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Andrew V. Colasanti, Ph.D. - Publications

Affiliations: 
2006 Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
conformation, properties, and interactions of nucleic acids
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Olson WK, Li S, Kaukonen T, Colasanti A, Xin Y, Lu XJ. Effects of Noncanonical Base Pairing on RNA Folding: Structural Context and Spatial Arrangements of G∙A Pairs. Biochemistry. PMID 31008589 DOI: 10.1021/Acs.Biochem.9B00122  0.627
2015 Singh G, Colasanti AV, Clauvelin N, Olson WK. Dynamics of the Nucleosome Core Particle Revealed from a New Database of High-Resolution X-Ray Crystallographic and Simulated Structures Biophysical Journal. 108: 541a. DOI: 10.1080/07391102.2013.786489  0.61
2014 Perez PJ, Clauvelin N, Grosner MA, Colasanti AV, Olson WK. What controls DNA looping? International Journal of Molecular Sciences. 15: 15090-108. PMID 25167135 DOI: 10.3390/Ijms150915090  0.698
2013 Colasanti AV, Grosner MA, Perez PJ, Clauvelin N, Lu XJ, Olson WK. Weak operator binding enhances simulated lac repressor-mediated DNA looping. Biopolymers. 99: 1070-81. PMID 23818216 DOI: 10.1002/Bip.22336  0.699
2013 Colasanti AV, Lu XJ, Olson WK. Analyzing and building nucleic acid structures with 3DNA. Journal of Visualized Experiments : Jove. e4401. PMID 23644419 DOI: 10.3791/4401  0.67
2012 Olson WK, Clauvelin N, Colasanti AV, Singh G, Zheng G. Insights into Gene Expression and Packaging from Computer Simulations. Biophysical Reviews. 4: 171-178. PMID 23139731 DOI: 10.1007/S12551-012-0093-8  0.687
2012 Kulaeva OI, Zheng G, Polikanov YS, Colasanti AV, Clauvelin N, Mukhopadhyay S, Sengupta AM, Studitsky VM, Olson WK. Internucleosomal interactions mediated by histone tails allow distant communication in chromatin. The Journal of Biological Chemistry. 287: 20248-57. PMID 22518845 DOI: 10.1074/Jbc.M111.333104  0.609
2010 Xu F, Colasanti AV, Li Y, Olson WK. Long-range effects of histone point mutations on DNA remodeling revealed from computational analyses of SIN-mutant nucleosome structures. Nucleic Acids Research. 38: 6872-82. PMID 20647418 DOI: 10.1093/Nar/Gkq506  0.671
2010 Zheng G, Colasanti AV, Lu XJ, Olson WK. 3DNALandscapes: a database for exploring the conformational features of DNA. Nucleic Acids Research. 38: D267-74. PMID 19906722 DOI: 10.1093/Nar/Gkp959  0.719
2009 Srinivasan AR, Sauers RR, Fenley MO, Boschitsch AH, Matsumoto A, Colasanti AV, Olson WK. Properties of the Nucleic-acid Bases in Free and Watson-Crick Hydrogen-bonded States: Computational Insights into the Sequence-dependent Features of Double-helical DNA. Biophysical Reviews. 1: 13-20. PMID 21218180 DOI: 10.1007/S12551-008-0003-2  0.645
2007 Tolstorukov MY, Colasanti AV, McCandlish DM, Olson WK, Zhurkin VB. A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning. Journal of Molecular Biology. 371: 725-38. PMID 17585938 DOI: 10.1016/J.Jmb.2007.05.048  0.694
2006 Olson WK, Colasanti AV, Li Y, Ge W, Zheng G, Zhurkin VB. DNA simulation benchmarks as revealed by X-ray structures Computational Studies of Rna and Dna. 235-257. DOI: 10.1007/978-1-4020-4851-3_9  0.63
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