of Subclonal Mutations in Chronic Lymphocytic Leukemia Blood. 120: 5-5. DOI: 10.1182/Blood.V120.21.5.5  0.324
2012 Helman E, Lawrence M, Stewart C, Getz G, Meyerson M. Abstract 5060: Identification of somatic retrotransposon insertions across cancer types using RetroSeq Cancer Research. 72: 5060-5060. DOI: 10.1158/1538-7445.Am2012-5060  0.362
2012 Imielinski M, Hernandez B, Lawrence M, Hodis E, Kryukov G, Stojanov P, Sivachenko A, Cibulskis K, Sougnez C, Auclair D, Ardlie K, Banerji S, Hammerman P, Thomas RK, Gabriel S, et al. Abstract 1682: Uncovering signals of somatic selection through whole exome and whole genome sequencing of lung adenocarcinoma Cancer Research. 72: 1682-1682. DOI: 10.1158/1538-7445.Am2012-1682  0.346
2012 Hernandez B, Hammerman P, Imielinski M, Lawrence M, Stojanov P, Getz G, Meyerson M. Abstract PR1: Integrating expression data improves mutational significance analysis of lung squamous carcinoma Clinical Cancer Research. 18. DOI: 10.1158/1078-0432.12Aacriaslc-Pr1  0.339
2011 Kryukov GV, Berger MF, Stransky N, Barretina J, Onofrio R, Caponigro G, Sougnez C, Monahan J, Shefler E, Venkhatesan K, Cibulskis K, Morais P, Sivachenko A, Meltzer J, Lawrence M, et al. Abstract 923: Separating the wheat from the chaff: A first look at the Cancer Cell Lines Encyclopedia sequencing data Cancer Research. 71: 923-923. DOI: 10.1158/1538-7445.Am2011-923  0.337
2011 Pugh TJ, Lawrence M, Sougnez C, Getz G, Attiyeh E, Hogarty M, Diskin S, Yael M, Diamond M, Asgharzadeh S, Sposto R, Wei JS, Badgett T, London WB, Gastier-Foster J, et al. Abstract 4756: Exome sequencing of 81 neuroblastomas identifies a wide diversity of somatic mutation Cancer Research. 71: 4756-4756. DOI: 10.1158/1538-7445.Am2011-4756  0.342
2011 Stransky N, Egloff AM, Tward A, Auclair D, Cibulskis K, Lawrence M, Sivachenko A, Berger M, Seethala R, Sougnez C, Cortes M, Winckler W, Gabriel S, Getz G, Golub T, et al. Abstract 3931: Whole genome and whole exome sequencing of head and neck cancer Cancer Research. 71: 3931-3931. DOI: 10.1158/1538-7445.Am2011-3931  0.358
2010 Lawrence M, Lang DT. RGtk2: A Graphical User Interface Toolkit for R Journal of Statistical Software. 37: 1-52. DOI: 10.18637/Jss.V037.I08  0.368
2010 Wang L, Pochet N, Cibulskis K, Zhang W, Lawrence M, Sievers QL, Shefler E, Neuberg D, Gabriel S, Sougnez C, Regev A, Getz G, Hacohen N, Brown JR, Wu CJ. Whole Genome Sequencing Identifies Functional Mutations In the Wnt Pathway In CLL Blood. 116: 693-693. DOI: 10.1182/Blood.V116.21.693.693  0.323
2009 Lawrence M, Gentleman R, Carey V. rtracklayer: An R package for interfacing with genome browsers Bioinformatics. 25: 1841-1842. PMID 19468054 DOI: 10.1093/Bioinformatics/Btp328  0.369
2009 Lawrence M, Wickham H, Cook D, Hofmann H, Swayne DF. Extending the GGobi pipeline from R: Rapid prototyping of interactive visualizations Computational Statistics. 24: 195-205. DOI: 10.1007/S00180-008-0115-Y  0.425
2008 Lawrence M. Software for the interactive visualisation of experimental data in the genomic context International Journal of Computational Biology and Drug Design. 1: 406-421. PMID 20063465 DOI: 10.1504/Ijcbdd.2008.022210  0.363
2008 Lawrence M, Cook D, Lee E, Babka H, Wurtele ES. explorase: Multivariate Exploratory Analysis and Visualization for Systems Biology Journal of Statistical Software. 25. DOI: 10.18637/Jss.V025.I09  0.536
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