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Nozomi Ando, Ph.D. - Publications

Affiliations: 
2014-2018 Princeton University, Princeton, NJ 
 2018- Cornell University, Ithaca, NY, United States 
Area:
x-ray, synchrotron radiation, enzymes
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

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Year Citation  Score
2021 Meisburger SP, Xu D, Ando N. : a general method to deconvolve X-ray scattering data from evolving mixtures. Iucrj. 8: 225-237. PMID 33708400 DOI: 10.1107/S2052252521000555  1
2021 Ando N, Barquera B, Bartlett DH, Boyd E, Burnim AA, Byer AS, Colman D, Gillilan RE, Gruebele M, Makhatadze G, Royer CA, Shock E, Wand AJ, Watkins MB. The Molecular Basis for Life in Extreme Environments. Annual Review of Biophysics. PMID 33637008 DOI: 10.1146/annurev-biophys-100120-072804  1
2020 Corless EI, Saad Imran SM, Watkins MB, Bacik JP, Mattice J, Patterson A, Danyal K, Soffe M, Kitelinger R, Seefeldt LC, Origanti SS, Bennett B, Bothner B, Ando N, Antony E. The flexible N-terminus of BchL autoinhibits activity through interaction with its [4Fe-4S] cluster and relieved upon ATP binding. The Journal of Biological Chemistry. 100107. PMID 33434584 DOI: 10.1074/jbc.RA120.016278  1
2020 Corless EI, Saad Imran SM, Watkins MB, Bacik JP, Mattice J, Patterson A, Danyal K, Soffe M, Kitelinger R, Seefeldt LC, Origanti SS, Bennett B, Bothner B, Ando N, Antony E. The flexible N-terminus of BchL autoinhibits activity through interaction with its [4Fe-4S] cluster and relieved upon ATP binding. The Journal of Biological Chemistry. PMID 33219127 DOI: 10.1074/jbc.RA120.016278  1
2020 Meisburger SP, Case DA, Ando N. Diffuse X-ray scattering from correlated motions in a protein crystal. Nature Communications. 11: 1271. PMID 32152274 DOI: 10.1038/s41467-020-14933-6  1
2019 Thomas WC, Brooks FP, Burnim AA, Bacik JP, Stubbe J, Kaelber JT, Chen JZ, Ando N. Convergent allostery in ribonucleotide reductase. Nature Communications. 10: 2653. PMID 31201319 DOI: 10.1038/s41467-019-10568-4  1
2019 Tinoco A, Wei Y, Bacik JP, Carminati DM, Moore EJ, Ando N, Zhang Y, Fasan R. Origin of high stereocontrol in olefin cyclopropanation catalyzed by an engineered carbene transferase. Acs Catalysis. 9: 1514-1524. PMID 31134138 DOI: 10.1021/acscatal.8b04073  1
2019 Khan CA, Meisburger SP, Ando N, Fitzpatrick PF. The phenylketonuria-associated substitution R68S converts phenylalanine hydroxylase to a constitutively active enzyme but reduces its stability. The Journal of Biological Chemistry. PMID 30674554 DOI: 10.1074/jbc.RA118.006477  1
2018 Parker MJ, Maggiolo AO, Thomas WC, Kim A, Meisburger SP, Ando N, Boal AK, Stubbe J. An endogenous dAMP ligand in class Ib RNR promotes assembly of a noncanonical dimer for regulation by dATP. Proceedings of the National Academy of Sciences of the United States of America. PMID 29712847 DOI: 10.1073/pnas.1800356115  1
2017 Shoemaker S, Ando N. X-rays in the Cryo-EM Era: Structural Biology's Dynamic Future. Biochemistry. PMID 29227642 DOI: 10.1021/acs.biochem.7b01031  1
2017 Meisburger SP, Ando N. Correlated Motions from Crystallography beyond Diffraction. Accounts of Chemical Research. 50: 580-583. PMID 28945428 DOI: 10.1021/acs.accounts.6b00562  1
2017 Davis KM, Schramma KR, Hansen WA, Bacik JP, Khare SD, Seyedsayamdost MR, Ando N. Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition. Proceedings of the National Academy of Sciences of the United States of America. PMID 28893989 DOI: 10.1073/pnas.1703663114  1
2017 Meisburger SP, Thomas WC, Watkins MB, Ando N. X-ray Scattering Studies of Protein Structural Dynamics. Chemical Reviews. PMID 28558231 DOI: 10.1021/acs.chemrev.6b00790  1
2016 Rustiguel JK, Soares RO, Meisburger SP, Davis KM, Malzbender KL, Ando N, Dias-Baruffi M, Nonato MC. Full-length model of the human galectin-4 and insights into dynamics of inter-domain communication. Scientific Reports. 6: 33633. PMID 27642006 DOI: 10.1038/srep33633  1
2016 Meisburger SP, Taylor AB, Khan CA, Zhang S, Fitzpatrick PF, Ando N. Domain movements upon activation of phenylalanine hydroxylase characterized by crystallography and chromatography-coupled small-angle X-ray scattering. Journal of the American Chemical Society. PMID 27145334 DOI: 10.1021/jacs.6b01563  1
2016 Ando N, Li H, Brignole EJ, Thompson S, McLaughlin MI, Page JE, Asturias FJ, Stubbe J, Drennan CL. Allosteric Inhibition of Human Ribonucleotide Reductase by dATP Entails the Stabilization of a Hexamer. Biochemistry. PMID 26727048 DOI: 10.1021/acs.biochem.5b01207  1
2014 Skou S, Gillilan RE, Ando N. Synchrotron-based small-angle X-ray scattering of proteins in solution. Nature Protocols. 9: 1727-39. PMID 24967622 DOI: 10.1038/nprot.2014.116  1
2013 Minnihan EC, Ando N, Brignole EJ, Olshansky L, Chittuluru J, Asturias FJ, Drennan CL, Nocera DG, Stubbe J. Generation of a stable, aminotyrosyl radical-induced α2β2 complex of Escherichia coli class Ia ribonucleotide reductase. Proceedings of the National Academy of Sciences of the United States of America. 110: 3835-40. PMID 23431160 DOI: 10.1073/pnas.1220691110  1
2012 Bewley KD, Firer-Sherwood MA, Mock JY, Ando N, Drennan CL, Elliott SJ. Mind the gap: diversity and reactivity relationships among multihaem cytochromes of the MtrA/DmsE family. Biochemical Society Transactions. 40: 1268-73. PMID 23176466 DOI: 10.1042/BST20120106  1
2012 Ando N, Kung Y, Can M, Bender G, Ragsdale SW, Drennan CL. Transient B12-dependent methyltransferase complexes revealed by small-angle X-ray scattering. Journal of the American Chemical Society. 134: 17945-54. PMID 23051056 DOI: 10.1021/ja3055782  1
2012 Zimanyi CM, Ando N, Brignole EJ, Asturias FJ, Stubbe J, Drennan CL. Tangled up in knots: structures of inactivated forms of E. coli class Ia ribonucleotide reductase. Structure (London, England : 1993). 20: 1374-83. PMID 22727814 DOI: 10.1016/j.str.2012.05.009  1
2012 Wang S, Meng YF, Ando N, Tate M, Krasnicki S, Yan CS, Liang Q, Lai J, Mao HK, Gruner SM, Hemley RJ. Single-crystal CVD diamonds as small-angle X-ray scattering windows for high-pressure research. Journal of Applied Crystallography. 45: 453-457. PMID 22675230 DOI: 10.1107/S0021889812010722  1
2012 Brignole EJ, Ando N, Zimanyi CM, Drennan CL. The prototypic class Ia ribonucleotide reductase from Escherichia coli: still surprising after all these years. Biochemical Society Transactions. 40: 523-30. PMID 22616862 DOI: 10.1042/BST20120081  1
2012 Kung Y, Ando N, Doukov TI, Blasiak LC, Bender G, Seravalli J, Ragsdale SW, Drennan CL. Visualizing molecular juggling within a B12-dependent methyltransferase complex. Nature. 484: 265-9. PMID 22419154 DOI: 10.1038/nature10916  1
2011 Ando N, Brignole EJ, Zimanyi CM, Funk MA, Yokoyama K, Asturias FJ, Stubbe J, Drennan CL. Structural interconversions modulate activity of Escherichia coli ribonucleotide reductase. Proceedings of the National Academy of Sciences of the United States of America. 108: 21046-51. PMID 22160671 DOI: 10.1073/pnas.1112715108  1
2011 Firer-Sherwood MA, Ando N, Drennan CL, Elliott SJ. Solution-based structural analysis of the decaheme cytochrome, MtrA, by small-angle X-ray scattering and analytical ultracentrifugation. The Journal of Physical Chemistry. B. 115: 11208-14. PMID 21838277 DOI: 10.1021/jp203603r  1
2009 Barstow B, Ando N, Kim CU, Gruner SM. Coupling of pressure-induced structural shifts to spectral changes in a yellow fluorescent protein. Biophysical Journal. 97: 1719-27. PMID 19751677 DOI: 10.1016/j.bpj.2009.06.039  1
2008 Ando N, Barstow B, Baase WA, Fields A, Matthews BW, Gruner SM. Structural and thermodynamic characterization of T4 lysozyme mutants and the contribution of internal cavities to pressure denaturation. Biochemistry. 47: 11097-109. PMID 18816066 DOI: 10.1021/bi801287m  1
2008 Barstow B, Ando N, Kim CU, Gruner SM. Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proceedings of the National Academy of Sciences of the United States of America. 105: 13362-6. PMID 18768811 DOI: 10.1073/pnas.0802252105  1
2008 Ando N, Chenevier P, Novak M, Tate MW, Gruner SM. High hydrostatic pressure small-angle X-ray scattering cell for protein solution studies featuring diamond windows and disposable sample cells Journal of Applied Crystallography. 41: 167-175. DOI: 10.1107/S0021889807056944  1
2006 Batra A, Cohen C, Kim H, Winey KI, Ando N, Gruner SM. Counterion effect on the rheology and morphology of tailored poly(dimethylsiloxane) ionomers Macromolecules. 39: 1630-1638. DOI: 10.1021/ma052275a  1
2005 Polozova A, Li X, Shangguan T, Meers P, Schuette DR, Ando N, Gruner SM, Perkins WR. Formation of homogeneous unilamellar liposomes from an interdigitated matrix. Biochimica Et Biophysica Acta. 1668: 117-25. PMID 15670737 DOI: 10.1016/j.bbamem.2004.11.012  1
2004 Ito K, Chuang J, Alvarez-Lorenzo C, Watanabe T, Ando N, Grosberg AY. Multiple-contact adsorption of target molecules by heteropolymer gels Macromolecular Symposia. 207: 1-16. DOI: 10.1002/masy.200450301  1
2003 Ito K, Chuang J, Alvarez-Lorenzo C, Watanabe T, Ando N, Grosberg AY. Multiple point adsorption in a heteropolymer gel and the Tanaka approach to imprinting: Experiment and theory Progress in Polymer Science (Oxford). 28: 1489-1515. DOI: 10.1016/j.progpolymsci.2003.07.001  1
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