Cherif Matta, Ph.D. - Publications

Affiliations: 
2002 McMaster University, Hamilton, ON, Canada 
Area:
Theoretical Investigations of Molecular Structure and Reactivity

72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Jara-Cortés J, Matta CF, Hernández-Trujillo J. A fast approximate extension of the interacting quantum atoms energy decomposition to excited states. Journal of Computational Chemistry. 43: 1068-1078. PMID 35470908 DOI: 10.1002/jcc.26863  0.395
2020 Sowlati-Hashjin S, Karttunen M, Matta CF. Manipulation of Diatomic Molecules with Oriented External Electric Fields: Linear Correlations in Atomic Properties Lead to Non-Linear Molecular Responses. The Journal of Physical Chemistry. A. PMID 32337997 DOI: 10.1021/acs.jpca.0c02569  0.477
2020 Matta CF, Lombardi O, Jaimes Arriaga J. Two-step emergence: the quantum theory of atoms in molecules as a bridge between quantum mechanics and molecular chemistry Foundations of Chemistry. 22: 107-129. DOI: 10.1007/s10698-020-09352-w  0.35
2019 Massa L, Keith T, Cheng Y, Matta CF. The kernel energy method applied to quantum theory of atoms in molecules – energies of interacting quantum atoms Chemical Physics Letters. 734: 136650. DOI: 10.1016/J.CPLETT.2019.136650  0.38
2018 Braden DA, Matta CF. On the Unusual Synclinal Conformations of Hexafluorobutadiene and Structurally Similar Molecules. The Journal of Physical Chemistry. A. 122: 4538-4548. PMID 29694045 DOI: 10.1021/acs.jpca.8b02157  0.463
2018 Gatti C, Macetti G, Boyd RJ, Matta CF. An electron density source-function study of DNA base pairs in their neutral and ionized ground states. Journal of Computational Chemistry. PMID 29681131 DOI: 10.1002/Jcc.25222  0.731
2017 Matta CF. On the connections between the quantum theory of atoms in molecules (QTAIM) and density functional theory (DFT): a letter from Richard F. W. Bader to Lou Massa Structural Chemistry. 28: 1591-1597. DOI: 10.1007/s11224-017-0946-7  0.331
2016 Arabi AA, Matta CF. Electrostatic potentials and average electron densities of bioisosteres in methylsquarate and acetic acid. Future Medicinal Chemistry. 8: 361-71. PMID 26976657 DOI: 10.4155/fmc.16.2  0.439
2016 Terrabuio LA, Teodoro TQ, Matta CF, Haiduke RL. Nonnuclear Attractors in Heteronuclear Diatomic Systems. The Journal of Physical Chemistry. A. 120: 1168-74. PMID 26842391 DOI: 10.1021/acs.jpca.5b10888  0.412
2016 Matta CF, Sadjadi S, Braden DA, Frenking G. The barrier to the methyl rotation in Cis-2-butene and its isomerization energy to Trans-2-butene, revisited. Journal of Computational Chemistry. 37: 143-54. PMID 26581645 DOI: 10.1002/Jcc.24223  0.399
2016 Terrabuio LA, Haiduke RLA, Matta CF. Difluorodiazirine (CF2N2): A comparative quantum mechanical study of the first triplet and first singlet excited states Chemical Physics Letters. 655: 96-102. DOI: 10.1016/j.cplett.2016.05.032  0.328
2016 Rodríguez JI, Matta CF, Uribe EA, Götz AW, Castillo-Alvarado FL, Molina-Brito B. A QTAIM topological analysis of the P3HT-PCBM dimer Chemical Physics Letters. 644: 55-66. DOI: 10.1016/j.cplett.2015.11.052  0.4
2015 Lecomte C, Espinosa E, Matta CF. On atom-atom 'short contact' bonding interactions in crystals. Iucrj. 2: 161-3. PMID 25866651 DOI: 10.1107/S2052252515002067  0.42
2015 Sumar I, Cook R, Ayers PW, Matta CF. Aromaticity of rings-in-molecules (RIMs) from electron localization-delocalization matrices (LDMs) Physica Scripta. 91. DOI: 10.1088/0031-8949/91/1/013001  0.418
2015 Sumar I, Cook R, Ayers PW, Matta CF. AIMLDM: A program to generate and analyze electron localization-delocalization matrices (LDMs) Computational and Theoretical Chemistry. 1070: 55-67. DOI: 10.1016/J.Comptc.2015.07.014  0.426
2015 Huang L, Matta C, Massa L. The kernel energy method (KEM) delivers fast and accurate QTAIM electrostatic charge for atoms in large molecules Structural Chemistry. DOI: 10.1007/S11224-015-0661-1  0.533
2014 Timm MJ, Matta CF, Massa L, Huang L. The localization-delocalization matrix and the electron-density-weighted connectivity matrix of a finite graphene nanoribbon reconstructed from kernel fragments. The Journal of Physical Chemistry. A. 118: 11304-16. PMID 25343715 DOI: 10.1021/jp508490p  0.455
2014 Timm MJ, Matta CF. Primary retention following nuclear recoil in β-decay: Proposed synthesis of a metastable rare gas oxide ((38)ArO4) from ((38)ClO4(-)) and the evolution of chemical bonding over the nuclear transmutation reaction path. Applied Radiation and Isotopes : Including Data, Instrumentation and Methods For Use in Agriculture, Industry and Medicine. 94: 206-215. PMID 25222874 DOI: 10.1016/j.apradiso.2014.07.011  0.361
2014 Matta CF. Modeling biophysical and biological properties from the characteristics of the molecular electron density, electron localization and delocalization matrices, and the electrostatic potential. Journal of Computational Chemistry. 35: 1165-98. PMID 24777743 DOI: 10.1002/jcc.23608  0.434
2014 Massa L, Huang L, Matta C. Drug target interaction by KEM of Quantum Crystallography Acta Crystallographica Section a Foundations and Advances. 70: C967-C967. DOI: 10.1107/S2053273314090329  0.379
2013 Sowlati-Hashjin S, Matta C. The chemical bond in external electric fields: energies, geometries, and vibrational Stark shifts of diatomic molecules. The Journal of Chemical Physics. 139: 144101. PMID 24116597 DOI: 10.1063/1.4820487  0.325
2013 Matta CF, Sowlati-Hashjin S, Bandrauk AD. Dipole moment surfaces of the CH4 + •X → CH3• + HX (X = F, Cl) reactions from atomic dipole moment surfaces, and the origins of the sharp extrema of the dipole moments near the transition states. The Journal of Physical Chemistry. A. 117: 7468-83. PMID 23627291 DOI: 10.1021/Jp401555H  0.494
2013 Sadjadi S, Matta CF, Hamilton IP. Chemical bonding in groups 10, 11, and 12 transition metal homodimers-An electron density study Canadian Journal of Chemistry. 91: 583-590. DOI: 10.1139/cjc-2012-0549  0.409
2013 Matta CF, Sowlati-Hashjin S, Bandrauk AD. Dipole moment surfaces of the CH4 + •x → CH3 • + HX (X = F, Cl) reactions from atomic dipole moment surfaces, and the origins of the sharp extrema of the dipole moments near the transition states Journal of Physical Chemistry A. 117: 7468-7483. DOI: 10.1021/jp401555h  0.428
2013 Matta CF. Special issue: Philosophical aspects and implications of the quantum theory of atoms in molecules (QTAIM) Foundations of Chemistry. 15: 245-251. DOI: 10.1007/s10698-013-9194-0  0.374
2013 Bader RFW, Matta CF. Atoms in molecules as non-overlapping, bounded, space-filling open quantum systems Foundations of Chemistry. 15: 253-276. DOI: 10.1007/S10698-012-9153-1  0.393
2011 Bohórquez HJ, Boyd RJ, Matta CF. Molecular model with quantum mechanical bonding information. The Journal of Physical Chemistry. A. 115: 12991-7. PMID 21894893 DOI: 10.1021/Jp204100Z  0.746
2011 Huang L, Matta CF, Massa L. Ion induced dipole clusters H(n)- (3 ≤ n-odd ≤ 13): density functional theory calculations of structure and energy. The Journal of Physical Chemistry. A. 115: 12445-50. PMID 21786781 DOI: 10.1021/jp203913n  0.305
2011 Matta CF, Huang L, Massa L. Characterization of a trihydrogen bond on the basis of the topology of the electron density. The Journal of Physical Chemistry. A. 115: 12451-8. PMID 21714560 DOI: 10.1021/jp203973d  0.315
2011 Matta CF, Arabi AA. Electron-density descriptors as predictors in quantitative structure--activity/property relationships and drug design. Future Medicinal Chemistry. 3: 969-94. PMID 21707400 DOI: 10.4155/fmc.11.65  0.484
2011 Matta CF, Sichinga M, Ayers PW. Information theoretic properties from the quantum theory of atoms in molecules Chemical Physics Letters. 514: 379-383. DOI: 10.1016/J.Cplett.2011.08.072  0.42
2011 Cukrowski I, Matta CF. Protonation sequence of linear aliphatic polyamines from intramolecular atomic energies and charges Computational and Theoretical Chemistry. 966: 213-219. DOI: 10.1016/j.comptc.2011.03.003  0.334
2011 Huang L, Bohorquez HJ, Matta CF, Massa L. The Kernel energy method: Application to graphene and extended aromatics International Journal of Quantum Chemistry. 111: 4150-4157. DOI: 10.1002/Qua.22975  0.731
2010 Walker VE, Castillo N, Matta CF, Boyd RJ. The effect of multiplicity on the size of iron(II) and the structure of iron(II) porphyrins. The Journal of Physical Chemistry. A. 114: 10315-9. PMID 20722364 DOI: 10.1021/Jp105842K  0.634
2010 Matta CF, Arabi AA, Weaver DF. The bioisosteric similarity of the tetrazole and carboxylate anions: clues from the topologies of the electrostatic potential and of the electron density. European Journal of Medicinal Chemistry. 45: 1868-72. PMID 20133027 DOI: 10.1016/J.Ejmech.2010.01.025  0.336
2010 Matta CF. How dependent are molecular and atomic properties on the electronic structure method? Comparison of Hartree-Fock, DFT, and MP2 on a biologically relevant set of molecules. Journal of Computational Chemistry. 31: 1297-311. PMID 19882732 DOI: 10.1002/jcc.21417  0.427
2010 Cukrowski I, Matta CF. Hydrogen-hydrogen bonding: A stabilizing interaction in strained chelating rings of metal complexes in aqueous phase Chemical Physics Letters. 499: 66-69. DOI: 10.1016/j.cplett.2010.09.013  0.327
2010 Bohórquez HJ, Matta CF, Boyd RJ. The localized electrons detector as an ab initio representation of molecular structures International Journal of Quantum Chemistry. 110: 2418-2425. DOI: 10.1002/Qua.22662  0.728
2010 Bohórquez HJ, Cárdenas C, Matta CF, Boyd RJ, Patarroyo ME. Methods in Biocomputational Chemistry: A Lesson from the Amino Acids Quantum Biochemistry. 403-421. DOI: 10.1002/9783527629213.ch13  0.521
2009 Arabi AA, Matta CF. Where is electronic energy stored in adenosine triphosphate? The Journal of Physical Chemistry. A. 113: 3360-8. PMID 19281210 DOI: 10.1021/jp811085c  0.341
2007 Taylor A, Matta CF, Boyd RJ. The Hydrated Electron as a Pseudo-Atom in Cavity-Bound Water Clusters. Journal of Chemical Theory and Computation. 3: 1054-63. PMID 26627424 DOI: 10.1021/ct600334w  0.694
2007 Matta CF, Arabi AA, Keith TA. Atomic partitioning of the dissociation energy of the P-O(H) bond in hydrogen phosphate anion (HPO4(2-)): disentangling the effect of Mg2+. The Journal of Physical Chemistry. A. 111: 8864-72. PMID 17713891 DOI: 10.1021/jp0735280  0.44
2007 Wolstenholme DJ, Matta CF, Cameron TS. Experimental and theoretical electron density study of a highly twisted polycyclic aromatic hydrocarbon: 4-methyl-[4]helicene. The Journal of Physical Chemistry. A. 111: 8803-13. PMID 17705352 DOI: 10.1021/jp071002+  0.4
2007 Taylor A, Matta CF, Boyd RJ. The hydrated electron as a pseudo-atom in cavity-bound water clusters Journal of Chemical Theory and Computation. 3: 1054-1063. DOI: 10.1021/ct600334w  0.624
2007 Matta CF, Boyd RJ. An Introduction to the Quantum Theory of Atoms in Molecules The Quantum Theory of Atoms in Molecules: From Solid State to Dna and Drug Design. 1-34. DOI: 10.1002/9783527610709.ch1  0.673
2007 Matta CF, Boyd RJ. Preface The Quantum Theory of Atoms in Molecules: From Solid State to Dna and Drug Design. xix-xxv. DOI: 10.1002/9783527610709  0.502
2006 Matta CF, Castillo N, Boyd RJ. Atomic contributions to bond dissociation energies in aliphatic hydrocarbons. The Journal of Chemical Physics. 125: 204103. PMID 17144686 DOI: 10.1063/1.2378720  0.696
2006 Zhurova EA, Matta CF, Wu N, Zhurov VV, Pinkerton AA. Experimental and theoretical electron density study of estrone. Journal of the American Chemical Society. 128: 8849-61. PMID 16819879 DOI: 10.1021/ja061080v  0.453
2006 Matta CF, Bader RF. An experimentalist's reply to "What is an atom in a molecule?". The Journal of Physical Chemistry. A. 110: 6365-71. PMID 16686473 DOI: 10.1021/Jp060761+  0.737
2006 Matta CF, Castillo N, Boyd RJ. Extended weak bonding interactions in DNA: pi-stacking (base-base), base-backbone, and backbone-backbone interactions. The Journal of Physical Chemistry. B. 110: 563-78. PMID 16471569 DOI: 10.1021/Jp054986G  0.708
2006 Bandrauk AD, Sedik EWS, Matta CF. Laser control of reaction paths in ion-molecule reactions Molecular Physics. 104: 95-102. DOI: 10.1080/00268970500273983  0.385
2006 Matta CF, Bader RFW. An experimentalist's reply to "what is an atom in a molecule?" Journal of Physical Chemistry A. 110: 6365-6371. DOI: 10.1021/jp060761  0.346
2006 Matta CF. Hydrogen-hydrogen bonding: The non-electrostatic limit of closed-shell interaction between two hydro Hydrogen Bonding - New Insights. 337-375. DOI: 10.1007/978-1-4020-4853-1_9  0.381
2005 Matta CF, Castillo N, Boyd RJ. Characterization of a closed-shell fluorine-fluorine bonding interaction in aromatic compounds on the basis of the electron density. The Journal of Physical Chemistry. A. 109: 3669-81. PMID 16839033 DOI: 10.1021/Jp045044Z  0.686
2005 Castillo N, Matta CF, Boyd RJ. Fluorine-fluorine spin-spin coupling constants in aromatic compounds: correlations with the delocalization index and with the internuclear separation. Journal of Chemical Information and Modeling. 45: 354-9. PMID 15807499 DOI: 10.1021/Ci0497051  0.571
2005 Dobrin S, Rajamma Harikumar K, Matta CF, Polanyi JC. An STM study of the localized atomic reaction of 1,2- and 1,4-dibromoxylene with Si(1 1 1)-7 × 7 Surface Science. 580: 39-50. DOI: 10.1016/j.susc.2005.01.053  0.517
2005 Castillo N, Matta CF, Boyd RJ. The first example of a cage critical point in a single ring: A novel twisted α-helical ring topology Chemical Physics Letters. 409: 265-269. DOI: 10.1016/J.Cplett.2005.04.088  0.613
2004 Bandrauk AD, Sedik el-WS, Matta CF. Effect of absolute laser phase on reaction paths in laser-induced chemical reactions. The Journal of Chemical Physics. 121: 7764-75. PMID 15485238 DOI: 10.1063/1.1793931  0.409
2004 Matta CF, Polanyi JC. Chemistry on a peg-board: the effect of adatom-adatom separation on the reactivity of dihalobenzenes at Si(111)7 x 7 surfaces. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 362: 1185-94. PMID 15306470 DOI: 10.1098/Rsta.2004.1371  0.515
2003 Wang YG, Matta CF, Werstiuk NH. Comparison of localization and delocalization indices obtained with Hartree-Fock and conventional correlated methods: effect of Coulomb correlation. Journal of Computational Chemistry. 24: 1720-9. PMID 12964190 DOI: 10.1002/jcc.10435  0.314
2003 Matta CF, Bader RF. Atoms-in-molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation-induced changes in protein stability and genetic coding. Proteins. 52: 360-99. PMID 12866050 DOI: 10.1002/Prot.10414  0.731
2003 Matta CF, Hernández-Trujillo J, Tang TH, Bader RF. Hydrogen-hydrogen bonding: a stabilizing interaction in molecules and crystals. Chemistry (Weinheim An Der Bergstrasse, Germany). 9: 1940-51. PMID 12740840 DOI: 10.1002/Chem.200204626  0.763
2003 Matta CF. Application of the quantum theory of atoms in molecules to selected physico-chemical and biophysical problems: focus on correlation with experiment. Journal of Computational Chemistry. 24: 453-63. PMID 12594788 DOI: 10.1002/jcc.10208  0.364
2003 Matta CF, Hernández-Trujillo J. Bonding in Polycyclic Aromatic Hydrocarbons in Terms of the Electron Density and of Electron Delocalization Journal of Physical Chemistry A. 107: 7496-7504. DOI: 10.1021/jp034952d  0.326
2003 Matta CF, Hernández-Trujillo J, Tang TH, Bader RFW. Hydrogen - Hydrogen bonding: A stabilizing interaction in molecules and crystals Chemistry - a European Journal. 9: 1940-1951. DOI: 10.1002/chem.200204626  0.317
2002 Matta CF, Bader RF. Atoms-in-molecules study of the genetically encoded amino acids. II. Computational study of molecular geometries. Proteins. 48: 519-38. PMID 12112676 DOI: 10.1002/Prot.10170  0.77
2002 Matta CF, Hernández-Trujillo J, Bader RFW. Proton spin-spin coupling and electron delocalization Journal of Physical Chemistry A. 106: 7369-7375. DOI: 10.1021/Jp020514F  0.318
2002 Matta CF, Gillespie RJ. Understanding and interpreting molecular electron density distributions Journal of Chemical Education. 79: 1141. DOI: 10.1021/Ed079P1141  0.455
2001 Bader RFW, Matta CF. Bonding to titanium Inorganic Chemistry. 40: 5603-5611. PMID 11599960 DOI: 10.1021/ic010165o  0.48
2001 GILLESPIE RJ, MATTA CF. TEACHING THE VSEPR MODEL AND ELECTRON DENSITIES Chem. Educ. Res. Pract.. 2: 73-90. DOI: 10.1039/B1Rp90010B  0.419
2000 Matta CF, Bader RFW. An Atoms-In-Molecules study of the genetically-encoded amino acids: I . Effects of conformation and of tautomerization on geometric, atomic, and bond properties Proteins: Structure, Function and Genetics. 40: 310-329. PMID 10842344 DOI: 10.1002/(Sici)1097-0134(20000801)40:2<310::Aid-Prot110>3.0.Co;2-A  0.491
1998 Sun S, Britten JF, Cow CN, Matta CF, Harrison PHM. The crystal structure of 3,4,7,8-tetramethylglycoluril Canadian Journal of Chemistry. 76: 301-306. DOI: 10.1139/cjc-76-3-301  0.357
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