Ryan N. Gutenkunst, Ph.D. - Publications

Affiliations: 
2008 Cornell University, Ithaca, NY, United States 

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Ragsdale AP, Coffman AJ, Hsieh P, Struck TJ, Gutenkunst RN. Triallelic Population Genomics for Inferring Correlated Fitness Effects of Same Site Nonsynonymous Mutations. Genetics. PMID 27029732 DOI: 10.1534/Genetics.115.184812  0.68
2016 Hsieh P, Veeramah KR, Lachance J, Tishkoff SA, Wall JD, Hammer MF, Gutenkunst RN. Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection. Genome Research. PMID 26888263 DOI: 10.1101/Gr.192971.115  0.68
2015 Coffman AJ, Hsieh P, Gravel S, Gutenkunst RN. Computationally efficient composite likelihood statistics for demographic inference. Molecular Biology and Evolution. PMID 26545922 DOI: 10.1093/Molbev/Msv255  0.68
2015 Hermansen RA, Mannakee BK, Knecht W, Liberles DA, Gutenkunst RN. Characterizing selective pressures on the pathway for de novo biosynthesis of pyrimidines in yeast. Bmc Evolutionary Biology. 15: 232. PMID 26511837 DOI: 10.1186/S12862-015-0515-X  0.68
2015 Pandya S, Struck TJ, Mannakee BK, Paniscus M, Gutenkunst RN. Testing whether metazoan tyrosine loss was driven by selection against promiscuous phosphorylation. Molecular Biology and Evolution. 32: 144-52. PMID 25312910 DOI: 10.1093/Molbev/Msu284  0.68
2014 Robinson JD, Coffman AJ, Hickerson MJ, Gutenkunst RN. Sampling strategies for frequency spectrum-based population genomic inference. Bmc Evolutionary Biology. 14: 254. PMID 25471595 DOI: 10.1186/S12862-014-0254-4  0.68
2014 Holmes WM, Mannakee BK, Gutenkunst RN, Serio TR. Loss of amino-terminal acetylation suppresses a prion phenotype by modulating global protein folding. Nature Communications. 5: 4383. PMID 25023910 DOI: 10.1038/Ncomms5383  0.68
2014 Veeramah KR, Gutenkunst RN, Woerner AE, Watkins JC, Hammer MF. Evidence for increased levels of positive and negative selection on the X chromosome versus autosomes in humans. Molecular Biology and Evolution. 31: 2267-82. PMID 24830675 DOI: 10.1093/Molbev/Msu166  0.68
2014 Jilkine A, Gutenkunst RN. Effect of dedifferentiation on time to mutation acquisition in stem cell-driven cancers. Plos Computational Biology. 10: e1003481. PMID 24603301 DOI: 10.1371/Journal.Pcbi.1003481  0.68
2013 Ma X, Kelley JL, Eilertson K, Musharoff S, Degenhardt JD, Martins AL, Vinar T, Kosiol C, Siepel A, Gutenkunst RN, Bustamante CD. Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii). Plos One. 8: e77175. PMID 24194868 DOI: 10.1371/Journal.Pone.0077175  0.68
2013 Smith AM, Adler FR, Ribeiro RM, Gutenkunst RN, McAuley JL, McCullers JA, Perelson AS. Kinetics of coinfection with influenza A virus and Streptococcus pneumoniae. Plos Pathogens. 9: e1003238. PMID 23555251 DOI: 10.1371/Journal.Ppat.1003238  0.68
2012 Xu X, Liu X, Ge S, Jensen JD, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li J, He W, Zhang G, Zheng X, Zhang F, et al. Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nature Biotechnology. 30: 105-11. PMID 22158310 DOI: 10.1038/Nbt.2050  0.68
2011 Skar H, Gutenkunst RN, Wilbe Ramsay K, Alaeus A, Albert J, Leitner T. Daily sampling of an HIV-1 patient with slowly progressing disease displays persistence of multiple env subpopulations consistent with neutrality. Plos One. 6: e21747. PMID 21829600 DOI: 10.1371/Journal.Pone.0021747  0.68
2011 Gravel S, Henn BM, Gutenkunst RN, Indap AR, Marth GT, Clark AG, Yu F, Gibbs RA, Bustamante CD. Demographic history and rare allele sharing among human populations. Proceedings of the National Academy of Sciences of the United States of America. 108: 11983-8. PMID 21730125 DOI: 10.1073/Pnas.1019276108  0.68
2011 Chylek LA, Hu B, Blinov ML, Emonet T, Faeder JR, Goldstein B, Gutenkunst RN, Haugh JM, Lipniacki T, Posner RG, Yang J, Hlavacek WS. Guidelines for visualizing and annotating rule-based models. Molecular Biosystems. 7: 2779-95. PMID 21647530 DOI: 10.1039/C1Mb05077J  0.68
2011 Gutenkunst RN, Coombs D, Starr T, Dustin ML, Goldstein B. A biophysical model of cell adhesion mediated by immunoadhesin drugs and antibodies. Plos One. 6: e19701. PMID 21629715 DOI: 10.1371/Journal.Pone.0019701  0.68
2011 Smith AM, Adler FR, McAuley JL, Gutenkunst RN, Ribeiro RM, McCullers JA, Perelson AS. Effect of 1918 PB1-F2 expression on influenza A virus infection kinetics. Plos Computational Biology. 7: e1001081. PMID 21379324 DOI: 10.1371/Journal.Pcbi.1001081  0.68
2011 Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Gutenkunst RN, et al. Comparative and demographic analysis of orang-utan genomes. Nature. 469: 529-33. PMID 21270892 DOI: 10.1038/Nature09687  0.68
2010 Colvin J, Monine MI, Gutenkunst RN, Hlavacek WS, Von Hoff DD, Posner RG. RuleMonkey: software for stochastic simulation of rule-based models. Bmc Bioinformatics. 11: 404. PMID 20673321 DOI: 10.1186/1471-2105-11-404  0.68
2010 Ramachandran S, Tang H, Gutenkunst RN, Bustamante CD. Genetics and genomics of human population structure Vogel and Motulsky's Human Genetics: Problems and Approaches (Fourth Edition). 589-615. DOI: 10.1007/978-3-540-37654-5_22  0.68
2009 Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD. Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. Plos Genetics. 5: e1000695. PMID 19851460 DOI: 10.1371/Journal.Pgen.1000695  0.68
2009 Andrés AM, Hubisz MJ, Indap A, Torgerson DG, Degenhardt JD, Boyko AR, Gutenkunst RN, White TJ, Green ED, Bustamante CD, Clark AG, Nielsen R. Targets of balancing selection in the human genome. Molecular Biology and Evolution. 26: 2755-64. PMID 19713326 DOI: 10.1093/Molbev/Msp190  0.68
2009 Nielsen R, Hubisz MJ, Hellmann I, Torgerson D, Andrés AM, Albrechtsen A, Gutenkunst R, Adams MD, Cargill M, Boyko A, Indap A, Bustamante CD, Clark AG. Darwinian and demographic forces affecting human protein coding genes. Genome Research. 19: 838-49. PMID 19279335 DOI: 10.1101/Gr.088336.108  0.68
2009 Auton A, Bryc K, Boyko AR, Lohmueller KE, Novembre J, Reynolds A, Indap A, Wright MH, Degenhardt JD, Gutenkunst RN, King KS, Nelson MR, Bustamante CD. Global distribution of genomic diversity underscores rich complex history of continental human populations Genome Research. 19: 795-803. PMID 19218534 DOI: 10.1101/Gr.088898.108  0.68
2008 Casey FP, Waterfall JJ, Gutenkunst RN, Myers CR, Sethna JP. Variational method for estimating the rate of convergence of Markov-chain Monte Carlo algorithms. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 046704. PMID 18999558 DOI: 10.1103/Physreve.78.046704  0.68
2008 Daniels BC, Chen YJ, Sethna JP, Gutenkunst RN, Myers CR. Sloppiness, robustness, and evolvability in systems biology. Current Opinion in Biotechnology. 19: 389-95. PMID 18620054 DOI: 10.1016/J.Copbio.2008.06.008  0.68
2007 Gutenkunst RN, Casey FP, Waterfall JJ, Myers CR, Sethna JP. Extracting falsifiable predictions from sloppy models. Annals of the New York Academy of Sciences. 1115: 203-11. PMID 17925353 DOI: 10.1196/Annals.1407.003  0.68
2007 Gutenkunst RN, Waterfall JJ, Casey FP, Brown KS, Myers CR, Sethna JP. Universally sloppy parameter sensitivities in systems biology models. Plos Computational Biology. 3: 1871-78. PMID 17922568 DOI: 10.1371/Journal.Pcbi.0030189  0.68
2007 Casey FP, Baird D, Feng Q, Gutenkunst RN, Waterfall JJ, Myers CR, Brown KS, Cerione RA, Sethna JP. Optimal experimental design in an epidermal growth factor receptor signalling and down-regulation model. Iet Systems Biology. 1: 190-202. PMID 17591178 DOI: 10.1049/Iet-Syb:20060065  0.68
2007 Gutenkunst R, Newlands N, Lutcavage M, Edelstein-Keshet L. Inferring resource distributions from Atlantic bluefin tuna movements: an analysis based on net displacement and length of track. Journal of Theoretical Biology. 245: 243-57. PMID 17140603 DOI: 10.1016/J.Jtbi.2006.10.014  0.68
2007 Myers CR, Gutenkunst RN, Sethna JP. Python unleashed on systems biology Computing in Science and Engineering. 9: 34-37. DOI: 10.1109/Mcse.2007.60  0.68
2006 Waterfall JJ, Casey FP, Gutenkunst RN, Brown KS, Myers CR, Brouwer PW, Elser V, Sethna JP. Sloppy-model universality class and the Vandermonde matrix. Physical Review Letters. 97: 150601. PMID 17155311 DOI: 10.1103/Physrevlett.97.150601  0.68
2003 Black ED, Gutenkunst RN. An introduction to signal extraction in interferometric gravitational wave detectors American Journal of Physics. 71: 365-378. DOI: 10.1119/1.1531578  0.68
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