Joshua J. Waterfall, Ph.D. - Publications

Affiliations: 
2006 Cornell University, Ithaca, NY, United States 

58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Bigot J, Lalanne AI, Lucibello F, Gueguen P, Houy A, Dayot S, Ganier O, Gilet J, Tosello J, Nemati F, Pierron G, Waterfall JJ, Barnhill R, Gardrat S, Piperno-Neumann S, et al. Splicing patterns in SF3B1 mutated uveal melanoma generate shared immunogenic tumor-specific neo-epitopes. Cancer Discovery. PMID 33811047 DOI: 10.1158/2159-8290.CD-20-0555  0.01
2021 Gueguen P, Metoikidou C, Dupic T, Lawand M, Goudot C, Baulande S, Lameiras S, Lantz O, Girard N, Seguin-Givelet A, Lefevre M, Mora T, Walczak AM, Waterfall JJ, Amigorena S. Contribution of resident and circulating precursors to tumor-infiltrating CD8 T cell populations in lung cancer. Science Immunology. 6. PMID 33514641 DOI: 10.1126/sciimmunol.abd5778  0.01
2020 Leruste A, Chauvin C, Pouponnot C, Bourdeaut F, Waterfall JJ, Piaggio E. Immune responses in genomically simple SWI/SNF-deficient cancers. Cancer. PMID 33079397 DOI: 10.1002/cncr.33172  0.01
2020 Alsafadi S, Dayot S, Tarin M, Houy A, Bellanger D, Cornella M, Wassef M, Waterfall JJ, Lehnert E, Roman-Roman S, Stern MH, Popova T. Genetic alterations of SUGP1 mimic mutant-SF3B1 splice pattern in lung adenocarcinoma and other cancers. Oncogene. PMID 33057152 DOI: 10.1038/s41388-020-01507-5  0.01
2020 Mitchell KA, Nichols N, Tang W, Walling J, Stevenson H, Pineda M, Stefanescu R, Edelman DC, Girvin AT, Zingone A, Sinha S, Bowman E, Rossi EL, Arauz RF, Zhu YJ, ... ... Waterfall JJ, et al. Author Correction: Recurrent PTPRT/JAK2 mutations in lung adenocarcinoma among African Americans. Nature Communications. 11: 700. PMID 32001692 DOI: 10.1038/S41467-020-14448-0  1
2020 Vibert J, Watson S, Benoist C, Waterfall J, Pierron G, Delattre O. Abstract PR16: Comprehensive transcriptomic characterization of 1,400 sarcomas for diagnosis and immune contexture Cancer Research. 80. DOI: 10.1158/1538-7445.Pedca19-Pr16  0.01
2020 Han Z, Andrianteranagna M, Jesus-Lobon-Iglesias M, Tauziède-Espariat A, Beccaria K, Fréneaux P, Waterfall JJ, Masliah-Planchon J, Bourneix C, Pierron G, Leruste A, Chauvin C, Surdez D, Varlet P, Dufour C, et al. Abstract B68: Spatial and temporal conditions for Smarcb1 deletion determines mouse AT/RT (atypical teratoid/rhabdoid tumor) subtype Cancer Research. 80. DOI: 10.1158/1538-7445.Pedca19-B68  0.01
2019 Mitchell KA, Nichols N, Tang W, Walling J, Stevenson H, Pineda M, Stefanescu R, Edelman DC, Girvin AT, Zingone A, Sinha S, Bowman E, Rossi EL, Arauz RF, Jack Zhu Y, ... ... Waterfall J, et al. Recurrent PTPRT/JAK2 mutations in lung adenocarcinoma among African Americans. Nature Communications. 10: 5735. PMID 31844068 DOI: 10.1038/S41467-019-13732-Y  1
2019 Brodie SA, Rodriguez-Aulet JP, Giri N, Dai J, Steinberg M, Waterfall JP, Roberson D, Ballew BJ, Zhou W, Anzick SL, Jiang Y, Wang Y, Zhu YJ, Meltzer PS, Boland J, et al. 1q21.1 deletion and a rare functional polymorphism in siblings with thrombocytopenia-absent radius-like phenotypes. Cold Spring Harbor Molecular Case Studies. 5. PMID 31836590 DOI: 10.1101/mcs.a004564  1
2019 Leruste A, Tosello J, Ramos RN, Tauziède-Espariat A, Brohard S, Han ZY, Beccaria K, Andrianteranagna M, Caudana P, Nikolic J, Chauvin C, Niborski LL, Manriquez V, Richer W, Masliah-Planchon J, ... ... Waterfall JJ, et al. Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors. Cancer Cell. PMID 31708437 DOI: 10.1016/j.ccell.2019.10.008  0.01
2019 Rodrigues M, Mobuchon L, Houy A, Alsafadi S, Baulande S, Mariani O, Marande B, Ait Rais K, Van der Kooij MK, Kapiteijn EHW, Gassama S, Gardrat S, Barnhill R, Servois V, Dendale R, ... ... Waterfall JJ, et al. Evolutionary routes in metastatic uveal melanomas depend on alterations. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 31227496 DOI: 10.1158/1078-0432.CCR-19-1215  0.01
2019 Yost KE, Clatterbuck Soper SF, Walker RL, Pineda MA, Zhu YJ, Ester CD, Showman S, Roschke AV, Waterfall JJ, Meltzer PS. Rapid and reversible suppression of ALT by DAXX in osteosarcoma cells. Scientific Reports. 9: 4544. PMID 30872698 DOI: 10.1038/S41598-019-41058-8  1
2019 White BS, Gentles AJ, Reyniès Ad, Newman AM, Lamb A, Heiser L, Waterfall JJ, Yu T, Guinney J. Abstract 1690: A tumor deconvolution DREAM Challenge: Inferring immune infiltration from bulk gene expression data Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-1690  0.01
2018 Lee JS, Das A, Jerby-Arnon L, Arafeh R, Auslander N, Davidson M, McGarry L, James D, Amzallag A, Park SG, Cheng K, Robinson W, Atias D, Stossel C, Buzhor E, ... ... Waterfall JJ, et al. Harnessing synthetic lethality to predict the response to cancer treatment. Nature Communications. 9: 2546. PMID 29959327 DOI: 10.1038/S41467-018-04647-1  1
2018 Masliah-Planchon J, Lévy D, Héron D, Giuliano F, Badens C, Fréneaux P, Galmiche L, Guinebretierre JM, Cellier C, Waterfall JJ, Aït-Raïs K, Pierron G, Glorion C, Desguerre I, Soler C, et al. Does ATRX germline variation predispose to osteosarcoma? Three additional cases of osteosarcoma in two ATR-X syndrome patients. European Journal of Human Genetics : Ejhg. PMID 29706636 DOI: 10.1038/S41431-018-0147-X  0.01
2018 Kouprina N, Liskovykh M, Lee NCO, Noskov VN, Waterfall JJ, Walker RL, Meltzer PS, Topol EJ, Larionov V. Analysis of the 9p21.3 sequence associated with coronary artery disease reveals a tendency for duplication in a CAD patient. Oncotarget. 9: 15275-15291. PMID 29632643 DOI: 10.18632/Oncotarget.24567  1
2018 Waterfall JJ, Meltzer PS. A Non-canonical Polycomb Dependency in Synovial Sarcoma. Cancer Cell. 33: 344-346. PMID 29533779 DOI: 10.1016/J.Ccell.2018.02.013  1
2018 Pace L, Goudot C, Zueva E, Gueguen P, Burgdorf N, Waterfall JJ, Quivy JP, Almouzni G, Amigorena S. The epigenetic control of stemness in CD8+ T cell fate commitment. Science (New York, N.Y.). 359: 177-186. PMID 29326266 DOI: 10.1126/Science.Aah6499  0.01
2018 Leruste A, Han Z, Tauziède-Espariat A, Caudana P, Waterfall JJ, Andrianteranagna M, Sedlik C, Ramos R, Viel S, Chauvin C, Delattre O, Piaggio E, Bourdeaut F. Abstract PR03: Analysis of immune infiltrate identifies checkpoint blockade and TLR3 activation as efficient synergistic combination of immunotherapy in rhabdoid tumors Cancer Research. 78. DOI: 10.1158/1538-7445.Pedca17-Pr03  0.01
2018 Soper SFC, Yost KE, Walker RL, Pineda MA, Zhu YJ, Waterfall JJ, Meltzer PS. Abstract 1466: DAXX localizes ATRX to suppress alternative lengthening of telomeres in osteosarcoma Cancer Research. 78: 1466-1466. DOI: 10.1158/1538-7445.Am2018-1466  1
2018 Lee JS, Das A, Jerby-Arnon L, Arafeh R, Davidson M, Amzallag A, Park SG, Cheng K, Robinson W, Atias D, Stossel C, Buzhor E, Stein G, Waterfall JJ, Meltzer PS, et al. Abstract A188: Harnessing synthetic lethality to predict the response to cancer treatments Molecular Cancer Therapeutics. 17. DOI: 10.1158/1535-7163.Targ-17-A188  1
2018 Leruste A, Caudana P, Tauziede-Espariat A, Han Z, Ramos RN, Nikolic J, Tosello J, Brohard S, Andrianteranagna M, Chauvin C, Masliah-Planchon J, Sedlick C, Coulomb A, Galmiche-Rolland L, Ranchere D, ... ... Waterfall JJ, et al. Atrt-35. Smarcb1-Deficient Tumors Activate Both Innate And Adaptive Immune Responses And Are Susceptible To Checkpoint Blockade And Tlr3 Activation Neuro-Oncology. 20. DOI: 10.1093/Neuonc/Noy059.032  0.01
2017 Chaisaingmongkol J, Budhu A, Dang H, Rabibhadana S, Pupacdi B, Kwon SM, Forgues M, Pomyen Y, Bhudhisawasdi V, Lertprasertsuke N, Chotirosniramit A, Pairojkul C, Auewarakul CU, Sricharunrat T, Phornphutkul K, ... ... Waterfall JJ, et al. Common Molecular Subtypes Among Asian Hepatocellular Carcinoma and Cholangiocarcinoma. Cancer Cell. PMID 28648284 DOI: 10.1016/J.Ccell.2017.05.009  1
2017 Lee JS, Das A, Jerby-Arnon L, Park SG, Davidson M, Atias D, Amzallag A, Stossel C, Buzhor E, Robinson W, Cheng K, Waterfall JJ, Meltzer PS, Hannenhalli S, Benes CH, et al. Abstract 543: Harnessing synthetic lethality to predict clinical outcomes of cancer treatment Cancer Research. 77: 543-543. DOI: 10.1158/1538-7445.Am2017-543  1
2017 Edelman DC, Stevenson HS, Wang Y, Arons E, Waterfall JJ, Petersen D, Zhou H, Meltzer PS, Kreitman RJ. Abstract 4682: Genomic profiles in gene expression and methylation help define the molecular characteristics of hairy cell leukemia subtypes Cancer Research. 77: 4682-4682. DOI: 10.1158/1538-7445.Am2017-4682  1
2017 Budhu A, Chaisaingmongkol J, Dang H, Rabibhadana S, Pupacdi B, Kwon SM, Forgues M, Pomyen Y, Bhudhisawasdi V, Lertprasertsuke N, Chotirosniramit A, Pairojkul C, Auewarakul CU, Sricharunrat T, Phornphutkul K, ... ... Waterfall JJ, et al. Abstract 4390: The Thailand initiative in genomics and expression research in liver cancer: Race related common molecular subtypes among Asian hepatocellular carcinoma and cholangiocarcinoma identified by integrated genomics Cancer Research. 77: 4390-4390. DOI: 10.1158/1538-7445.Am2017-4390  1
2017 Soper SFC, Showman SA, Driest KE, Waterfall JJ, Walker RL, Pineda MA, Zhu YJ, Wang Y, Ester CD, Bilke S, Meltzer PS. Abstract 3467: A DAXX-KIFC3 fusion potentiates alternative lengthening of telomeres in osteosarcoma Cancer Research. 77: 3467-3467. DOI: 10.1158/1538-7445.Am2017-3467  1
2016 Killian JK, Dorssers LC, Trabert B, Gillis AJ, Cook MB, Wang Y, Waterfall JJ, Stevenson H, Smith WI, Noyes N, Retnakumar P, Stoop JH, Oosterhuis JW, Meltzer PS, McGlynn KA, et al. Imprints and DPPA3 are bypassed during pluripotency- and differentiation-coupled methylation reprogramming in testicular germ cell tumors. Genome Research. 26: 1490-1504. PMID 27803193 DOI: 10.1101/Gr.201293.115  1
2016 Li J, Woods SL, Healey S, Beesley J, Chen X, Lee JS, Sivakumaran H, Wayte N, Nones K, Waterfall JJ, Pearson J, Patch AM, Senz J, Ferreira MA, Kaurah P, et al. Point Mutations in Exon 1B of APC Reveal Gastric Adenocarcinoma and Proximal Polyposis of the Stomach as a Familial Adenomatous Polyposis Variant. American Journal of Human Genetics. PMID 27087319 DOI: 10.1016/J.Ajhg.2016.03.001  1
2016 Sorber R, Teper Y, Abisoye-Ogunniyan A, Waterfall JJ, Davis S, Killian JK, Pineda M, Ray S, McCord MR, Pflicke H, Burkett SS, Meltzer PS, Rudloff U. Whole Genome Sequencing of Newly Established Pancreatic Cancer Lines Identifies Novel Somatic Mutation (c.2587G>A) in Axon Guidance Receptor Plexin A1 as Enhancer of Proliferation and Invasion. Plos One. 11: e0149833. PMID 26962861 DOI: 10.1371/Journal.Pone.0149833  1
2016 Driest KE, Waterfall JJ, Walker RL, Pineda MA, Abaan O, Zhu YJ, Wang Y, Ester CD, Davis SR, Bilke S, Meltzer PS. Abstract 2717: Reintroduction of DAXX suppresses alternative lengthening of telomeres in osteosarcoma Cancer Research. 76: 2717-2717. DOI: 10.1158/1538-7445.Am2016-2717  1
2015 Grøntved L, Waterfall JJ, Kim DW, Baek S, Sung MH, Zhao L, Park JW, Nielsen R, Walker RL, Zhu YJ, Meltzer PS, Hager GL, Cheng SY. Transcriptional activation by the thyroid hormone receptor through ligand-dependent receptor recruitment and chromatin remodelling. Nature Communications. 6: 7048. PMID 25916672 DOI: 10.1038/Ncomms8048  1
2015 Waterfall JJ, Meltzer PS. Avalanching mutations in biallelic mismatch repair deficiency syndrome. Nature Genetics. 47: 194-6. PMID 25711864 DOI: 10.1038/Ng.3227  1
2015 Waterfall J, Killian JK, Zhu YJ, Lau CC, Miettinen M, Helman LJ, Meltzer PS. Abstract LB-171: Collaborating mutations in gastrointestinal stromal tumor Cancer Research. 75. DOI: 10.1158/1538-7445.Am2015-Lb-171  1
2015 Edelman DC, Arons E, Stevenson H, Gomez A, Petersen D, Zhou H, Wang Y, Waterfall JJ, Meltzer PS, Kreitman R. Abstract 5307: Analysis of telomere length in classic and variant hairy cell leukemia Cancer Research. 75: 5307-5307. DOI: 10.1158/1538-7445.Am2015-5307  1
2014 Killian JK, Miettinen M, Walker RL, Wang Y, Zhu YJ, Waterfall JJ, Noyes N, Retnakumar P, Yang Z, Smith WI, Killian MS, Lau CC, Pineda M, Walling J, Stevenson H, et al. Recurrent epimutation of SDHC in gastrointestinal stromal tumors. Science Translational Medicine. 6: 268ra177. PMID 25540324 DOI: 10.1126/Scitranslmed.3009961  1
2014 Waterfall JJ, Meltzer PS. Building through breaking: the development of cancer neochromosomes. Cancer Cell. 26: 593-5. PMID 25517741 DOI: 10.1016/J.Ccell.2014.10.013  1
2014 Waterfall JJ, Killian JK, Meltzer PS. The role of mutation of metabolism-related genes in genomic hypermethylation Biochemical and Biophysical Research Communications. 455: 16-23. PMID 25111818 DOI: 10.1016/J.Bbrc.2014.08.003  1
2014 Waterfall JJ, Arons E, Walker RL, Pineda M, Roth L, Killian JK, Abaan OD, Davis SR, Kreitman RJ, Meltzer PS. High prevalence of MAP2K1 mutations in variant and IGHV4-34-expressing hairy-cell leukemias. Nature Genetics. 46: 8-10. PMID 24241536 DOI: 10.1038/Ng.2828  1
2014 Abaan OD, Waterfall J, Davis S, Edelman D, Gomez A, Savage S, Pommier Y, Meltzer P. Abstract 4167: Harvesting knowledge from unexploited genomic data: Estimating relative telomere length from targeted-resequencing Cancer Research. 74: 4167-4167. DOI: 10.1158/1538-7445.Am2014-4167  1
2013 Killian JK, Kim SY, Miettinen M, Smith C, Merino M, Tsokos M, Quezado M, Smith WI, Jahromi MS, Xekouki P, Szarek E, Walker RL, Lasota J, Raffeld M, Klotzle B, ... ... Waterfall JJ, et al. Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor. Cancer Discovery. 3: 648-57. PMID 23550148 DOI: 10.1158/2159-8290.Cd-13-0092  1
2013 Meltzer PS, Killian JK, Kim SY, Miettinen M, Smith C, Tsokos M, Quezado M, Smith WI, Jahromi MS, Walker RL, Lasota J, Klotzle B, Wang Z, Jones L, Zhu Y, ... ... Waterfall JJ, et al. Abstract 2963: Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor. Cancer Research. 73: 2963-2963. DOI: 10.1158/1538-7445.Am2013-2963  1
2012 Core LJ, Waterfall JJ, Gilchrist DA, Fargo DC, Kwak H, Adelman K, Lis JT. Defining the status of RNA polymerase at promoters. Cell Reports. 2: 1025-35. PMID 23062713 DOI: 10.1016/J.Celrep.2012.08.034  1
2012 Chatterjee R, Zhao J, He X, Shlyakhtenko A, Mann I, Waterfall JJ, Meltzer P, Sathyanarayana BK, FitzGerald PC, Vinson C. Overlapping ETS and CRE Motifs ((G/C)CGGAAGTGACGTCA) preferentially bound by GABPα and CREB proteins. G3 (Bethesda, Md.). 2: 1243-56. PMID 23050235 DOI: 10.1534/G3.112.004002  1
2012 Waterfall JJ, Meltzer PS. Targeting epigenetic misregulation in synovial sarcoma. Cancer Cell. 21: 323-4. PMID 22439927 DOI: 10.1016/J.Ccr.2012.02.023  1
2011 Killian JK, Bilke S, Davis S, Walker RL, Jaeger E, Killian MS, Waterfall JJ, Bibikova M, Fan JB, Smith WI, Meltzer PS. A methyl-deviator epigenotype of estrogen receptor-positive breast carcinoma is associated with malignant biology American Journal of Pathology. 179: 55-65. PMID 21641572 DOI: 10.1016/J.Ajpath.2011.03.022  1
2011 Hah N, Danko CG, Core L, Waterfall JJ, Siepel A, Lis JT, Kraus WL. A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell. 145: 622-34. PMID 21549415 DOI: 10.1016/J.Cell.2011.03.042  1
2011 Min IM, Waterfall JJ, Core LJ, Munroe RJ, Schimenti J, Lis JT. Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes & Development. 25: 742-54. PMID 21460038 DOI: 10.1101/Gad.2005511  1
2011 Hah N, Danko CG, Core L, Waterfall JJ, Siepel A, Lis JT, Kraus WL. Erratum: A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells (Cell (2011) 145 (622-634)) Cell. 145. DOI: 10.1016/J.Cell.2011.06.003  1
2009 Lis JT, Buckley M, Core LJ, Min IM, Petesch S, Waterfall JJ, Zobeck K. New Views of Local and Genome-wide Transcription Regulation in Vivo Journal of Genetics and Molecular Biology. 20: 90-90. DOI: 10.30047/Jgmb.200912.0017  1
2008 Core LJ, Waterfall JJ, Lis JT. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science (New York, N.Y.). 322: 1845-8. PMID 19056941 DOI: 10.1126/Science.1162228  1
2008 Casey FP, Waterfall JJ, Gutenkunst RN, Myers CR, Sethna JP. Variational method for estimating the rate of convergence of Markov-chain Monte Carlo algorithms. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 046704. PMID 18999558 DOI: 10.1103/Physreve.78.046704  1
2007 Gutenkunst RN, Casey FP, Waterfall JJ, Myers CR, Sethna JP. Extracting falsifiable predictions from sloppy models. Annals of the New York Academy of Sciences. 1115: 203-11. PMID 17925353 DOI: 10.1196/Annals.1407.003  1
2007 Gutenkunst RN, Waterfall JJ, Casey FP, Brown KS, Myers CR, Sethna JP. Universally sloppy parameter sensitivities in systems biology models. Plos Computational Biology. 3: 1871-78. PMID 17922568 DOI: 10.1371/Journal.Pcbi.0030189  1
2007 Verborg W, Thomas H, Bissett D, Waterfall J, Steiner J, Cooper M, Rankin EM. First-into-man phase I and pharmacokinetic study of XR5944.14, a novel agent with a unique mechanism of action British Journal of Cancer. 97: 844-850. PMID 17848959 DOI: 10.1038/sj.bjc.6603953  1
2007 Casey FP, Baird D, Feng Q, Gutenkunst RN, Waterfall JJ, Myers CR, Brown KS, Cerione RA, Sethna JP. Optimal experimental design in an epidermal growth factor receptor signalling and down-regulation model. Iet Systems Biology. 1: 190-202. PMID 17591178 DOI: 10.1049/Iet-Syb:20060065  1
2006 Waterfall JJ, Casey FP, Gutenkunst RN, Brown KS, Myers CR, Brouwer PW, Elser V, Sethna JP. Sloppy-model universality class and the Vandermonde matrix. Physical Review Letters. 97: 150601. PMID 17155311 DOI: 10.1103/Physrevlett.97.150601  1
1948 Hunter AR, Waterfall J. MYANESIN IN HYPERKINETIC STATES The Lancet. 251: 366-367. PMID 18904277  1
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