Year |
Citation |
Score |
2021 |
Akey CW, Singh D, Ouch C, Echeverria I, Nudelman I, Varberg JM, Yu Z, Fang F, Shi Y, Wang J, Salzberg D, Song K, Xu C, Gumbart JC, Suslov S, ... ... Villa E, et al. Comprehensive structure and functional adaptations of the yeast nuclear pore complex. Cell. PMID 34982960 DOI: 10.1016/j.cell.2021.12.015 |
0.689 |
|
2021 |
Lu S, Ye Q, Singh D, Cao Y, Diedrich JK, Yates JR, Villa E, Cleveland DW, Corbett KD. The SARS-CoV-2 nucleocapsid phosphoprotein forms mutually exclusive condensates with RNA and the membrane-associated M protein. Nature Communications. 12: 502. PMID 33479198 DOI: 10.1038/s41467-020-20768-y |
0.559 |
|
2020 |
Yu H, Lu S, Gasior K, Singh D, Vazquez-Sanchez S, Tapia O, Toprani D, Beccari MS, Yates JR, Da Cruz S, Newby JM, Lafarga M, Gladfelter AS, Villa E, Cleveland DW. HSP70 chaperones RNA-free TDP-43 into anisotropic intranuclear liquid spherical shells. Science (New York, N.Y.). PMID 33335017 DOI: 10.1126/science.abb4309 |
0.542 |
|
2020 |
Deniston CK, Salogiannis J, Mathea S, Snead DM, Lahiri I, Matyszewski M, Donosa O, Watanabe R, Böhning J, Shiau AK, Knapp S, Villa E, Reck-Peterson SL, Leschziner AE. Structure of LRRK2 in Parkinson's disease and model for microtubule interaction. Nature. PMID 32814344 DOI: 10.1038/S41586-020-2673-2 |
0.324 |
|
2020 |
Watanabe R, Buschauer R, Böhning J, Audagnotto M, Lasker K, Lu TW, Boassa D, Taylor S, Villa E. The In Situ Structure of Parkinson's Disease-Linked LRRK2. Cell. PMID 32783917 DOI: 10.1016/J.Cell.2020.08.004 |
0.331 |
|
2020 |
Lu S, Ye Q, Singh D, Villa E, Cleveland DW, Corbett KD. The SARS-CoV-2 Nucleocapsid phosphoprotein forms mutually exclusive condensates with RNA and the membrane-associated M protein. Biorxiv : the Preprint Server For Biology. PMID 32766587 DOI: 10.1101/2020.07.30.228023 |
0.558 |
|
2020 |
Wagner FR, Watanabe R, Schampers R, Singh D, Persoon H, Schaffer M, Fruhstorfer P, Plitzko J, Villa E. Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography. Nature Protocols. PMID 32405053 DOI: 10.1038/S41596-020-0320-X |
0.633 |
|
2020 |
Bianchi DM, Breuer M, Lam V, Poddar A, Wise KS, Hutchison CA, Smith HO, Villa E, Ha T, Glass JI, Luthey-Schulten Z. Modeling the Lipid Metabolism of a Genetically Minimal Cell Biophysical Journal. 118: 346a. DOI: 10.1016/J.Bpj.2019.11.1999 |
0.414 |
|
2019 |
Khanna K, Lopez-Garrido J, Zhao Z, Watanabe R, Yuan Y, Sugie J, Pogliano K, Villa E. The molecular architecture of engulfment during sporulation. Elife. 8. PMID 31282858 DOI: 10.7554/Elife.45257 |
0.368 |
|
2019 |
Chaikeeratisak V, Khanna K, Nguyen KT, Sugie J, Egan ME, Erb ML, Vavilina A, Nonejuie P, Nieweglowska E, Pogliano K, Agard DA, Villa E, Pogliano J. Viral Capsid Trafficking along Treadmilling Tubulin Filaments in Bacteria. Cell. 177: 1771-1780.e12. PMID 31199917 DOI: 10.1016/J.Cell.2019.05.032 |
0.31 |
|
2018 |
Lopez-Garrido J, Ojkic N, Khanna K, Wagner FR, Villa E, Endres RG, Pogliano K. Chromosome Translocation Inflates Bacillus Forespores and Impacts Cellular Morphology. Cell. 172: 758-770.e14. PMID 29425492 DOI: 10.1016/J.Cell.2018.01.027 |
0.335 |
|
2017 |
Earnest TM, Watanabe R, Stone JE, Mahamid J, Baumeister W, Villa E, Luthey-Schulten Z. Challenges of Integrating Stochastic Dynamics and Cryo-Electron Tomograms in Whole-Cell Simulations. The Journal of Physical Chemistry. B. PMID 28291359 DOI: 10.1021/Acs.Jpcb.7B00672 |
0.545 |
|
2017 |
Chaikeeratisak V, Nguyen K, Khanna K, Brilot AF, Erb ML, Coker JK, Vavilina A, Newton GL, Buschauer R, Pogliano K, Villa E, Agard DA, Pogliano J. Assembly of a nucleus-like structure during viral replication in bacteria. Science (New York, N.Y.). 355: 194-197. PMID 28082593 DOI: 10.1126/Science.Aal2130 |
0.363 |
|
2017 |
Villa E, Watanabe R, Buschauer R, Khanna K, Lam V. Opening windows into the cell: bringing structure to cell biology using cryo-electron microscopy Acta Crystallographica Section a Foundations and Advances. 73: a417-a417. DOI: 10.1107/S0108767317095939 |
0.354 |
|
2017 |
Villa E, Watanabe R, Buschauer R, Khanna K, Lam V, Singla J, Alber F. Revealing the Native Molecular Architecture of the Nuclear Periphery using Cryo-Focused-Ion-Beam Milling, Light Microscopy and Electron Tomography Microscopy and Microanalysis. 23: 1248-1249. DOI: 10.1017/S1431927617006900 |
0.328 |
|
2016 |
Mahamid J, Pfeffer S, Schaffer M, Villa E, Danev R, Cuellar LK, Förster F, Hyman AA, Plitzko JM, Baumeister W. Visualizing the molecular sociology at the HeLa cell nuclear periphery. Science (New York, N.Y.). 351: 969-72. PMID 26917770 DOI: 10.1126/Science.Aad8857 |
0.553 |
|
2015 |
Engel BD, Schaffer M, Cuellar LK, Villa E, Plitzko JM, Baumeister W. Correction: Native architecture of the Chlamydomonas chloroplast revealed by in situ cryo-electron tomography. Elife. 4. PMID 26367339 DOI: 10.7554/Elife.11383 |
0.496 |
|
2015 |
Plaschka C, Larivière L, Wenzeck L, Seizl M, Hemann M, Tegunov D, Petrotchenko EV, Borchers CH, Baumeister W, Herzog F, Villa E, Cramer P. Architecture of the RNA polymerase II-Mediator core initiation complex. Nature. 518: 376-80. PMID 25652824 DOI: 10.1038/Nature14229 |
0.505 |
|
2015 |
Engel BD, Schaffer M, Kuhn Cuellar L, Villa E, Plitzko JM, Baumeister W. Native architecture of the Chlamydomonas chloroplast revealed by in situ cryo-electron tomography. Elife. 4. PMID 25584625 DOI: 10.7554/Elife.04889 |
0.561 |
|
2014 |
Villa E, Lasker K. Finding the right fit: chiseling structures out of cryo-electron microscopy maps. Current Opinion in Structural Biology. 25: 118-25. PMID 24814094 DOI: 10.1016/J.Sbi.2014.04.001 |
0.405 |
|
2014 |
Villa E, Schaffer M, Engel B, Plitzko J, Baumeister W. Structural cell biology: Preparing specimens for cryo-electron tomography using focused-ion-beam milling Microscopy and Microanalysis. 20: 1222-1223. DOI: 10.1017/S1431927614007843 |
0.491 |
|
2013 |
Jasnin M, Asano S, Gouin E, Hegerl R, Plitzko JM, Villa E, Cossart P, Baumeister W. Three-dimensional architecture of actin filaments in Listeria monocytogenes comet tails. Proceedings of the National Academy of Sciences of the United States of America. 110: 20521-6. PMID 24306931 DOI: 10.1073/Pnas.1320155110 |
0.489 |
|
2013 |
Villa E, Schaffer M, Plitzko JM, Baumeister W. Opening windows into the cell: focused-ion-beam milling for cryo-electron tomography. Current Opinion in Structural Biology. 23: 771-7. PMID 24090931 DOI: 10.1016/J.Sbi.2013.08.006 |
0.511 |
|
2013 |
Armache JP, Anger AM, Márquez V, Franckenberg S, Fröhlich T, Villa E, Berninghausen O, Thomm M, Arnold GJ, Beckmann R, Wilson DN. Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution. Nucleic Acids Research. 41: 1284-93. PMID 23222135 DOI: 10.1093/Nar/Gks1259 |
0.415 |
|
2013 |
Schaffer M, Villa E, Engel B, Fukuda Y, Laugks T, Rigort A, Schüler M, Schwarz A, Bäuerlein F, Mahami J, Baumeister W, Plitzko J. Reproducibility in Focused Ion Beam sample preparation - a Key Requirement for Cryo-Electron Tomography of Eukaryotic Cells Microscopy and Microanalysis. 19: 876-877. DOI: 10.1017/S1431927613006375 |
0.481 |
|
2013 |
Plitzko J, Villa E, Engel B, Fukuda Y, Laugks T, Schaffer M, Schwarz A, Baeuerlein F, Mahamid J, Fitting Kourkoutis L, Rigort A, Baumeister W. Doing Structural Biology in situ - Prospects and Challenges Microscopy and Microanalysis. 19: 424-425. DOI: 10.1017/S143192761300411X |
0.492 |
|
2013 |
Villa E, Schaffer M, Rigort A, Bauerlein F, Plitzko J, Baumeister W. Opening Windows into the Cell: Focused Ion Beam Micromachining of Eukaryotic Cells for Cryo-Electron Tomography Biophysical Journal. 104: 353a-354a. DOI: 10.1016/J.Bpj.2012.11.1961 |
0.563 |
|
2012 |
Beck F, Unverdorben P, Bohn S, Schweitzer A, Pfeifer G, Sakata E, Nickell S, Plitzko JM, Villa E, Baumeister W, Förster F. Near-atomic resolution structural model of the yeast 26S proteasome. Proceedings of the National Academy of Sciences of the United States of America. 109: 14870-5. PMID 22927375 DOI: 10.1073/Pnas.1213333109 |
0.558 |
|
2012 |
Rigort A, Villa E, Bäuerlein FJ, Engel BD, Plitzko JM. Integrative approaches for cellular cryo-electron tomography: correlative imaging and focused ion beam micromachining. Methods in Cell Biology. 111: 259-81. PMID 22857933 DOI: 10.1016/B978-0-12-416026-2.00014-5 |
0.353 |
|
2012 |
Schönegge AM, Villa E, Förster F, Hegerl R, Peters J, Baumeister W, Rockel B. The structure of human tripeptidyl peptidase II as determined by a hybrid approach Structure. 20: 593-603. PMID 22483107 DOI: 10.1016/J.Str.2012.01.025 |
0.567 |
|
2012 |
Rigort A, Bäuerlein FJ, Villa E, Eibauer M, Laugks T, Baumeister W, Plitzko JM. Focused ion beam micromachining of eukaryotic cells for cryoelectron tomography. Proceedings of the National Academy of Sciences of the United States of America. 109: 4449-54. PMID 22392984 DOI: 10.1073/Pnas.1201333109 |
0.511 |
|
2012 |
Lasker K, Förster F, Bohn S, Walzthoeni T, Villa E, Unverdorben P, Beck F, Aebersold R, Sali A, Baumeister W. Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach. Proceedings of the National Academy of Sciences of the United States of America. 109: 1380-7. PMID 22307589 DOI: 10.1073/Pnas.1120559109 |
0.54 |
|
2011 |
Becker T, Armache JP, Jarasch A, Anger AM, Villa E, Sieber H, Motaal BA, Mielke T, Berninghausen O, Beckmann R. Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome. Nature Structural & Molecular Biology. 18: 715-20. PMID 21623367 DOI: 10.1038/Nsmb.2057 |
0.386 |
|
2011 |
Trabuco LG, Schreiner E, Gumbart J, Hsin J, Villa E, Schulten K. Applications of the molecular dynamics flexible fitting method. Journal of Structural Biology. 173: 420-7. PMID 20932910 DOI: 10.1016/J.Jsb.2010.09.024 |
0.794 |
|
2011 |
Plitzko J, Rigort A, Baeuerlein F, Laugks T, Villa E, Baumeister W. Hybrid Imaging-Novel Approaches and Recent Advances in Correlative Microscopy Microscopy and Microanalysis. 17: 964-965. DOI: 10.1017/S1431927611005691 |
0.455 |
|
2010 |
Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, et al. Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution. Proceedings of the National Academy of Sciences of the United States of America. 107: 19748-53. PMID 20980660 DOI: 10.1073/Pnas.1009999107 |
0.423 |
|
2010 |
Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, et al. Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome. Proceedings of the National Academy of Sciences of the United States of America. 107: 19754-9. PMID 20974910 DOI: 10.1073/Pnas.1010005107 |
0.396 |
|
2010 |
Förster F, Villa E. Integration of cryo-EM with atomic and protein-protein interaction data. Methods in Enzymology. 483: 47-72. PMID 20888469 DOI: 10.1016/S0076-6879(10)83003-4 |
0.454 |
|
2010 |
Ben-Harush K, Maimon T, Patla I, Villa E, Medalia O. Visualizing cellular processes at the molecular level by cryo-electron tomography. Journal of Cell Science. 123: 7-12. PMID 20016061 DOI: 10.1242/Jcs.060111 |
0.383 |
|
2009 |
Sener M, Hsin J, Trabuco LG, Villa E, Qian P, Hunter CN, Schulten K. Structural model and excitonic properties of the dimeric RC-LH1-PufX complex from Rhodobacter sphaeroides. Chemical Physics. 357: 188-197. PMID 20161332 DOI: 10.1016/J.Chemphys.2009.01.003 |
0.776 |
|
2009 |
Seidelt B, Innis CA, Wilson DN, Gartmann M, Armache JP, Villa E, Trabuco LG, Becker T, Mielke T, Schulten K, Steitz TA, Beckmann R. Structural insight into nascent polypeptide chain-mediated translational stalling. Science (New York, N.Y.). 326: 1412-5. PMID 19933110 DOI: 10.1126/Science.1177662 |
0.745 |
|
2009 |
Gumbart J, Trabuco LG, Schreiner E, Villa E, Schulten K. Regulation of the protein-conducting channel by a bound ribosome. Structure (London, England : 1993). 17: 1453-64. PMID 19913480 DOI: 10.1016/J.Str.2009.09.010 |
0.777 |
|
2009 |
Hsin J, Gumbart J, Trabuco LG, Villa E, Qian P, Hunter CN, Schulten K. Protein-induced membrane curvature investigated through molecular dynamics flexible fitting. Biophysical Journal. 97: 321-9. PMID 19580770 DOI: 10.1016/J.Bpj.2009.04.031 |
0.774 |
|
2009 |
Trabuco LG, Villa E, Schreiner E, Harrison CB, Schulten K. Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography. Methods (San Diego, Calif.). 49: 174-80. PMID 19398010 DOI: 10.1016/J.Ymeth.2009.04.005 |
0.784 |
|
2009 |
Villa E, Sengupta J, Trabuco LG, LeBarron J, Baxter WT, Shaikh TR, Grassucci RA, Nissen P, Ehrenberg M, Schulten K, Frank J. Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis. Proceedings of the National Academy of Sciences of the United States of America. 106: 1063-8. PMID 19122150 DOI: 10.1073/Pnas.0811370106 |
0.769 |
|
2008 |
Trabuco LG, Villa E, Mitra K, Frank J, Schulten K. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure (London, England : 1993). 16: 673-83. PMID 18462672 DOI: 10.1016/J.Str.2008.03.005 |
0.792 |
|
2008 |
Villa E, Trabuco L, Mitra K, Sengupta J, Frank J, Schulten K. Merging data from cryo-EM and X-ray crystallography to reveal biomolecular function Acta Crystallographica Section a Foundations of Crystallography. 64: C47-C47. DOI: 10.1107/S0108767308098498 |
0.54 |
|
2006 |
Gao M, Sotomayor M, Villa E, Lee EH, Schulten K. Molecular mechanisms of cellular mechanics. Physical Chemistry Chemical Physics : Pccp. 8: 3692-706. PMID 16896432 DOI: 10.1039/B606019F |
0.715 |
|
2005 |
Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, Chipot C, Skeel RD, Kalé L, Schulten K. Scalable molecular dynamics with NAMD. Journal of Computational Chemistry. 26: 1781-802. PMID 16222654 DOI: 10.1002/Jcc.20289 |
0.717 |
|
2005 |
Villa E, Balaeff A, Schulten K. Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation. Proceedings of the National Academy of Sciences of the United States of America. 102: 6783-8. PMID 15863616 DOI: 10.1073/Pnas.0409387102 |
0.749 |
|
2004 |
Villa E, Balaeff A, Mahadevan L, Schulten K. Multiscale Method for Simulating Protein-DNA Complexes Multiscale Modeling & Simulation. 2: 527-553. DOI: 10.1137/040604789 |
0.743 |
|
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