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Barry M. Zee, Ph.D. - Publications

Affiliations: 
2013 Molecular Biology Princeton University, Princeton, NJ 
Area:
Epigenetics
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Alekseyenko AA, Zee BM, Dhoondia Z, Kang H, Makofske JL, Kuroda MI. Cell state-dependent chromatin targeting in NUT carcinoma. Biorxiv : the Preprint Server For Biology. PMID 37131839 DOI: 10.1101/2023.04.18.537367  0.327
2023 Alekseyenko AA, Zee BM, Dhoondia Z, Kang H, Makofske JL, Kuroda MI. Cell state-dependent chromatin targeting in NUT carcinoma. Genetics. PMID 37119804 DOI: 10.1093/genetics/iyad083  0.325
2021 Zee BM, Poels KE, Yao CH, Kawabata KC, Wu G, Duy C, Jacobus WD, Senior E, Endress JE, Jambhekar A, Lovitch SB, Ma J, Dhall A, Harris IS, Blanco MA, et al. Combined epigenetic and metabolic treatments overcome differentiation blockade in acute myeloid leukemia. Iscience. 24: 102651. PMID 34151238 DOI: 10.1016/j.isci.2021.102651  0.776
2019 Anastas JN, Zee BM, Kalin JH, Kim M, Guo R, Alexandrescu S, Blanco MA, Giera S, Gillespie SM, Das J, Wu M, Nocco S, Bonal DM, Nguyen QD, Suva ML, et al. Re-programing Chromatin with a Bifunctional LSD1/HDAC Inhibitor Induces Therapeutic Differentiation in DIPG. Cancer Cell. PMID 31631026 DOI: 10.1016/J.Ccell.2019.09.005  0.827
2019 Dhall A, Zee BM, Yan F, Blanco MA. Intersection of Epigenetic and Metabolic Regulation of Histone Modifications in Acute Myeloid Leukemia. Frontiers in Oncology. 9: 432. PMID 31192132 DOI: 10.3389/Fonc.2019.00432  0.82
2017 Kang H, Jung YL, McElroy KA, Zee BM, Wallace HA, Woolnough JL, Park PJ, Kuroda MI. Bivalent complexes of PRC1 with orthologs of BRD4 and MOZ/MORF target developmental genes in Drosophila. Genes & Development. PMID 29070704 DOI: 10.1101/Gad.305987.117  0.469
2017 Alekseyenko AA, Walsh EM, Zee BM, Pakozdi T, Hsi P, Lemieux ME, Dal Cin P, Ince TA, Kharchenko PV, Kuroda MI, French CA. Ectopic protein interactions within BRD4-chromatin complexes drive oncogenic megadomain formation in NUT midline carcinoma. Proceedings of the National Academy of Sciences of the United States of America. PMID 28484033 DOI: 10.1073/Pnas.1702086114  0.449
2017 McElroy KA, Jung YL, Zee BM, Wang CI, Park PJ, Kuroda MI. upSET, the Drosophila Homologue of SET3, Is Required for Viability and the Proper Balance of Active and Repressive Chromatin Marks. G3 (Bethesda, Md.). PMID 28064188 DOI: 10.1534/G3.116.037788  0.568
2016 Zee BM, Dibona AB, Alekseyenko AA, French CA, Kuroda MI. The Oncoprotein BRD4-NUT Generates Aberrant Histone Modification Patterns. Plos One. 11: e0163820. PMID 27698495 DOI: 10.1371/Journal.Pone.0163820  0.639
2016 Zee BM, Alekseyenko AA, McElroy KA, Kuroda MI. Streamlined discovery of cross-linked chromatin complexes and associated histone modifications by mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. PMID 26831069 DOI: 10.1073/Pnas.1522750113  0.652
2015 Kang H, McElroy KA, Jung YL, Alekseyenko AA, Zee BM, Park PJ, Kuroda MI. Sex comb on midleg (Scm) is a functional link between PcG-repressive complexes in Drosophila. Genes & Development. 29: 1136-50. PMID 26063573 DOI: 10.1101/Gad.260562.115  0.445
2015 Won KJ, Choi I, LeRoy G, Zee BM, Sidoli S, Gonzales-Cope M, Garcia BA. Proteogenomics analysis reveals specific genomic orientations of distal regulatory regions composed by non-canonical histone variants. Epigenetics & Chromatin. 8: 13. PMID 25878728 DOI: 10.1186/S13072-015-0005-9  0.861
2015 Alekseyenko AA, McElroy KA, Kang H, Zee BM, Kharchenko PV, Kuroda MI. BioTAP-XL: Cross-linking/Tandem Affinity Purification to Study DNA Targets, RNA, and Protein Components of Chromatin-Associated Complexes. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 109: 21.30.1-21.30.32. PMID 25559106 DOI: 10.1002/0471142727.Mb2130S109  0.455
2014 Karch KR, Zee BM, Garcia BA. High resolution is not a strict requirement for characterization and quantification of histone post-translational modifications. Journal of Proteome Research. 13: 6152-9. PMID 25325711 DOI: 10.1021/Pr500902F  0.81
2014 Mews P, Zee BM, Liu S, Donahue G, Garcia BA, Berger SL. Histone methylation has dynamics distinct from those of histone acetylation in cell cycle reentry from quiescence. Molecular and Cellular Biology. 34: 3968-80. PMID 25154414 DOI: 10.1128/Mcb.00763-14  0.767
2014 Alekseyenko AA, Gorchakov AA, Zee BM, Fuchs SM, Kharchenko PV, Kuroda MI. Heterochromatin-associated interactions of Drosophila HP1a with dADD1, HIPP1, and repetitive RNAs. Genes & Development. 28: 1445-60. PMID 24990964 DOI: 10.1101/Gad.241950.114  0.44
2014 Smadbeck J, Peterson MB, Zee BM, Garapaty S, Mago A, Lee C, Giannis A, Trojer P, Garcia BA, Floudas CA. De novo peptide design and experimental validation of histone methyltransferase inhibitors. Plos One. 9: e95535. PMID 24740276 DOI: 10.1371/journal.pone.0095535  0.487
2014 Smadbeck J, Peterson MB, Zee BM, Garapaty S, Mago A, Lee C, Giannis A, Trojer P, Garcia BA, Floudas CA. De novo peptide design and experimental validation of histone methyltransferase inhibitors. Plos One. 9: e90095. PMID 24587223 DOI: 10.1371/Journal.Pone.0090095  0.551
2013 Leroy G, Dimaggio PA, Chan EY, Zee BM, Blanco MA, Bryant B, Flaniken IZ, Liu S, Kang Y, Trojer P, Garcia BA. A quantitative atlas of histone modification signatures from human cancer cells. Epigenetics & Chromatin. 6: 20. PMID 23826629 DOI: 10.1186/1756-8935-6-20  0.839
2013 Stadler SC, Vincent CT, Fedorov VD, Patsialou A, Cherrington BD, Wakshlag JJ, Mohanan S, Zee BM, Zhang X, Garcia BA, Condeelis JS, Brown AM, Coonrod SA, Allis CD. Dysregulation of PAD4-mediated citrullination of nuclear GSK3β activates TGF-β signaling and induces epithelial-to-mesenchymal transition in breast cancer cells. Proceedings of the National Academy of Sciences of the United States of America. 110: 11851-6. PMID 23818587 DOI: 10.1073/Pnas.1308362110  0.598
2013 Evertts AG, Zee BM, Dimaggio PA, Gonzales-Cope M, Coller HA, Garcia BA. Quantitative dynamics of the link between cellular metabolism and histone acetylation. The Journal of Biological Chemistry. 288: 12142-51. PMID 23482559 DOI: 10.1074/Jbc.M112.428318  0.836
2013 Cao XJ, Zee BM, Garcia BA. Heavy methyl-SILAC labeling coupled with liquid chromatography and high-resolution mass spectrometry to study the dynamics of site-specific histone methylation. Methods in Molecular Biology (Clifton, N.J.). 977: 299-313. PMID 23436372 DOI: 10.1007/978-1-62703-284-1_24  0.852
2013 Zee BM, Garcia BA. Validation of protein acetylation by mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 981: 1-11. PMID 23381849 DOI: 10.1007/978-1-62703-305-3_1  0.658
2012 Voigt P, LeRoy G, Drury WJ, Zee BM, Son J, Beck DB, Young NL, Garcia BA, Reinberg D. Asymmetrically modified nucleosomes. Cell. 151: 181-93. PMID 23021224 DOI: 10.1016/J.Cell.2012.09.002  0.86
2012 LeRoy G, Chepelev I, DiMaggio PA, Blanco MA, Zee BM, Zhao K, Garcia BA. Proteo-Genomic characterization and mapping of nucleosomes decoded by Brd and HP1 proteins Genome Biology. R68. PMID 22897906 DOI: 10.1186/Gb-2012-13-8-R68  0.855
2012 Zee BM, Garcia BA. Discovery of lysine post-translational modifications through mass spectrometric detection. Essays in Biochemistry. 52: 147-63. PMID 22708569 DOI: 10.1042/Bse0520147  0.635
2012 Blanco MA, LeRoy G, Khan Z, Alečković M, Zee BM, Garcia BA, Kang Y. Global secretome analysis identifies novel mediators of bone metastasis. Cell Research. 22: 1339-55. PMID 22688892 DOI: 10.1038/Cr.2012.89  0.677
2012 Zee BM, Britton LM, Wolle D, Haberman DM, Garcia BA. Origins and formation of histone methylation across the human cell cycle. Molecular and Cellular Biology. 32: 2503-14. PMID 22547680 DOI: 10.1128/Mcb.06673-11  0.845
2011 Kuo AJ, Cheung P, Chen K, Zee BM, Kioi M, Lauring J, Xi Y, Park BH, Shi X, Garcia BA, Li W, Gozani O. NSD2 links dimethylation of histone H3 at lysine 36 to oncogenic programming. Molecular Cell. 44: 609-20. PMID 22099308 DOI: 10.1016/J.Molcel.2011.08.042  0.686
2011 Britton LM, Gonzales-Cope M, Zee BM, Garcia BA. Breaking the histone code with quantitative mass spectrometry. Expert Review of Proteomics. 8: 631-43. PMID 21999833 DOI: 10.1586/Epr.11.47  0.843
2011 Zee BM, Young NL, Garcia BA. Quantitative proteomic approaches to studying histone modifications. Current Chemical Genomics. 5: 106-14. PMID 21966350 DOI: 10.2174/1875397301005010106  0.813
2011 Torrente MP, Zee BM, Young NL, Baliban RC, LeRoy G, Floudas CA, Hake SB, Garcia BA. Proteomic interrogation of human chromatin. Plos One. 6: e24747. PMID 21935452 DOI: 10.1371/Journal.Pone.0024747  0.846
2011 Wu L, Zee BM, Wang Y, Garcia BA, Dou Y. The RING finger protein MSL2 in the MOF complex is an E3 ubiquitin ligase for H2B K34 and is involved in crosstalk with H3 K4 and K79 methylation. Molecular Cell. 43: 132-44. PMID 21726816 DOI: 10.1016/J.Molcel.2011.05.015  0.634
2011 Hergeth SP, Dundr M, Tropberger P, Zee BM, Garcia BA, Daujat S, Schneider R. Isoform-specific phosphorylation of human linker histone H1.4 in mitosis by the kinase Aurora B. Journal of Cell Science. 124: 1623-8. PMID 21511733 DOI: 10.1242/Jcs.084947  0.657
2011 Levy D, Kuo AJ, Chang Y, Schaefer U, Kitson C, Cheung P, Espejo A, Zee BM, Liu CL, Tangsombatvisit S, Tennen RI, Kuo AY, Tanjing S, Cheung R, Chua KF, et al. Lysine methylation of the NF-κB subunit RelA by SETD6 couples activity of the histone methyltransferase GLP at chromatin to tonic repression of NF-κB signaling. Nature Immunology. 12: 29-36. PMID 21131967 DOI: 10.1038/Ni.1968  0.703
2010 Zee BM, Levin RS, Dimaggio PA, Garcia BA. Global turnover of histone post-translational modifications and variants in human cells. Epigenetics & Chromatin. 3: 22. PMID 21134274 DOI: 10.1186/1756-8935-3-22  0.855
2010 Weiss T, Hergeth S, Zeissler U, Izzo A, Tropberger P, Zee BM, Dundr M, Garcia BA, Daujat S, Schneider R. Histone H1 variant-specific lysine methylation by G9a/KMT1C and Glp1/KMT1D. Epigenetics & Chromatin. 3: 7. PMID 20334638 DOI: 10.1186/1756-8935-3-7  0.626
2010 Evertts AG, Zee BM, Garcia BA. Modern approaches for investigating epigenetic signaling pathways. Journal of Applied Physiology (Bethesda, Md. : 1985). 109: 927-33. PMID 20110548 DOI: 10.1152/Japplphysiol.00007.2010  0.834
2010 Zee BM, Levin RS, Xu B, LeRoy G, Wingreen NS, Garcia BA. In vivo residue-specific histone methylation dynamics. The Journal of Biological Chemistry. 285: 3341-50. PMID 19940157 DOI: 10.1074/Jbc.M109.063784  0.814
2010 Zee BM, Garcia BA. Electron transfer dissociation facilitates sequencing of adenosine diphosphate-ribosylated peptides. Analytical Chemistry. 82: 28-31. PMID 19928949 DOI: 10.1021/Ac902134Y  0.506
2009 Plazas-Mayorca MD, Zee BM, Young NL, Fingerman IM, LeRoy G, Briggs SD, Garcia BA. One-pot shotgun quantitative mass spectrometry characterization of histones. Journal of Proteome Research. 8: 5367-74. PMID 19764812 DOI: 10.1021/Pr900777E  0.813
2009 LeRoy G, Weston JT, Zee BM, Young NL, Plazas-Mayorca MD, Garcia BA. Heterochromatin protein 1 is extensively decorated with histone code-like post-translational modifications. Molecular & Cellular Proteomics : McP. 8: 2432-42. PMID 19567367 DOI: 10.1074/Mcp.M900160-Mcp200  0.823
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