Kari J. Pederson, Ph.D. - Publications

Affiliations: 
2010 University of Washington, Seattle, Seattle, WA 
Area:
Physical and Biophysical Chemistry

24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Pederson K, Meints GA, Drobny GP. Base Dynamics in the I Protein Binding Site. The Journal of Physical Chemistry. B. 127: 7266-7275. PMID 37561575 DOI: 10.1021/acs.jpcb.3c03687  0.741
2017 Pederson K, Chalmers GR, Gao Q, Elnatan D, Ramelot TA, Ma LC, Montelione GT, Kennedy MA, Agard DA, Prestegard JH. NMR characterization of HtpG, the E. coli Hsp90, using sparse labeling with (13)C-methyl alanine. Journal of Biomolecular Nmr. PMID 28653216 DOI: 10.1007/S10858-017-0123-8  0.457
2017 Ramelot T, Pederson K, Wang H, Maglaqui M, Mao L, Xiao R, Acton T, Everett J, Prestegard J, Montelione G, Kennedy M. Alanine chemical shifts of the C-terminal dimerization domain (residues 511-624) of HtpG, the Hsp90 from Escherichia coli. Northeast Structural Genomics Consortium Target ER697C. Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27038  0.348
2017 Ramelot T, Pederson K, Wang H, Maglaqui M, Mao L, Xiao R, Acton T, Everett J, Prestegard J, Montelione G, Kennedy M. Alanine chemical shifts of the N-terminal domain (residues 1-215) of HtpG, the Hsp90 from Escherichia coli. Northeast Structural Genomics Consortium Target ER697A. Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27037  0.31
2016 Singh A, Tessier MB, Pederson K, Wang X, Venot AP, Boons GJ, Prestegard JH, Woods RJ. Extension and validation of the GLYCAM force field parameters for modeling glycosaminoglycans. Canadian Journal of Chemistry. 94: 927-935. PMID 28603292 DOI: 10.1139/Cjc-2015-0606  0.361
2015 Everett J, Tejero R, Murthy SB, Acton TB, Aramini JM, Baran MC, Benach J, Cort JR, Eletsky A, Forouhar F, Guan R, Kuzin AP, Lee HW, Liu G, Mani R, ... ... Pederson K, et al. A Community Resource of Experimental Data for NMR - X-ray Crystal Structure Pairs. Protein Science : a Publication of the Protein Society. PMID 26293815 DOI: 10.1002/Pro.2774  0.373
2015 Rosato A, Vranken W, Fogh RH, Ragan TJ, Tejero R, Pederson K, Lee HW, Prestegard JH, Yee A, Wu B, Lemak A, Houliston S, Arrowsmith CH, Kennedy M, Acton TB, et al. The second round of Critical Assessment of Automated Structure Determination of Proteins by NMR: CASD-NMR-2013. Journal of Biomolecular Nmr. PMID 26071966 DOI: 10.1007/S10858-015-9953-4  0.381
2015 Liu G, Lin Y, Koga N, Koga R, Xiao R, Janjua H, Pederson K, Acton TB, Kornhaber G, Everett JK, Baker D, Montelione GT. Solution NMR Structure of DE NOVO DESIGNED PROTEIN, Rossmann2x2 Fold, Northeast Structural Genomics Consortium (NESG) Target OR446 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2N3Z/Pdb  0.417
2014 Pederson K, Mitchell DA, Prestegard JH. Structural characterization of the DC-SIGN-Lewis(X) complex. Biochemistry. 53: 5700-9. PMID 25121780 DOI: 10.1021/Bi5005014  0.336
2014 Pulavarti SV, Huang YJ, Pederson K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Szyperski T. Solution NMR structures of immunoglobulin-like domains 7 and 12 from obscurin-like protein 1 contribute to the structural coverage of the Human Cancer Protein Interaction Network. Journal of Structural and Functional Genomics. 15: 209-14. PMID 24989974 DOI: 10.1007/S10969-014-9185-Y  0.354
2014 Prestegard JH, Agard DA, Moremen KW, Lavery LA, Morris LC, Pederson K. Sparse labeling of proteins: structural characterization from long range constraints. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 241: 32-40. PMID 24656078 DOI: 10.1016/J.Jmr.2013.12.012  0.324
2014 Eletsky A, Rotshteyn DJ, Pederson K, Shastry R, Maglaqui M, Janjua H, Xiao R, Everett JK, Montelione GT, Prestegard JH, Szyperski T. Solution NMR structure of beta-adaptin appendage domain of human adaptor protein complex 4 subunit beta, Northeast Structural Genomics Consortium (NESG) Target HR8998C Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Mj7/Pdb  0.332
2013 Pederson K, Shastry R, Kohan E, Janjua H, Xiao R, Acton TB, Everett JK, Montelione GT, Prestegard JH. Solution NMR Structure of E3 ubiquitin-protein ligase ZFP91 from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR7784A Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2M9A/Pdb  0.419
2013 Ertekin A, Janjua H, Kohan E, Shastry R, Pederson K, Prestegard JH, Montelione GT. Solution NMR Structure of Cyclin-dependent kinase 2-associated protein 2 (CDK2AP2, DOC-1R) from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR8910C Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2M1L/Pdb  0.387
2012 Ramelot TA, Yang Y, Pederson K, Shastry R, Kohan E, Janjua H, Xiao R, Acton TB, Everett JK, Prestegard JH, Montelione GT, Kennedy MA. Solution NMR Structure of the eukaryotic RNA recognition motif, RRM1, from the heterogeneous nuclear ribonucleoprotein H from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR8614A Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Lxu/Pdb  0.394
2012 Liu G, Xiao R, Janjua H, Hamilton K, Shastry R, Kohan E, Acton TB, Everett JK, Lee H, Pederson K, Huang YJ, Montelione GT. Solution NMR Structure of PH Domain of Tyrosine-protein kinase Tec from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR3504C Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Lul/Pdb  0.374
2012 Pulavarti S, Eletsky A, Sukumaran DK, Lee D, Kohan E, Janjua H, Xiao R, Acton TB, Everett JK, Pederson K, Prestegard J, Montelione GT, Szyperski T. Solution NMR Structure of Ig like domain (1277-1357) of Obscurin-like protein 1 from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR8578D Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Lu7/Pdb  0.416
2012 Liu G, Koga R, Koga N, Xiao R, Pederson K, Hamilton K, Kohan E, Acton T, Kornhaber G, Everett J, Baker D, Montelione G. SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, ROSSMANN 3x1 FOLD, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR157 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Lta/Pdb  0.41
2012 Liu G, Xiao R, Janjua H, Hamilton K, Shastry R, Kohan E, Acton T, Everett J, Pederson K, Huang Y, Montelione G. Solution NMR Structure CTD domain of NFU1 Iron-Sulfur Cluster Scaffold Homolog from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR2876C Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr19068  0.362
2009 Liu G, Koga R, Koga N, Xiao R, Pederson K, Hamilton K, Ciccosanti C, Acton TB, Everett JK, Baker D, Montelione GT. Solution NMR Structure de novo designed rossmann 2x2 fold protein, Northeast Structural Genomics Consortium (NESG) Target OR16 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Kpo/Pdb  0.41
2008 Echodu D, Goobes G, Shajani Z, Pederson K, Meints G, Varani G, Drobny G. Furanose dynamics in the HhaI methyltransferase target DNA studied by solution and solid-state NMR relaxation. The Journal of Physical Chemistry. B. 112: 13934-44. PMID 18844399 DOI: 10.1021/Jp801723X  0.592
2008 Pederson K, Meints GA, Shajani Z, Miller PA, Drobny GP. Backbone dynamics in the DNA HhaI protein binding site. Journal of the American Chemical Society. 130: 9072-9. PMID 18570423 DOI: 10.1021/Ja801243D  0.736
2008 Meints GA, Miller PA, Pederson K, Shajani Z, Drobny G. Solid-state nuclear magnetic resonance spectroscopy studies of furanose ring dynamics in the DNA HhaI binding site. Journal of the American Chemical Society. 130: 7305-14. PMID 18489097 DOI: 10.1021/Ja075775N  0.742
2005 Leskowitz GM, Ghaderi N, Olsen RA, Pederson K, Hatcher ME, Mueller LJ. The amide rotational barrier in isonicotinamide: Dynamic NMR and ab initio studies. The Journal of Physical Chemistry. A. 109: 1152-8. PMID 16833425 DOI: 10.1021/Jp0460689  0.413
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