Lucy J. Colwell, Ph.D. - Publications

Affiliations: 
2010 Harvard University, Cambridge, MA, United States 
Area:
Fluid Mechanics

18/36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Falk MJ, Duwel A, Colwell LJ, Brenner MP. Collagen-Inspired Self-Assembly of Twisted Filaments. Physical Review Letters. 123: 238102. PMID 31868483 DOI: 10.1103/Physrevlett.123.238102  0.52
2019 Kimchi O, Cragnolini T, Brenner MP, Colwell LJ. A Polymer Physics Framework for the Entropy of Arbitrary Pseudoknots. Biophysical Journal. 117: 520-532. PMID 31353036 DOI: 10.1016/J.Bpj.2019.06.037  0.52
2019 McCloskey K, Taly A, Monti F, Brenner MP, Colwell LJ. Using attribution to decode binding mechanism in neural network models for chemistry. Proceedings of the National Academy of Sciences of the United States of America. PMID 31127041 DOI: 10.1073/Pnas.1820657116  0.52
2017 Lee AA, Brenner MP, Colwell LJ. Optimal Design of Experiments by Combining Coarse and Fine Measurements. Physical Review Letters. 119: 208101. PMID 29219382 DOI: 10.1103/Physrevlett.119.208101  0.52
2016 Lee AA, Brenner MP, Colwell LJ. Predicting protein-ligand affinity with a random matrix framework. Proceedings of the National Academy of Sciences of the United States of America. PMID 27856761 DOI: 10.1073/Pnas.1611138113  0.52
2015 Townsend PD, Rodgers TL, Glover LC, Korhonen HJ, Richards SA, Colwell LJ, Pohl E, Wilson MR, Hodgson DR, McLeish TC, Cann MJ. The Role of Protein-Ligand Contacts in Allosteric Regulation of the Escherichia coli Catabolite Activator Protein. The Journal of Biological Chemistry. PMID 26187469 DOI: 10.1074/Jbc.M115.669267  0.52
2015 Te?ileanu T, Colwell LJ, Leibler S. Protein sectors: statistical coupling analysis versus conservation. Plos Computational Biology. 11: e1004091. PMID 25723535 DOI: 10.1371/Journal.Pcbi.1004091  0.52
2014 Colwell LJ, Brenner MP, Murray AW. Conservation weighting functions enable covariance analyses to detect functionally important amino acids. Plos One. 9: e107723. PMID 25379728 DOI: 10.1371/Journal.Pone.0107723  0.52
2014 Colwell LJ, Qin Y, Huntley M, Manta A, Brenner MP. Feynman-Hellmann theorem and signal identification from sample covariance matrices Physical Review X. 4. DOI: 10.1103/Physrevx.4.031032  0.52
2013 Dwyer RS, Ricci DP, Colwell LJ, Silhavy TJ, Wingreen NS. Predicting functionally informative mutations in Escherichia coli BamA using evolutionary covariance analysis. Genetics. 195: 443-55. PMID 23934888 DOI: 10.1534/Genetics.113.155861  0.52
2012 Perica T, Marsh JA, Sousa FL, Natan E, Colwell LJ, Ahnert SE, Teichmann SA. The emergence of protein complexes: quaternary structure, dynamics and allostery. Colworth Medal Lecture. Biochemical Society Transactions. 40: 475-91. PMID 22616857 DOI: 10.1042/Bst20120056  0.52
2012 Hopf TA, Colwell LJ, Sheridan R, Rost B, Sander C, Marks DS. Three-dimensional structures of membrane proteins from genomic sequencing. Cell. 149: 1607-21. PMID 22579045 DOI: 10.1016/J.Cell.2012.04.012  0.52
2012 Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, et al. The interface of protein structure, protein biophysics, and molecular evolution. Protein Science : a Publication of the Protein Society. 21: 769-85. PMID 22528593 DOI: 10.1002/Pro.2071  0.52
2012 Beh LY, Colwell LJ, Francis NJ. A core subunit of Polycomb repressive complex 1 is broadly conserved in function but not primary sequence. Proceedings of the National Academy of Sciences of the United States of America. 109: E1063-71. PMID 22517748 DOI: 10.1073/Pnas.1118678109  0.52
2011 Marks DS, Colwell LJ, Sheridan R, Hopf TA, Pagnani A, Zecchina R, Sander C. Protein 3D structure computed from evolutionary sequence variation. Plos One. 6: e28766. PMID 22163331 DOI: 10.1371/Journal.Pone.0028766  0.52
2010 Colwell LJ, Brenner MP, Ribbeck K. Charge as a selection criterion for translocation through the nuclear pore complex. Plos Computational Biology. 6: e1000747. PMID 20421988 DOI: 10.1371/Journal.Pcbi.1000747  0.52
2010 Colwell LJ, Brenner MP, Ribbeck K. Charge as a selection criterion for translocation through the nuclear pore complex Plos Computational Biology. 6. DOI: 10.1371/journal.pcbi.1000747  0.52
2009 Colwell LJ, Brenner MP. Action potential initiation in the Hodgkin-Huxley model Plos Computational Biology. 5. PMID 19148265 DOI: 10.1371/Journal.Pcbi.1000265  0.52
Low-probability matches
2021 Bryant DH, Bashir A, Sinai S, Jain NK, Ogden PJ, Riley PF, Church GM, Colwell LJ, Kelsic ED. Deep diversification of an AAV capsid protein by machine learning. Nature Biotechnology. PMID 33574611 DOI: 10.1038/s41587-020-00793-4  0.01
2020 Cervettini D, Tang S, Fried SD, Willis JCW, Funke LFH, Colwell LJ, Chin JW. Rapid discovery and evolution of orthogonal aminoacyl-tRNA synthetase-tRNA pairs. Nature Biotechnology. PMID 32284585 DOI: 10.1038/S41587-020-0479-2  0.01
2020 Bansode S, Bashtanova U, Li R, Clark J, Müller KH, Puszkarska A, Goldberga I, Chetwood HH, Reid DG, Colwell LJ, Skepper JN, Shanahan CM, Schitter G, Mesquida P, Duer MJ. Glycation changes molecular organization and charge distribution in type I collagen fibrils. Scientific Reports. 10: 3397. PMID 32099005 DOI: 10.1038/S41598-020-60250-9  0.01
2019 Carter B, Bileschi M, Smith J, Sanderson T, Bryant D, Belanger D, Colwell LJ. Critiquing Protein Family Classification Models Using Sufficient Input Subsets. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 31874057 DOI: 10.1089/Cmb.2019.0339  0.01
2019 Sundar V, Colwell L. The Effect of Debiasing Protein-Ligand Binding Data on Generalization. Journal of Chemical Information and Modeling. 60: 56-62. PMID 31825609 DOI: 10.1021/Acs.Jcim.9B00415  0.01
2019 Norman RA, Ambrosetti F, Bonvin AMJJ, Colwell LJ, Kelm S, Kumar S, Krawczyk K. Computational approaches to therapeutic antibody design: established methods and emerging trends. Briefings in Bioinformatics. PMID 31626279 DOI: 10.1093/Bib/Bbz095  0.01
2019 Kimchi O, Cragnolini T, Garmann R, Manoharan VN, Brenner MP, Colwell LJ. RNA Structure and Kinetics Including Pseudoknots through Complete Landscape Enumeration Biophysical Journal. 116: 353a-354a. DOI: 10.1016/J.Bpj.2018.11.1922  0.01
2018 Chow WY, Forman CJ, Bihan D, Puszkarska AM, Rajan R, Reid DG, Slatter DA, Colwell LJ, Wales DJ, Farndale RW, Duer MJ. Proline provides site-specific flexibility for in vivo collagen. Scientific Reports. 8: 13809. PMID 30218106 DOI: 10.1038/S41598-018-31937-X  0.01
2018 Mitchell LS, Colwell LJ. Analysis of nanobody paratopes reveals greater diversity than classical antibodies. Protein Engineering, Design & Selection : Peds. PMID 30053276 DOI: 10.1093/Protein/Gzy017  0.01
2018 Mitchell LS, Colwell LJ. Comparative Analysis of Nanobody Sequence and Structure Data. Proteins. PMID 29569425 DOI: 10.1002/Prot.25497  0.01
2018 Colwell LJ. Statistical and machine learning approaches to predicting protein-ligand interactions. Current Opinion in Structural Biology. 49: 123-128. PMID 29452923 DOI: 10.1016/J.Sbi.2018.01.006  0.01
2018 Qin C, Colwell LJ. Power law tails in phylogenetic systems. Proceedings of the National Academy of Sciences of the United States of America. PMID 29311320 DOI: 10.1073/Pnas.1711913115  0.01
2016 Bitbol AF, Dwyer RS, Colwell LJ, Wingreen NS. Inferring interaction partners from protein sequences. Proceedings of the National Academy of Sciences of the United States of America. PMID 27663738 DOI: 10.1073/Pnas.1606762113  0.01
2007 Stec K. Characteristics of seismic activity of the Upper Silesian Coal Basin in Poland Geophysical Journal International. 168: 757-768. DOI: 10.1111/j.1365-246X.2006.03227.x  0.01
1998 Colwell LJ, Prather CM, Phillips SF, Zinsmeister AR. Effects of an irritable bowel syndrome educational class on health-promoting behaviors and symptoms. The American Journal of Gastroenterology. 93: 901-5. PMID 9647015 DOI: 10.1111/j.1572-0241.1998.00273.x  0.01
1993 Kim CH, Cameron AJ, Hsu JJ, Talley NJ, Trastek VF, Pairolero PC, O'Connor MK, Colwell LJ, Zinsmeister AR. Achalasia: prospective evaluation of relationship between lower esophageal sphincter pressure, esophageal transit, and esophageal diameter and symptoms in response to pneumatic dilation. Mayo Clinic Proceedings. 68: 1067-73. PMID 8231271  0.01
1993 Talley NJ, Kramlinger KG, Caroline Burton M, Colwell LJ, Zinsmeister AR. Psychiatric disorders and childhood abuse in the irritable bowel syndrome European Journal of Gastroenterology and Hepatology. 5: 647-654.  0.01
1991 Lindor KD, Wiesner RH, Colwell LJ, Steiner B, Beaver S, LaRusso NF. The combination of prednisone and colchicine in patients with primary sclerosing cholangitis. The American Journal of Gastroenterology. 86: 57-61. PMID 1986556  0.01
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