Pradeep Kota, Ph.D. - Publications

Affiliations: 
2012 Biochemistry & Biophysics University of North Carolina, Chapel Hill, Chapel Hill, NC 

27/52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Shaaya M, Fauser J, Zhurikhina A, Conage-Pough JE, Huyot V, Brennan M, Flower CT, Matsche J, Khan S, Natarajan V, Rehman J, Kota P, White FM, Tsygankov D, Karginov AV. Light-Regulated allosteric switch enables temporal and subcellular control of enzyme activity. Elife. 9. PMID 32965214 DOI: 10.7554/eLife.60647  0.48
2018 Kota P, Gentzsch M, Dang YL, Boucher RC, Stutts MJ. The N terminus of α-ENaC mediates ENaC cleavage and activation by furin. The Journal of General Physiology. PMID 29980634 DOI: 10.1085/jgp.201711860  0.6
2018 Wang C, Aleksandrov AA, Yang Z, Forouhar F, Proctor EA, Kota P, An J, Kaplan A, Khazanov N, Boël G, Stockwell BR, Senderowitz H, Dokholyan NV, Riordan JR, Brouillette CG, et al. Ligand binding to a remote site thermodynamically corrects the F508del mutation in the human cystic fibrosis transmembrane conductance regulator. The Journal of Biological Chemistry. PMID 29903914 DOI: 10.1074/jbc.RA117.000819  1
2015 Shobair M, Dagliyan O, Kota P, Dang YL, He H, Stutts MJ, Dokholyan NV. Gain-of-function mutation W493R in the epithelial sodium channel allosterically reconfigures intersubunit coupling. The Journal of Biological Chemistry. PMID 26668308 DOI: 10.1074/jbc.M115.678052  1
2015 Proctor EA, Kota P, Aleksandrov AA, He L, Riordan JR, Dokholyan NV. Rational Coupled Dynamics Network Manipulation Rescues Disease-Relevant Mutant Cystic Fibrosis Transmembrane Conductance Regulator. Chemical Science (Royal Society of Chemistry : 2010). 6: 1237-1246. PMID 25685315 DOI: 10.1039/C4SC01320D  1
2014 Kota P, Buchner G, Chakraborty H, Dang YL, He H, Garcia GJ, Kubelka J, Gentzsch M, Stutts MJ, Dokholyan NV. The N-terminal domain allosterically regulates cleavage and activation of the epithelial sodium channel. The Journal of Biological Chemistry. 289: 23029-42. PMID 24973914 DOI: 10.1074/jbc.M114.570952  1
2014 Thompson PM, Tolbert CE, Shen K, Kota P, Palmer SM, Plevock KM, Orlova A, Galkin VE, Burridge K, Egelman EH, Dokholyan NV, Superfine R, Campbell SL. Identification of an actin binding surface on vinculin that mediates mechanical cell and focal adhesion properties. Structure (London, England : 1993). 22: 697-706. PMID 24685146 DOI: 10.1016/j.str.2014.03.002  1
2014 Redler RL, Shirvanyants D, Dagliyan O, Ding F, Kim DN, Kota P, Proctor EA, Ramachandran S, Tandon A, Dokholyan NV. Computational approaches to understanding protein aggregation in neurodegeneration. Journal of Molecular Cell Biology. 6: 104-15. PMID 24620031 DOI: 10.1093/jmcb/mju007  1
2014 He L, Kota P, Aleksandrov AA, Cui L, Jensen T, Dokholyan NV, Riordan JR. Correctors of δF508 CFTR restore global conformational maturation without thermally stabilizing the mutant protein (FASEB Journal (2013) 27 (536 -545) DOI:10.1096/fj.12-216119) Faseb Journal. 28: 2737. DOI: 10.1096/fj.12-216119ERR  1
2013 Chong PA, Kota P, Dokholyan NV, Forman-Kay JD. Dynamics intrinsic to cystic fibrosis transmembrane conductance regulator function and stability. Cold Spring Harbor Perspectives in Medicine. 3: a009522. PMID 23457292 DOI: 10.1101/cshperspect.a009522  1
2013 Proctor EA, Kota P, Demarest SJ, Caravella JA, Dokholyan NV. Highly covarying residues have a functional role in antibody constant domains. Proteins. 81: 884-95. PMID 23280585 DOI: 10.1002/prot.24247  1
2013 Proctor EA, Kota P, Demarest SJ, Caravella JA, Dokholyan NV. Metric to distinguish closely related domain families using sequence information. Journal of Molecular Biology. 425: 475-8. PMID 23219465 DOI: 10.1016/j.jmb.2012.11.031  1
2013 He L, Kota P, Aleksandrov AA, Cui L, Jensen T, Dokholyan NV, Riordan JR. Correctors of ΔF508 CFTR restore global conformational maturation without thermally stabilizing the mutant protein. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 27: 536-45. PMID 23104983 DOI: 10.1096/fj.12-216119  1
2012 Kota P, García-Caballero A, Dang H, Gentzsch M, Stutts MJ, Dokholyan NV. Energetic and structural basis for activation of the epithelial sodium channel by matriptase. Biochemistry. 51: 3460-9. PMID 22471557 DOI: 10.1021/bi2014773  1
2012 Aleksandrov AA, Kota P, Cui L, Jensen T, Alekseev AE, Reyes S, He L, Gentzsch M, Aleksandrov LA, Dokholyan NV, Riordan JR. Allosteric modulation balances thermodynamic stability and restores function of ΔF508 CFTR. Journal of Molecular Biology. 419: 41-60. PMID 22406676 DOI: 10.1016/j.jmb.2012.03.001  1
2012 Pulicherla N, Kota P, Dokholyan NV, Asokan A. Intra- and inter-subunit disulfide bond formation is nonessential in adeno-associated viral capsids. Plos One. 7: e32163. PMID 22389684 DOI: 10.1371/journal.pone.0032163  1
2011 Gyimesi G, Ramachandran S, Kota P, Dokholyan NV, Sarkadi B, Hegedus T. ATP hydrolysis at one of the two sites in ABC transporters initiates transport related conformational transitions. Biochimica Et Biophysica Acta. 1808: 2954-64. PMID 21840296 DOI: 10.1016/j.bbamem.2011.07.038  1
2011 Kufareva I, Rueda M, Katritch V, Stevens RC, Abagyan R. Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment. Structure (London, England : 1993). 19: 1108-26. PMID 21827947 DOI: 10.1016/j.str.2011.05.012  1
2011 Kota P, Ding F, Ramachandran S, Dokholyan NV. Gaia: automated quality assessment of protein structure models. Bioinformatics (Oxford, England). 27: 2209-15. PMID 21700672 DOI: 10.1093/bioinformatics/btr374  1
2011 Kota P, Dokholyan NV. Approaches for probing the sequence space of substrates recognized by molecular chaperones. Methods (San Diego, Calif.). 53: 318-24. PMID 21195183 DOI: 10.1016/j.ymeth.2010.12.034  1
2011 Karginov AV, Zou Y, Shirvanyants D, Kota P, Dokholyan NV, Young DD, Hahn KM, Deiters A. Light regulation of protein dimerization and kinase activity in living cells using photocaged rapamycin and engineered FKBP. Journal of the American Chemical Society. 133: 420-3. PMID 21162531 DOI: 10.1021/ja109630v  1
2011 Ramachandran S, Kota P, Ding F, Dokholyan NV. Automated minimization of steric clashes in protein structures. Proteins. 79: 261-70. PMID 21058396 DOI: 10.1002/prot.22879  1
2010 Karginov AV, Ding F, Kota P, Dokholyan NV, Hahn KM. Engineered allosteric activation of kinases in living cells. Nature Biotechnology. 28: 743-7. PMID 20581846 DOI: 10.1038/nbt.1639  1
2010 Aleksandrov AA, Kota P, Aleksandrov LA, He L, Jensen T, Cui L, Gentzsch M, Dokholyan NV, Riordan JR. Regulatory insertion removal restores maturation, stability and function of DeltaF508 CFTR. Journal of Molecular Biology. 401: 194-210. PMID 20561529 DOI: 10.1016/j.jmb.2010.06.019  1
2010 Gaillard EA, Kota P, Gentzsch M, Dokholyan NV, Stutts MJ, Tarran R. Regulation of the epithelial Na+ channel and airway surface liquid volume by serine proteases. PflüGers Archiv : European Journal of Physiology. 460: 1-17. PMID 20401730 DOI: 10.1007/s00424-010-0827-z  1
2009 Kota P, Summers DW, Ren HY, Cyr DM, Dokholyan NV. Identification of a consensus motif in substrates bound by a Type I Hsp40. Proceedings of the National Academy of Sciences of the United States of America. 106: 11073-8. PMID 19549854 DOI: 10.1073/pnas.0900746106  1
2007 Kota P. GUIMACS - a Java based front end for GROMACS. In Silico Biology. 7: 95-9. PMID 17688433  1
Low-probability matches
2014 Jing H, Dai F, Zhao C, Yang J, Li L, Kota P, Mao L, Xiang K, Zheng C, Yang J. Association of genetic variants in and promoter hypermethylation of CDH1 with gastric cancer: a meta-analysis. Medicine. 93: e107. PMID 25340495 DOI: 10.1097/MD.0000000000000107  0.04
2013 Gyekis JP, Yu W, Dong S, Wang H, Qian J, Kota P, Yang J. No association of genetic variants in BDNF with major depression: a meta- and gene-based analysis. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 162: 61-70. PMID 23184535 DOI: 10.1002/ajmg.b.32122  0.04
2012 Dong S, Yang J, Yu W, Kota P, Xia X, Xu H. No association of genetic polymorphisms in CYP1B1 with primary open-angle glaucoma: a meta- and gene-based analysis. Molecular Vision. 18: 786-96. PMID 22509109  0.04
2005 Kota P, Sundaresan K, Jansen B. Artifacts, habituation and p300-based brain machine interfaces. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 7: 7056-9. PMID 17281900 DOI: 10.1109/IEMBS.2005.1616131  0.01
2001 Chen F, Kota P, Blount JW, Dixon RA. Chemical syntheses of caffeoyl and 5-OH coniferyl aldehydes and alcohols and determination of lignin O-methyltransferase activities in dicot and monocot species. Phytochemistry. 58: 1035-42. PMID 11730866 DOI: 10.1016/S0031-9422(01)00391-0  0.01
2019 Kota P, Terrell EM, Ritt DA, Insinna C, Westlake CJ, Morrison DK. M-Ras/Shoc2 signaling modulates E-cadherin turnover and cell-cell adhesion during collective cell migration. Proceedings of the National Academy of Sciences of the United States of America. 116: 3536-3545. PMID 30808747 DOI: 10.1073/pnas.1805919116  0.01
2015 Nguyen CM, Kota PK, Nguyen MQ, Dubey S, Rao S, Mays J, Chiao JC. Wireless Power Transfer for Autonomous Wearable Neurotransmitter Sensors. Sensors (Basel, Switzerland). 15: 24553-72. PMID 26404311 DOI: 10.3390/s150924553  0.01
2015 Dao HD, Kota P, James JA, Stoner JA, Akins DR. Assessment of Translational and Interdisciplinary Clinical Research at an Oklahoma Health Sciences Center. The Journal of the Oklahoma State Medical Association. 108: 93-101. PMID 26242016  0.01
2015 Perera RH, Hernandez C, Zhou H, Kota P, Burke A, Exner AA. Ultrasound imaging beyond the vasculature with new generation contrast agents. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. 7: 593-608. PMID 25580914 DOI: 10.1002/wnan.1326  0.01
2014 Sokolenko AP, Bulanova DR, Iyevleva AG, Aleksakhina SN, Preobrazhenskaya EV, Ivantsov AO, Kuligina ESh, Mitiushkina NV, Suspitsin EN, Yanus GA, Zaitseva OA, Yatsuk OS, Togo AV, Kota P, Dixon JM, et al. High prevalence of GPRC5A germline mutations in BRCA1-mutant breast cancer patients. International Journal of Cancer. Journal International Du Cancer. 134: 2352-8. PMID 24470238 DOI: 10.1002/ijc.28569  0.01
2014 Wang C, Kota P, Yang Z, Aleksandrov A, An J, Forouhar F, Boel G, Dokholyan N, Riordan J, Brouillette C, Hunt J. A Robust High-Throughput Assay for Thermodynamic Correctors of the Predominant Molecular Defect Causing Cystic Fibrosis Biophysical Journal. 106: 432a. DOI: 10.1016/j.bpj.2013.11.2433  0.01
2012 Gyimesi G, Ramachandran S, Kota P, Dokholyan NV, Sarkadi B, Hegedűs T. Corrigendum to “ATP hydrolysis at one of the two sites in ABC transporters initiates transport related conformational transitions” [Biochim. Biophys. Acta 1808 (2011) 2954–2964] Biochimica Et Biophysica Acta (Bba) - Biomembranes. 1818: 1435. DOI: 10.1016/j.bbamem.2012.01.004  0.01
2008 Madhuravasal V, Kota P, Hutchens C. Efficient gate drive mechanism for novel silicon carbide power FETs Proceedings - 2008 International Symposium On Microelectronics, Imaps 2008. 1126-1133.  0.01
2008 Madhuravasal V, Venkataraman S, Kota P, Liu CM, Hutchens C. Extreme temperature switch mode power supply based on vee-square control using silicon carbide, silicon on sapphire, hybrid technology International Conference and Exhibition On High Temperature Electronics 2008, Hitec 2008. 62-70.  0.01
2006 Kota P, Reeves PJ, Rajbhandary UL, Khorana HG. Opsin is present as dimers in COS1 cells: identification of amino acids at the dimeric interface. Proceedings of the National Academy of Sciences of the United States of America. 103: 3054-9. PMID 16492774 DOI: 10.1073/pnas.0510982103  0.01
2006 Schlegel C, Kempter R, Kota P. A novel random wireless packet multiple access method using CDMA Ieee Transactions On Wireless Communications. 5: 1362-1370. DOI: 10.1109/TWC.2006.1638657  0.01
2005 Kota P, Kannan K, Xiong Z, Topiwala P, Hench D. Rate-adaptive H.264 video for Information for Global Reach (IFGR) Proceedings of Spie - the International Society For Optical Engineering. 5909: 1-12. DOI: 10.1117/12.623855  0.01
2005 Bonala B, Kota P, Sundaresan K, Boutros NN, Jansen BH. Auditory P300 differences between healthy and schizophrenic subjects revealed by single trial analysis 2nd International Ieee Embs Conference On Neural Engineering. 2005: 577-578. DOI: 10.1109/CNE.2005.1419689  0.01
2004 Jansen BH, Allam A, Kota P, Lachance K, Osho A, Sundaresan K. An exploratory study of factors affecting single trial P300 detection. Ieee Transactions On Bio-Medical Engineering. 51: 975-8. PMID 15188867 DOI: 10.1109/TBME.2004.826684  0.01
2004 Kota P, Guo D, Zubieta C, Noel J, Dixon RA. O-Methylation of benzaldehyde derivatives by "lignin specific" caffeic acid 3-O-methyltransferase. Phytochemistry. 65: 837-46. PMID 15081283 DOI: 10.1016/j.phytochem.2004.01.017  0.01
2003 Kota P, Schlegel C. A wireless packet mutiple access method exploiting joint detection Ieee International Conference On Communications. 4: 2985-2990.  0.01
2002 Dixon RA, Achnine L, Kota P, Liu CJ, Reddy MS, Wang L. The phenylpropanoid pathway and plant defence-a genomics perspective. Molecular Plant Pathology. 3: 371-90. PMID 20569344 DOI: 10.1046/j.1364-3703.2002.00131.x  0.01
2002 Zubieta C, Kota P, Ferrer JL, Dixon RA, Noel JP. Structural basis for the modulation of lignin monomer methylation by caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase. The Plant Cell. 14: 1265-77. PMID 12084826 DOI: 10.1105/tpc.001412  0.01
1996 Kota PBVS, Hazlett D, Perrin L. Sulfate-bearing soils: Problems with calcium-based stabilizers Transportation Research Record. 62-69.  0.01
1996 Finlow DE, Kota PR, Bose A. Investigation of wetting hydrodynamics using numerical simulations Physics of Fluids. 8: 302-309.  0.01
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