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Elijah Roberts, Ph.D. - Publications

Affiliations: 
2010 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Prediction of Protein Structure and Function
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Anderson C, Reiss I, Zhou C, Cho A, Siddiqi H, Mormann B, Avelis CM, Deford P, Bergland A, Roberts E, Taylor J, Vasiliauskas D, Johnston RJ. Natural variation in stochastic photoreceptor specification and color preference in Drosophila. Elife. 6. PMID 29251595 DOI: 10.7554/Elife.29593  0.302
2016 Klein M, Sharma R, Bohrer C, Avelis C, Roberts E. Biospark: Scalable analysis of large numerical data sets from biological simulations and experiments using Hadoop and Spark. Bioinformatics (Oxford, England). PMID 27663493 DOI: 10.1093/Bioinformatics/Btw614  0.302
2016 Sharma R, Roberts E. Gradient sensing by a bistable regulatory motif enhances signal amplification but decreases accuracy in individual cells. Physical Biology. 13: 036003. PMID 27171185 DOI: 10.1088/1478-3975/13/3/036003  0.319
2015 Roberts E, Be'er S, Bohrer C, Sharma R, Assaf M. Dynamics of simple gene-network motifs subject to extrinsic fluctuations. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 062717. PMID 26764737 DOI: 10.1103/Physreve.92.062717  0.362
2014 Hallock MJ, Stone JE, Roberts E, Fry C, Luthey-Schulten Z. Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations. Parallel Computing. 40: 86-99. PMID 24882911 DOI: 10.1016/j.parco.2014.03.009  0.517
2014 Roberts E. Cellular and molecular structure as a unifying framework for whole-cell modeling. Current Opinion in Structural Biology. 25: 86-91. PMID 24509245 DOI: 10.1016/J.Sbi.2014.01.005  0.346
2014 Earnest TM, Roberts E, Assaf M, Dahmen K, Luthey-Schulten Z. Corrigendum: DNA looping increases the range of bistability in a stochastic model of the lac genetic switch (2013 Phys. Biol. 10 026002) Physical Biology. 11: 029501. DOI: 10.1088/1478-3975/11/2/029501  0.547
2014 Labhsetwar P, Cole JA, Roberts E, Price ND, Luthey-Schulten ZA. Erratum: Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population (Proceedings of the National Academy of Sciences of the United States of America (2013) 110(14006-14011) DOI:10.1073/pnas.1222569110) Proceedings of the National Academy of Sciences of the United States of America. 111. DOI: 10.1073/Pnas.1323512111  0.557
2013 Assaf M, Mobilia M, Roberts E. Cooperation dilemma in finite populations under fluctuating environments. Physical Review Letters. 111: 238101. PMID 24476306 DOI: 10.1103/Physrevlett.111.238101  0.332
2013 Assaf M, Roberts E, Luthey-Schulten Z, Goldenfeld N. Extrinsic noise driven phenotype switching in a self-regulating gene. Physical Review Letters. 111: 058102. PMID 23952448 DOI: 10.1103/Physrevlett.111.058102  0.585
2013 Labhsetwar P, Cole JA, Roberts E, Price ND, Luthey-Schulten ZA. Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population. Proceedings of the National Academy of Sciences of the United States of America. 110: 14006-11. PMID 23908403 DOI: 10.1073/Pnas.1222569110  0.58
2013 Earnest TM, Roberts E, Assaf M, Dahmen K, Luthey-Schulten Z. DNA looping increases the range of bistability in a stochastic model of the lac genetic switch. Physical Biology. 10: 026002. PMID 23406725 DOI: 10.1088/1478-3975/10/2/026002  0.591
2013 Roberts E, Stone JE, Luthey-Schulten Z. Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation. Journal of Computational Chemistry. 34: 245-55. PMID 23007888 DOI: 10.1002/Jcc.23130  0.565
2013 Roberts E, Assaf M. Extrinsic Noise Enhances Switching in Models of Cellular Decision Making Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.900  0.336
2013 Labhsetwar P, Cole J, Roberts E, Price N, Luthey-Schulten Z. Heterogenity in Protein Copy Numbers induces Metabolic Variability in Modeled E. coli Populations Biophysical Journal. 104: 495a. DOI: 10.1016/J.Bpj.2012.11.2731  0.588
2011 Assaf M, Roberts E, Luthey-Schulten Z. Determining the stability of genetic switches: explicitly accounting for mRNA noise. Physical Review Letters. 106: 248102. PMID 21770603 DOI: 10.1103/Physrevlett.106.248102  0.6
2011 Roberts E, Magis A, Ortiz JO, Baumeister W, Luthey-Schulten Z. Noise contributions in an inducible genetic switch: a whole-cell simulation study. Plos Computational Biology. 7: e1002010. PMID 21423716 DOI: 10.1371/Journal.Pcbi.1002010  0.614
2011 Assaf M, Roberts E, Luthey-Schulten Z. Determining the stability of genetic switches: Explicitly accounting for mRNA noise Physical Review Letters. 106. DOI: 10.1103/PhysRevLett.106.248102  0.504
2010 Roberts E, Magis AT, Luthey-Schulten Z. The Effects of Spatial Heterogeneity and in vivo Crowding on the Lac Genetic Circuit Biophysical Journal. 98: 430a. DOI: 10.1016/J.Bpj.2009.12.2331  0.381
2009 Chen K, Roberts E, Luthey-Schulten Z. Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4. Bmc Evolutionary Biology. 9: 179. PMID 19640295 DOI: 10.1186/1471-2148-9-179  0.573
2009 Roberts E, Stone JE, Sepúlveda L, Hwu WMW, Luthey-Schulten Z. Long time-scale simulations of in vivo diffusion using GPU hardware Ipdps 2009 - Proceedings of the 2009 Ieee International Parallel and Distributed Processing Symposium. DOI: 10.1109/IPDPS.2009.5160930  0.473
2008 Roberts E, Sethi A, Montoya J, Woese CR, Luthey-Schulten Z. Molecular signatures of ribosomal evolution. Proceedings of the National Academy of Sciences of the United States of America. 105: 13953-8. PMID 18768810 DOI: 10.1073/Pnas.0804861105  0.646
2007 Pogorelov TV, Autenrieth F, Roberts E, Luthey-Schulten ZA. Cytochrome c(2) Exit Strategy: Dissociation Studies and Evolutionary Implications. The Journal of Physical Chemistry. B. 111: 618-34. PMID 17228920 DOI: 10.1021/Jp064973I  0.667
2006 Roberts E, Eargle J, Wright D, Luthey-Schulten Z. MultiSeq: unifying sequence and structure data for evolutionary analysis. Bmc Bioinformatics. 7: 382. PMID 16914055 DOI: 10.1186/1471-2105-7-382  0.695
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