John Clarke - Publications

Affiliations: 
Physics University of California, Berkeley, Berkeley, CA 
Area:
Condensed Matter Physics, Materials Science, SQUID magnetometer
Website:
http://physics.berkeley.edu/people/faculty/john-clarke

214 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Nandwani M, Clarke JO, Kuriakose C, Stevenson E. Impact of nurse practitioner navigation on access to care for patients with refractory gastroesophageal reflux disease. Journal of the American Association of Nurse Practitioners. PMID 31567776 DOI: 10.1097/JXX.0000000000000296  0.52
2019 Ozeki KA, Zikos TA, Clarke JO, Sonu I. Esophagogastroduodenoscopy and Esophageal Involvement in Patients with Pemphigus Vulgaris. Dysphagia. PMID 31538221 DOI: 10.1007/s00455-019-10055-4  0.52
2019 Haile JK, N'Diaye A, Walkowiak S, Nilsen KT, Clarke JM, Kutcher HR, Steiner B, Buerstmayr H, Pozniak CJ. Fusarium Head Blight in Durum Wheat: Recent Status, Breeding Directions, and Future Research Prospects. Phytopathology. PMID 31369363 DOI: 10.1094/PHYTO-03-19-0095-RVW  0.32
2019 Arman T, Lynch KD, Montonye ML, Goedken M, Clarke JD. Sub-Chronic Microcystin-LR Liver Toxicity in Preexisting Diet-Induced Nonalcoholic Steatohepatitis in Rats. Toxins. 11. PMID 31323923 DOI: 10.3390/toxins11070398  0.44
2019 Podboy A, Hwang JH, Nguyen LA, Garcia P, Zikos TA, Kamal A, Triadafilopoulos G, Clarke JO. Gastric per-oral endoscopic myotomy: Current status and future directions. World Journal of Gastroenterology. 25: 2581-2590. PMID 31210711 DOI: 10.3748/wjg.v25.i21.2581  1
2019 Gyawali CP, Sifrim D, Carlson DA, Hawn M, Katzka DA, Pandolfino JE, Penagini R, Roman S, Savarino E, Tatum R, Vaezi M, Clarke JO, Triadafilopoulos G. Ineffective esophageal motility: Concepts, future directions, and conclusions from the Stanford 2018 symposium. Neurogastroenterology and Motility : the Official Journal of the European Gastrointestinal Motility Society. e13584. PMID 30974032 DOI: 10.1111/nmo.13584  0.52
2019 Kamal AN, Garcia P, Clarke JO. Under Pressure: Do Volume-Based Measurements Define Rectal Hyposensitivity in Clinical Practice? Digestive Diseases and Sciences. PMID 30963367 DOI: 10.1007/s10620-019-05613-7  0.56
2019 Maccaferri M, Harris NS, Twardziok SO, Pasam RK, Gundlach H, Spannagl M, Ormanbekova D, Lux T, Prade VM, Milner SG, Himmelbach A, Mascher M, Bagnaresi P, Faccioli P, Cozzi P, ... ... Clarke JM, et al. Durum wheat genome highlights past domestication signatures and future improvement targets. Nature Genetics. PMID 30962619 DOI: 10.1038/s41588-019-0381-3  0.32
2019 Zikos TA, Kamal AN, Neshatian L, Triadafilopoulos G, Clarke JO, Nandwani M, Nguyen LA. High Prevalence of Slow Transit Constipation in Patients With Gastroparesis. Journal of Neurogastroenterology and Motility. PMID 30870880 DOI: 10.5056/jnm18206  0.56
2019 Parkman HP, Wilson LA, Hasler WL, McCallum RW, Sarosiek I, Koch KL, Abell TL, Schey R, Kuo B, Snape WJ, Nguyen L, Farrugia G, Grover M, Clarke J, Miriel L, et al. Abdominal Pain in Patients with Gastroparesis: Associations with Gastroparesis Symptoms, Etiology of Gastroparesis, Gastric Emptying, Somatization, and Quality of Life. Digestive Diseases and Sciences. PMID 30852767 DOI: 10.1007/s10620-019-05522-9  0.64
2019 Clarke JD, Dzierlenga A, Arman T, Toth E, Li H, Lynch KD, Tian DD, Goedken M, Paine MF, Cherrington N. Nonalcoholic fatty liver disease alters microcystin-LR toxicokinetics and acute toxicity. Toxicon : Official Journal of the International Society On Toxinology. PMID 30849452 DOI: 10.1016/j.toxicon.2019.03.002  0.52
2018 N'Diaye A, Haile JK, Nilsen KT, Walkowiak S, Ruan Y, Singh AK, Clarke FR, Clarke JM, Pozniak CJ. Haplotype Loci Under Selection in Canadian Durum Wheat Germplasm Over 60 Years of Breeding: Association With Grain Yield, Quality Traits, Protein Loss, and Plant Height. Frontiers in Plant Science. 9: 1589. PMID 30455711 DOI: 10.3389/fpls.2018.01589  0.32
2018 Parkman HP, Yamada G, Van Natta ML, Yates K, Hasler WL, Sarosiek I, Grover M, Schey R, Abell TL, Koch KL, Kuo B, Clarke J, Farrugia G, Nguyen L, Snape WJ, et al. Ethnic, Racial, and Sex Differences in Etiology, Symptoms, Treatment, and Symptom Outcomes of Patients with Gastroparesis. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. PMID 30404035 DOI: 10.1016/j.cgh.2018.10.050  0.64
2018 Buckenmaier K, Pedersen A, SanGiorgio P, Scheffler K, Clarke J, Inglis B. Feasibility of functional MRI at ultralow magnetic field via changes in cerebral blood volume. Neuroimage. 186: 185-191. PMID 30394329 DOI: 10.1016/j.neuroimage.2018.10.071  0.32
2018 Sari E, Berraies S, Knox RE, Singh AK, Ruan Y, Cuthbert RD, Pozniak CJ, Henriquez MA, Kumar S, Burt AJ, N'Diaye A, Konkin DJ, Cabral AL, Campbell HL, Wiebe K, ... ... Clarke JM, et al. High density genetic mapping of Fusarium head blight resistance QTL in tetraploid wheat. Plos One. 13: e0204362. PMID 30307951 DOI: 10.1371/journal.pone.0204362  0.32
2018 Jeon J, Holford TR, Levy DT, Feuer EJ, Cao P, Tam J, Clarke L, Clarke J, Kong CY, Meza R. Smoking and Lung Cancer Mortality in the United States From 2015 to 2065: A Comparative Modeling Approach. Annals of Internal Medicine. PMID 30304504 DOI: 10.7326/M18-1250  0.32
2018 Lin X, N'Diaye A, Walkowiak S, Nilsen KT, Cory AT, Haile J, Kutcher HR, Ammar K, Loladze A, Huerta-Espino J, Clarke JM, Ruan Y, Knox R, Fobert P, Sharpe AG, et al. Genetic analysis of resistance to stripe rust in durum wheat (Triticum turgidum L. var. durum). Plos One. 13: e0203283. PMID 30231049 DOI: 10.1371/journal.pone.0203283  0.32
2018 Toth EL, Li H, Dzierlenga AL, Clarke JD, Vildhede A, Goedken M, Cherrington NJ. Gene-by-Environment Interaction of Bcrp-/- and MCD Diet-Induced Nonalcoholic Steatohepatitis Alters SN-38 Disposition. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 30166404 DOI: 10.1124/dmd.118.082081  0.52
2018 Triadafilopoulos G, Clarke JO. Clinical and manometric characteristics of patients with oesophagogastric outflow obstruction: towards a new classification. Bmj Open Gastroenterology. 5: e000210. PMID 30073090 DOI: 10.1136/bmjgast-2018-000210  0.52
2018 Beaver LM, Lӧhr CV, Clarke JD, Glasser ST, Watson GW, Wong CP, Zhang Z, Williams DE, Dashwood RH, Shannon J, Thuillier P, Ho E. Broccoli Sprouts Delay Prostate Cancer Formation and Decrease Prostate Cancer Severity with a Concurrent Decrease in HDAC3 Protein Expression in Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP) Mice. Current Developments in Nutrition. 2: nzy002. PMID 30019025 DOI: 10.1093/cdn/nzy002  0.68
2018 Triadafilopoulos G, Zikos T, Regalia K, Sonu I, Fernandez-Becker NQ, Nguyen L, Nandwani MCR, Clarke JO. Use of Esophageal pH Monitoring to Minimize Proton-Pump Inhibitor Utilization in Patients with Gastroesophageal Reflux Symptoms. Digestive Diseases and Sciences. PMID 29959725 DOI: 10.1007/s10620-018-5183-4  0.52
2018 Zikos TA, Clarke JO, Triadafilopoulos G, Regalia KA, Sonu IS, Fernandez-Becker NQ, Nandwani MC, Nguyen LA. A Positive Correlation Between Gastric and Esophageal Dysmotility Suggests Common Causality. Digestive Diseases and Sciences. PMID 29946871 DOI: 10.1007/s10620-018-5175-4  0.52
2018 Gyawali CP, Azagury DE, Chan WW, Chandramohan SM, Clarke JO, de Bortoli N, Figueredo E, Fox M, Jodorkovsky D, Lazarescu A, Malfertheiner P, Martinek J, Murayama KM, Penagini R, Savarino E, et al. Nonerosive reflux disease: clinical concepts. Annals of the New York Academy of Sciences. PMID 29761528 DOI: 10.1111/nyas.13845  0.64
2018 Clarke JO, Fernandez-Becker NQ, Regalia KA, Triadafilopoulos G. Baclofen and gastroesophageal reflux disease: seeing the forest through the trees. Clinical and Translational Gastroenterology. 9: 137. PMID 29599487 DOI: 10.1038/s41424-018-0010-y  0.52
2018 Tam J, Levy DT, Jeon J, Clarke J, Gilkeson S, Hall T, Feuer EJ, Holford TR, Meza R. Projecting the effects of tobacco control policies in the USA through microsimulation: a study protocol. Bmj Open. 8: e019169. PMID 29574440 DOI: 10.1136/bmjopen-2017-019169  0.32
2018 Siraj ES, Homko C, Wilson LA, May P, Rao AD, Calles J, Farrugia G, Hasler WL, Koch KL, Nguyen L, Snape WJ, Abell TL, Sarosiek I, McCallum RW, Pasricha PJ, ... Clarke J, et al. Islet Cell Associated Autoantibodies and C-Peptide Levels in Patients with Diabetes and Symptoms of Gastroparesis. Frontiers in Endocrinology. 9: 32. PMID 29487566 DOI: 10.3389/fendo.2018.00032  0.64
2018 Chedid V, Rosenblatt E, Gandhi KK, Dhalla S, Nandwani MC, Stein EM, Clarke JO. The Effect of Race in Patients with Achalasia Diagnosed With High-Resolution Esophageal Manometry. The American Journal of the Medical Sciences. 355: 126-131. PMID 29406039 DOI: 10.1016/j.amjms.2017.11.004  0.64
2018 Ahuja NK, Mische L, Clarke JO, Wigley FM, McMahan ZH. Pyridostigmine for the treatment of gastrointestinal symptoms in systemic sclerosis. Seminars in Arthritis and Rheumatism. PMID 29397195 DOI: 10.1016/j.semarthrit.2017.12.007  0.92
2017 Triadafilopoulos G, Nguyen L, Clarke JO. Patients with symptoms of delayed gastric emptying have a high prevalence of oesophageal dysmotility, irrespective of scintigraphic evidence of gastroparesis. Bmj Open Gastroenterology. 4: e000169. PMID 29177065 DOI: 10.1136/bmjgast-2017-000169  0.52
2017 Pasricha PJ, Yates KP, Sarosiek I, McCallum RW, Abell TL, Koch KL, Nguyen LAB, Snape WJ, Hasler WL, Clarke JO, Dhalla S, Stein EM, Lee LA, Miriel LA, Van Natta ML, et al. Aprepitant has Mixed Effects on Nausea and Reduces Other Symptoms in Patients With Gastroparesis and Related Disorders. Gastroenterology. PMID 29111115 DOI: 10.1053/j.gastro.2017.08.033  0.64
2017 Shi Z, Guo J, Clarke J, Jin H, Wang X, Zhang N, Stein E, Dhalla S, Pasricha PJ, Chen JDZ. Roles of High-resolution Manometry in Predicting Incomplete Bolus Transit in Patients With Dysphagia. Journal of Clinical Gastroenterology. PMID 29095422 DOI: 10.1097/MCG.0000000000000949  0.64
2017 N'Diaye A, Haile JK, Cory AT, Clarke FR, Clarke JM, Knox RE, Pozniak CJ. Correction: Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map. Plos One. 12: e0187178. PMID 29065160 DOI: 10.1371/journal.pone.0187178  0.32
2017 Li H, Mark CJ, Clarke JD, Billheimer D, Xanthakos SA, Lavine JE, Erickson RP, Cherrington NJ. Pediatric Cytochrome P450 Activity Alterations in Nonalcoholic Steatohepatitis. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 28986475 DOI: 10.1124/dmd.117.077644  0.44
2017 Nilsen KT, N'Diaye A, MacLachlan PR, Clarke JM, Ruan Y, Cuthbert RD, Knox RE, Wiebe K, Cory AT, Walkowiak S, Beres BL, Graf RJ, Clarke FR, Sharpe AG, Distelfeld A, et al. High density mapping and haplotype analysis of the major stem-solidness locus SSt1 in durum and common wheat. Plos One. 12: e0175285. PMID 28399136 DOI: 10.1371/journal.pone.0175285  0.32
2017 Ahuja NK, Clarke JO. The Role of Impedance Planimetry in the Evaluation of Esophageal Disorders. Current Gastroenterology Reports. 19: 7. PMID 28220362 DOI: 10.1007/s11894-017-0544-2  0.92
2017 Raja S, Okeke FC, Stein EM, Dhalla S, Nandwani M, Lynch KL, Gyawali CP, Clarke JO. Three-Dimensional Anorectal Manometry Enhances Diagnostic Gain by Detecting Sphincter Defects and Puborectalis Pressure. Digestive Diseases and Sciences. PMID 28194667 DOI: 10.1007/s10620-017-4466-5  0.64
2017 Dong H, Hwang SM, Wendland M, You L, Clarke J, Inglis B. Ultralow-field and spin-locking relaxation dispersion in postmortem pig brain. Magnetic Resonance in Medicine. PMID 28164366 DOI: 10.1002/mrm.26621  0.32
2017 N'Diaye A, Haile JK, Cory AT, Clarke FR, Clarke JM, Knox RE, Pozniak CJ. Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map. Plos One. 12: e0170941. PMID 28135299 DOI: 10.1371/journal.pone.0170941  0.32
2017 Ahuja NK, Clarke JO. Pyloric Therapies for Gastroparesis. Current Treatment Options in Gastroenterology. PMID 28124202 DOI: 10.1007/s11938-017-0124-4  0.92
2017 Clarke JD, Novak P, Lake AD, Hardwick RN, Cherrington NJ. Impaired N-linked Glycosylation of Uptake and Efflux Transporters in Human Nonalcoholic Fatty Liver Disease. Liver International : Official Journal of the International Association For the Study of the Liver. PMID 28097795 DOI: 10.1111/liv.13362  0.44
2016 Triadafilopoulos G, Tandon A, Shetler KP, Clarke J. Clinical and pH study characteristics in reflux patients with and without ineffective oesophageal motility (IEM). Bmj Open Gastroenterology. 3: e000126. PMID 28074151 DOI: 10.1136/bmjgast-2016-000126  0.52
2016 Gustavsson S, Yan F, Catelani G, Bylander J, Kamal A, Birenbaum J, Hover D, Rosenberg D, Samach G, Sears AP, Weber SJ, Yoder JL, Clarke J, Kerman AJ, Yoshihara F, et al. Suppressing relaxation in superconducting qubits by quasiparticle pumping. Science (New York, N.Y.). PMID 27940578 DOI: 10.1126/science.aah5844  1
2016 Yan F, Gustavsson S, Kamal A, Birenbaum J, Sears AP, Hover D, Gudmundsen TJ, Rosenberg D, Samach G, Weber S, Yoder JL, Orlando TP, Clarke J, Kerman AJ, Oliver WD. The flux qubit revisited to enhance coherence and reproducibility. Nature Communications. 7: 12964. PMID 27808092 DOI: 10.1038/ncomms12964  1
2016 Li H, Clarke JD, Dzierlenga AL, Bear J, Goedken MJ, Cherrington NJ. In vivo cytochrome P450 activity alterations in diabetic nonalcoholic steatohepatitis mice. Journal of Biochemical and Molecular Toxicology. PMID 27712037 DOI: 10.1002/jbt.21840  0.52
2016 Dzierlenga AL, Clarke JD, Cherrington N. Nonalcoholic Steatohepatitis Modulates Membrane Protein Retrieval and Insertion Processes. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 27604106 DOI: 10.1124/dmd.116.071415  0.52
2016 Laho T, Clarke JD, Dzierlenga AL, Li H, Klein DM, Goedken M, Micuda S, Cherrington NJ. Effect of Nonalcoholic Steatohepatitis on Renal Filtration and Secretion of Adefovir. Biochemical Pharmacology. PMID 27381944 DOI: 10.1016/j.bcp.2016.07.001  0.44
2016 Dzierlenga AL, Clarke JD, Klein DM, Anumol T, Snyder SA, Li HY, Cherrington N. Biliary Elimination of Pemetrexed is Dependent on Mrp2 in Rats: Potential Mechanism of Variable Response in Nonalcoholic Steatohepatitis. The Journal of Pharmacology and Experimental Therapeutics. PMID 27233293 DOI: 10.1124/jpet.116.234310  0.44
2016 El Zein M, Kumbhari V, Ngamruengphong S, Carson KA, Stein E, Tieu A, Chaveze Y, Ismail A, Dhalla S, Clarke J, Kalloo A, Canto MI, Khashab MA. Learning curve for peroral endoscopic myotomy. Endoscopy International Open. 4: E577-82. PMID 27227118 DOI: 10.1055/s-0042-104113  0.64
2016 Li S, Tuft B, Xu L, Polacco M, Clarke JC, Guymon CA, Hansen MR. Intracellular calcium and cyclic nucleotide levels modulate neurite guidance by microtopographical substrate features. Journal of Biomedical Materials Research. Part A. PMID 27062708 DOI: 10.1002/jbm.a.35738  0.32
2016 Zhang Z, Lee Y, Sivertsen A, Skjeseth G, Haugslien S, Clarke JL, Wang QC, Blystad DR. Low Temperature Treatment Affects Concentration and Distribution of Chrysanthemum Stunt Viroid in Argyranthemum. Frontiers in Microbiology. 7: 224. PMID 26973607 DOI: 10.3389/fmicb.2016.00224  0.68
2016 Christopher PP, Stein MD, Johnson JE, Rich JD, Friedmann PD, Clarke J, Lidz CW. Exploitation of Prisoners in Clinical Research: Perceptions of Study Participants. Irb. 38: 7-12. PMID 26964404  0.48
2016 Ahuja NK, Clarke JO. Evaluation and Management of Infectious Esophagitis in Immunocompromised and Immunocompetent Individuals. Current Treatment Options in Gastroenterology. PMID 26847359 DOI: 10.1007/s11938-016-0082-2  0.92
2016 Nilsen KT, Clarke JM, Beres BL, Pozniak CJ. Sowing density and cultivar effects on pith expression in solid-stemmed durum wheat Agronomy Journal. 108: 219-228. DOI: 10.2134/agronj2015.0298  0.32
2016 Chang YH, Solak S, Clarke JPB, Johnson EL. Models for single-sector stochastic air traffic flow management under reduced airspace capacity Journal of the Operational Research Society. 67: 54-67. DOI: 10.1057/jors.2015.53  0.36
2016 Li Z, Clarke JA. The Craniolingual Morphology of Waterfowl (Aves, Anseriformes) and Its Relationship with Feeding Mode Revealed Through Contrast-Enhanced X-Ray Computed Tomography and 2D Morphometrics Evolutionary Biology. 43: 12-25. DOI: 10.1007/s11692-015-9345-4  0.64
2016 Balakrishnan H, Clarke JP, Feron EM, Hansman RJ, Jimenez H. Challenges in Aerospace decision and control: Air transportation systems Lecture Notes in Control and Information Sciences. 460: 109-136. DOI: 10.1007/978-3-662-47694-9_4  0.36
2016 Park SG, Clarke JP, Feron E, Jimenez H. Encounter rate estimation of continuous descent arrival procedures in terminal area 2016 Aiaa Guidance, Navigation, and Control Conference 0.36
2016 Christopher PP, Stein MD, Johnson JE, Rich JD, Friedmann PD, Clarke J, Lidz CW. Exploitation of prisoners in clinical research: Perceptions of study participants Irb Ethics and Human Research. 38: 7-12.  0.48
2015 Peng B, Chen HS, Mechanic LE, Racine B, Clarke J, Gillanders E, Feuer EJ. Genetic data simulators and their applications: an overview. Genetic Epidemiology. 39: 2-10. PMID 25504286 DOI: 10.1002/gepi.21876  0.32
2015 Canet MJ, Hardwick RN, Lake AD, Dzierlenga AL, Clarke JD, Goedken MJ, Cherrington NJ. Renal xenobiotic transporter expression is altered in multiple experimental models of nonalcoholic steatohepatitis. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 43: 266-72. PMID 25488932 DOI: 10.1124/dmd.114.060574  0.44
2015 Roland BC, Ciarleglio MM, Clarke JO, Semler JR, Tomakin E, Mullin GE, Pasricha PJ. Small Intestinal Transit Time Is Delayed in Small Intestinal Bacterial Overgrowth. Journal of Clinical Gastroenterology. 49: 571-6. PMID 25319735 DOI: 10.1097/MCG.0000000000000257  0.64
2015 Chavez YH, Ciarleglio MM, Clarke JO, Nandwani M, Stein E, Roland BC. Upper esophageal sphincter abnormalities: frequent finding on high-resolution esophageal manometry and associated with poorer treatment response in achalasia. Journal of Clinical Gastroenterology. 49: 17-23. PMID 24859712 DOI: 10.1097/MCG.0000000000000157  0.64
2015 Pozniak CJ, Clarke JM. CDC carbide durum wheat | Le blé dur CDC Carbide Canadian Journal of Plant Science. 95: 1007-1012. DOI: 10.4141/CJPS-2015-045  0.32
2015 Pozniak CJ, Nilsen K, Clarke JM, Beres BL. CDC fortitude durum wheat | Le blé dur CDC Fortitude Canadian Journal of Plant Science. 95: 1013-1019. DOI: 10.4141/CJPS-2015-042  0.32
2015 Cruciol L, Clarke JP, Weigang L. Trajectory Option Set Planning Optimization under Uncertainty in CTOP Ieee Conference On Intelligent Transportation Systems, Proceedings, Itsc. 2015: 2084-2089. DOI: 10.1109/ITSC.2015.337  0.36
2015 Krupke C, Wang J, Clarke J, Luo X. Dynamic modelling of a hybrid wind turbine in connection with compressed air energy storage through a power split transmission device Ieee/Asme International Conference On Advanced Intelligent Mechatronics, Aim. 2015: 79-84. DOI: 10.1109/AIM.2015.7222512  0.6
2014 Kamal A, Roy A, Clarke J, Devoret MH. Asymmetric frequency conversion in nonlinear systems driven by a biharmonic pump. Physical Review Letters. 113: 247003. PMID 25541797 DOI: 10.1103/PhysRevLett.113.247003  1
2014 Maccaferri M, Cane' MA, Sanguineti MC, Salvi S, Colalongo MC, Massi A, Clarke F, Knox R, Pozniak CJ, Clarke JM, Fahima T, Dubcovsky J, Xu S, Ammar K, Karsai I, et al. A consensus framework map of durum wheat (Triticum durum Desf.) suitable for linkage disequilibrium analysis and genome-wide association mapping. Bmc Genomics. 15: 873. PMID 25293821 DOI: 10.1186/1471-2164-15-873  0.32
2014 Mathews SC, Ciarleglio M, Chavez YH, Clarke JO, Stein E, Chander Roland B. Upper esophageal sphincter abnormalities are strongly predictive of treatment response in patients with achalasia. World Journal of Clinical Cases. 2: 448-54. PMID 25232548 DOI: 10.12998/wjcc.v2.i9.448  0.64
2014 Hardwick RN, Clarke JD, Lake AD, Canet MJ, Anumol T, Street SM, Merrell MD, Goedken MJ, Snyder SA, Cherrington NJ. Increased susceptibility to methotrexate-induced toxicity in nonalcoholic steatohepatitis. Toxicological Sciences : An Official Journal of the Society of Toxicology. 142: 45-55. PMID 25080921 DOI: 10.1093/toxsci/kfu156  0.44
2014 Chedid V, Dhalla S, Clarke JO, Roland BC, Dunbar KB, Koh J, Justino E, Tomakin E, Mullin GE. Herbal therapy is equivalent to rifaximin for the treatment of small intestinal bacterial overgrowth. Global Advances in Health and Medicine : Improving Healthcare Outcomes Worldwide. 3: 16-24. PMID 24891990 DOI: 10.7453/gahmj.2014.019  0.64
2014 Roland BC, Ciarleglio MM, Clarke JO, Semler JR, Tomakin E, Mullin GE, Pasricha PJ. Low ileocecal valve pressure is significantly associated with small intestinal bacterial overgrowth (SIBO). Digestive Diseases and Sciences. 59: 1269-77. PMID 24795035 DOI: 10.1007/s10620-014-3166-7  0.64
2014 Zevenhoven KC, Busch S, Hatridge M, Oisjöen F, Ilmoniemi RJ, Clarke J. Conductive shield for ultra-low-field magnetic resonance imaging: Theory and measurements of eddy currents. Journal of Applied Physics. 115: 103902. PMID 24753629 DOI: 10.1063/1.4867220  1
2014 Clarke JD, Hardwick RN, Lake AD, Lickteig AJ, Goedken MJ, Klaassen CD, Cherrington NJ. Synergistic interaction between genetics and disease on pravastatin disposition. Journal of Hepatology. 61: 139-47. PMID 24613363 DOI: 10.1016/j.jhep.2014.02.021  0.44
2014 Jodorkovsky D, Price JC, Kim B, Dhalla S, Stein EM, Clarke JO. Multichannel intraluminal impedance-pH testing is clinically useful in the management of patients with gastroesophageal reflux symptoms. Digestive Diseases and Sciences. 59: 1817-22. PMID 24563276 DOI: 10.1007/s10620-014-3080-z  0.64
2014 Clarke JD, Hardwick RN, Lake AD, Canet MJ, Cherrington NJ. Experimental nonalcoholic steatohepatitis increases exposure to simvastatin hydroxy acid by decreasing hepatic organic anion transporting polypeptide expression. The Journal of Pharmacology and Experimental Therapeutics. 348: 452-8. PMID 24403518 DOI: 10.1124/jpet.113.211284  0.44
2014 Canet MJ, Hardwick RN, Lake AD, Dzierlenga AL, Clarke JD, Cherrington NJ. Modeling human nonalcoholic steatohepatitis-associated changes in drug transporter expression using experimental rodent models. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 42: 586-95. PMID 24384915 DOI: 10.1124/dmd.113.055996  0.44
2014 Merrell MD, Nyagode BA, Clarke JD, Cherrington NJ, Morgan ET. Selective and cytokine-dependent regulation of hepatic transporters and bile acid homeostasis during infectious colitis in mice. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 42: 596-602. PMID 24378326 DOI: 10.1124/dmd.113.055525  0.44
2014 Khashab MA, Saxena P, Kumbhari V, Nandwani M, Roland BC, Stein E, Clarke JO, Stavropoulos S, Inoue H, Pasricha PJ. Peroral endoscopic myotomy as a platform for the treatment of spastic esophageal disorders refractory to medical therapy (with video). Gastrointestinal Endoscopy. 79: 136-9. PMID 24342590 DOI: 10.1016/j.gie.2013.08.021  0.64
2014 Khashab MA, Messallam AA, Saxena P, Kumbhari V, Ricourt E, Aguila G, Roland BC, Stein E, Nandwani M, Inoue H, Clarke JO. Jet injection of dyed saline facilitates efficient peroral endoscopic myotomy. Endoscopy. 46: 298-301. PMID 24338241 DOI: 10.1055/s-0033-1359024  0.64
2014 Boss MA, Mates JA, Busch SE, SanGiorgio P, Russek SE, Buckenmaier K, Irwin KD, Cho HM, Hilton GC, Clarke J. Prototype phantoms for characterization of ultralow field magnetic resonance imaging. Magnetic Resonance in Medicine. 72: 1793-800. PMID 24281979 DOI: 10.1002/mrm.25060  1
2014 Clarke JD, Sharapova T, Lake AD, Blomme E, Maher J, Cherrington NJ. Circulating microRNA 122 in the methionine and choline-deficient mouse model of non-alcoholic steatohepatitis. Journal of Applied Toxicology : Jat. 34: 726-32. PMID 24217942 DOI: 10.1002/jat.2960  0.44
2014 Clarke JD, Novak P, Lake AD, Shipkova P, Aranibar N, Robertson D, Severson PL, Reily MD, Futscher BW, Lehman-McKeeman LD, Cherrington NJ. Characterization of hepatocellular carcinoma related genes and metabolites in human nonalcoholic fatty liver disease. Digestive Diseases and Sciences. 59: 365-74. PMID 24048683 DOI: 10.1007/s10620-013-2873-9  0.44
2014 Pourkabirian A, Gustafsson MV, Johansson G, Clarke J, Delsing P. Nonequilibrium probing of two-level charge fluctuators using the step response of a single-electron transistor Physical Review Letters. 113. DOI: 10.1103/PhysRevLett.113.256801  1
2014 Atalaya J, Clarke J, Schön G, Shnirman A. Flux 1/f ± noise in two-dimensional Heisenberg spin glasses: Effects of weak anisotropic interactions Physical Review B - Condensed Matter and Materials Physics. 90. DOI: 10.1103/PhysRevB.90.014206  1
2013 Anton SM, Birenbaum JS, O'Kelley SR, Bolkhovsky V, Braje DA, Fitch G, Neeley M, Hilton GC, Cho HM, Irwin KD, Wellstood FC, Oliver WD, Shnirman A, Clarke J. Magnetic flux noise in dc SQUIDs: temperature and geometry dependence. Physical Review Letters. 110: 147002. PMID 25167026 DOI: 10.1103/PhysRevLett.110.147002  1
2013 Inglis B, Buckenmaier K, Sangiorgio P, Pedersen AF, Nichols MA, Clarke J. MRI of the human brain at 130 microtesla. Proceedings of the National Academy of Sciences of the United States of America. 110: 19194-201. PMID 24255111 DOI: 10.1073/pnas.1319334110  1
2013 Khashab MA, Stein E, Clarke JO, Saxena P, Kumbhari V, Chander Roland B, Kalloo AN, Stavropoulos S, Pasricha P, Inoue H. Gastric peroral endoscopic myotomy for refractory gastroparesis: first human endoscopic pyloromyotomy (with video). Gastrointestinal Endoscopy. 78: 764-8. PMID 24120337 DOI: 10.1016/j.gie.2013.07.019  0.64
2013 Kim KJ, Victor D, Stein E, Valeshabad AK, Saxena P, Singh VK, Lennon AM, Clarke JO, Khashab MA. A novel ballooned-tip percutaneous endoscopic gastrojejunostomy tube: a pilot study. Gastrointestinal Endoscopy. 78: 154-7. PMID 23622977 DOI: 10.1016/j.gie.2013.03.005  0.64
2013 Peng B, Chen HS, Mechanic LE, Racine B, Clarke J, Clarke L, Gillanders E, Feuer EJ. Genetic Simulation Resources: a website for the registration and discovery of genetic data simulators. Bioinformatics (Oxford, England). 29: 1101-2. PMID 23435068 DOI: 10.1093/bioinformatics/btt094  0.32
2013 Meyer M, Kesic MJ, Clarke J, Ho E, Simmen RC, Diaz-Sanchez D, Noah TL, Jaspers I. Sulforaphane induces SLPI secretion in the nasal mucosa. Respiratory Medicine. 107: 472-5. PMID 23195333 DOI: 10.1016/j.rmed.2012.11.006  0.44
2013 Fourie C, Anton SM, Clarke J. Magnetic field calculations in the vicinity of superconductive circuit structures 2013 Ieee 14th Internationalsuperconductive Electronics Conference, Isec 2013. DOI: 10.1109/ISEC.2013.6604305  1
2013 Gustafsson MV, Pourkabirian A, Johansson G, Clarke J, Delsing P. Thermal properties of charge noise sources Physical Review B - Condensed Matter and Materials Physics. 88. DOI: 10.1103/PhysRevB.88.245410  1
2013 Anton SM, Sognnaes IAB, Birenbaum JS, O'Kelley SR, Fourie CJ, Clarke J. Mean square flux noise in SQUIDs and qubits: Numerical calculations Superconductor Science and Technology. 26. DOI: 10.1088/0953-2048/26/7/075022  1
2012 Ruan Y, Comeau A, Langevin F, Hucl P, Clarke JM, Brule-Babel A, Pozniak CJ. Identification of novel QTL for resistance to Fusarium head blight in a tetraploid wheat population. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 55: 853-64. PMID 23231604 DOI: 10.1139/gen-2012-0110  0.32
2012 Johnson JE, Macklin C, Slichter DH, Vijay R, Weingarten EB, Clarke J, Siddiqi I. Heralded state preparation in a superconducting qubit. Physical Review Letters. 109: 050506. PMID 23006157 DOI: 10.1103/PhysRevLett.109.050506  1
2012 Dobbs MA, Lueker M, Aird KA, Bender AN, Benson BA, Bleem LE, Carlstrom JE, Chang CL, Cho HM, Clarke J, Crawford TM, Crites AT, Flanigan DI, de Haan T, George EM, et al. Frequency multiplexed superconducting quantum interference device readout of large bolometer arrays for cosmic microwave background measurements. The Review of Scientific Instruments. 83: 073113. PMID 22852677 DOI: 10.1063/1.4737629  1
2012 Busch S, Hatridge M, Mößle M, Myers W, Wong T, Mück M, Chew K, Kuchinsky K, Simko J, Clarke J. Measurements of T(1) -relaxation in ex vivo prostate tissue at 132 μT. Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine. 67: 1138-45. PMID 22294500 DOI: 10.1002/mrm.24177  1
2012 Clarke JD, Cherrington NJ. Genetics or environment in drug transport: the case of organic anion transporting polypeptides and adverse drug reactions. Expert Opinion On Drug Metabolism & Toxicology. 8: 349-60. PMID 22280100 DOI: 10.1517/17425255.2012.656087  0.44
2012 Kamal A, Clarke J, Devoret MH. Gain, directionality, and noise in microwave SQUID amplifiers: Input-output approach Physical Review B - Condensed Matter and Materials Physics. 86. DOI: 10.1103/PhysRevB.86.144510  1
2012 Anton SM, Müller C, Birenbaum JS, O'Kelley SR, Fefferman AD, Golubev DS, Hilton GC, Cho HM, Irwin KD, Wellstood FC, Schön G, Shnirman A, Clarke J. Pure dephasing in flux qubits due to flux noise with spectral density scaling as 1/fα Physical Review B - Condensed Matter and Materials Physics. 85. DOI: 10.1103/PhysRevB.85.224505  1
2012 Anton SM, Nugroho CD, Birenbaum JS, O'Kelley SR, Orlyanchik V, Dove AF, Olson GA, Yoscovits ZR, Eckstein JN, Van Harlingen DJ, Clarke J. Low-frequency critical current noise in Josephson junctions induced by temperature fluctuations Applied Physics Letters. 101. DOI: 10.1063/1.4749282  1
2011 Schwan D, Ade PA, Basu K, Bender AN, Bertoldi F, Cho HM, Chon G, Clarke J, Dobbs M, Ferrusca D, Güsten R, Halverson NW, Holzapfel WL, Horellou C, Johansson D, et al. Invited article: millimeter-wave bolometer array receiver for the Atacama pathfinder experiment Sunyaev-Zel'dovich (APEX-SZ) instrument. The Review of Scientific Instruments. 82: 091301. PMID 21974566 DOI: 10.1063/1.3637460  1
2011 Clarke JD, Riedl K, Bella D, Schwartz SJ, Stevens JF, Ho E. Comparison of isothiocyanate metabolite levels and histone deacetylase activity in human subjects consuming broccoli sprouts or broccoli supplement. Journal of Agricultural and Food Chemistry. 59: 10955-63. PMID 21928849 DOI: 10.1021/jf202887c  0.44
2011 Clarke JD, Hsu A, Riedl K, Bella D, Schwartz SJ, Stevens JF, Ho E. Bioavailability and inter-conversion of sulforaphane and erucin in human subjects consuming broccoli sprouts or broccoli supplement in a cross-over study design. Pharmacological Research : the Official Journal of the Italian Pharmacological Society. 64: 456-63. PMID 21816223 DOI: 10.1016/j.phrs.2011.07.005  0.44
2011 Clarke JD, Hsu A, Williams DE, Dashwood RH, Stevens JF, Yamamoto M, Ho E. Metabolism and tissue distribution of sulforaphane in Nrf2 knockout and wild-type mice. Pharmaceutical Research. 28: 3171-9. PMID 21681606 DOI: 10.1007/s11095-011-0500-z  0.44
2011 Clarke JD, Hsu A, Yu Z, Dashwood RH, Ho E. Differential effects of sulforaphane on histone deacetylases, cell cycle arrest and apoptosis in normal prostate cells versus hyperplastic and cancerous prostate cells. Molecular Nutrition & Food Research. 55: 999-1009. PMID 21374800 DOI: 10.1002/mnfr.201000547  0.44
2011 Asztalos SJ, Bradley R, Carosi G, Clarke J, Hagmann C, Hoskins J, Hotz M, Kinion D, Martin C, Rosenberg LJ, Rybka G, Sikivie P, Sullivan NS, Tanner DB, Van Bibber K, et al. The Axion Dark-Matter eXperiment: Results and plans Proceedings of the 7th Patras Workshop On Axions, Wimps and Wisps, Patras 2011. 47-50. DOI: 10.3204/DESY-PROC-2011-04/rybka-gray  1
2011 Wellstood FC, Urbina C, Clarke J. Role of geometry on the color of flux noise in dc SQUIDs Ieee Transactions On Applied Superconductivity. 21: 856-859. DOI: 10.1109/TASC.2010.2093092  1
2011 Hoskins J, Hwang J, Martin C, Sikivie P, Sullivan NS, Tanner DB, Hotz M, Rosenberg LJ, Rybka G, Wagner A, Asztalos SJ, Carosi G, Hagmann C, Kinion D, Van Bibber K, ... ... Clarke J, et al. Search for nonvirialized axionic dark matter Physical Review D - Particles, Fields, Gravitation and Cosmology. 84. DOI: 10.1103/PhysRevD.84.121302  1
2011 Johnson JE, Hoskinson EM, MacKlin C, Slichter DH, Siddiqi I, Clarke J. Dispersive readout of a flux qubit at the single-photon level Physical Review B - Condensed Matter and Materials Physics. 84. DOI: 10.1103/PhysRevB.84.220503  1
2011 Hatridge M, Vijay R, Slichter DH, Clarke J, Siddiqi I. Dispersive magnetometry with a quantum limited SQUID parametric amplifier Physical Review B - Condensed Matter and Materials Physics. 83. DOI: 10.1103/PhysRevB.83.134501  1
2011 Kinion D, Clarke J. Superconducting quantum interference device as a near-quantum-limited amplifier for the axion dark-matter experiment Applied Physics Letters. 98. DOI: 10.1063/1.3583380  1
2011 Kamal A, Clarke J, Devoret MH. Noiseless non-reciprocity in a parametric active device Nature Physics. 7: 311-315. DOI: 10.1038/nphys1893  1
2011 Asztalos SJ, Carosi G, Hagmann C, Kinion D, Van Bibber K, Hotz M, J Rosenberg L, Rybka G, Wagner A, Hoskins J, Martin C, Sullivan NS, Tanner DB, Bradley R, Clarke J. Design and performance of the ADMX SQUID-based microwave receiver Nuclear Instruments and Methods in Physics Research, Section a: Accelerators, Spectrometers, Detectors and Associated Equipment. 656: 39-44. DOI: 10.1016/j.nima.2011.07.019  1
2011 Asztalos SJ, Caosi G, Hagmann C, Kinion D, Van Bibber K, Bradley R, Clarke J, Martin C, Sikivie P, Sulliva NS, Tanner DB, Hotz M, Lyapustin D, Rosenberg LJ, Rybka G, et al. The axion dark matter eXperiment Proceedings of the 31st International Conference On Physics in Collision, Pic 2011 1
2010 Clarke J. SQUIDs: Then and now International Journal of Modern Physics B. 24: 3999-4038. DOI: 10.1142/S0217979210056438  1
2010 Wagner A, Rybka G, Hotz M, Rosenberg LJ, Asztalos SJ, Carosi G, Hagmann C, Kinion D, Van Bibber K, Hoskins J, Martin C, Sikivie P, Tanner DB, Bradley R, Clarke J. Search for hidden sector photons with the ADMX detector Physical Review Letters. 105. DOI: 10.1103/PhysRevLett.105.171801  1
2010 Rybka G, Hotz M, Rosenberg LJ, Asztalos SJ, Carosi G, Hagmann C, Kinion D, Van Bibber K, Hoskins J, Martin C, Sikivie P, Tanner DB, Bradley R, Clarke J. Search for chameleon scalar fields with the axion dark matter experiment Physical Review Letters. 105. DOI: 10.1103/PhysRevLett.105.051801  1
2010 Asztalos SJ, Carosi G, Hagmann C, Kinion D, Van Bibber K, Hotz M, Rosenberg LJ, Rybka G, Hoskins J, Hwang J, Sikivie P, Tanner DB, Bradley R, Clarke J. SQUID-based microwave cavity search for dark-matter axions Physical Review Letters. 104. DOI: 10.1103/PhysRevLett.104.041301  1
2010 Kinion D, Clarke J. Microstrip superconducting quantum interference device amplifier: Conditional stability Applied Physics Letters. 96. DOI: 10.1063/1.3377898  1
2009 Choi S, Lee DH, Louie SG, Clarke J. Localization of metal-induced gap states at the metal-insulator interface: origin of flux noise in SQUIDs and superconducting qubits. Physical Review Letters. 103: 197001. PMID 20365945 DOI: 10.1103/PhysRevLett.103.197001  1
2009 Ho E, Clarke JD, Dashwood RH. Dietary sulforaphane, a histone deacetylase inhibitor for cancer prevention. The Journal of Nutrition. 139: 2393-6. PMID 19812222 DOI: 10.3945/jn.109.113332  0.44
2009 Cybart SA, Anton SM, Wu SM, Clarke J, Dynes RC. Very large scale integration of nanopatterned YBa2Cu3O7-delta Josephson junctions in a two-dimensional array. Nano Letters. 9: 3581-5. PMID 19751069 DOI: 10.1021/nl901785j  1
2009 Kelso N, Lee SK, Bouchard LS, Demas V, Mück M, Pines A, Clarke J. Distortion-free magnetic resonance imaging in the zero-field limit. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 200: 285-90. PMID 19664947 DOI: 10.1016/j.jmr.2009.07.016  1
2009 Halverson NW, Lanting T, Ade PAR, Basu K, Bender AN, Benson BA, Bertoldi F, Cho HM, Chon G, Clarke J, Dobbs M, Ferrusca D, Güsten R, Holzapfel WL, Kovcs A, et al. Sunyaev-zel'dovich effect observations of the bullet cluster (1E 0657-56) with APEX-SZ Astrophysical Journal. 701: 42-51. DOI: 10.1088/0004-637X/701/1/42  1
2009 Clarke J. The Microstrip SQUID amplifier: Searching for the axion Aip Conference Proceedings. 1185: 521. DOI: 10.1063/1.3292393  1
2009 Westbrook B, Ade PAR, Bender AN, Cho HM, Clarke J, Dobbs M, Ferrusca D, Halverson NW, Holzapfel WL, Johnson BR, Kennedy J, Kermish Z, Lanting T, Lee AT, Lueker M, et al. Further optimization of the APEX-SZ TES bolometer array Aip Conference Proceedings. 1185: 363-366. DOI: 10.1063/1.3292353  1
2009 Lueker M, Benson B, Bleem L, Chang C, Cho HM, Clarke J, Crites A, Crawford T, Dobbs M, Holzapfel W, Lanting T, Lee A, Mehl J, Plagge T, Shirokoff E, et al. A frequency domain multiplexed receiver for the South Pole Telescope Aip Conference Proceedings. 1185: 241-244. DOI: 10.1063/1.3292323  1
2009 Nord M, Basu K, Pacaud F, Ade PAR, Bender AN, Benson BA, Bertoldi F, Cho HM, Chon G, Clarke J, Dobbs M, Ferrusca D, Halverson NW, Holzapfel WL, Horellou C, et al. Multi-frequency imaging of the galaxy cluster Abell 2163 using the sunyaev-Zel'dovich effect Astronomy and Astrophysics. 506: 623-636. DOI: 10.1051/0004-6361/200911746  1
2008 Clarke J, Wilhelm FK. Superconducting quantum bits. Nature. 453: 1031-42. PMID 18563154 DOI: 10.1038/nature07128  0.68
2008 Clarke JD, Dashwood RH, Ho E. Multi-targeted prevention of cancer by sulforaphane. Cancer Letters. 269: 291-304. PMID 18504070 DOI: 10.1016/j.canlet.2008.04.018  0.44
2008 Cybart SA, Wu SM, Anton SM, Siddiqi I, Clarke J, Dynes RC. Series array of incommensurate superconducting quantum interference devices from YBa2Cu3O7-δ ion damage Josephson junctions Applied Physics Letters. 93. DOI: 10.1063/1.3013579  1
2008 Kinion D, Clarke J. Microstrip superconducting quantum interference device radio-frequency amplifier: Scattering parameters and input coupling Applied Physics Letters. 92. DOI: 10.1063/1.2902173  1
2008 Clarke J, Wilhelm FK. Superconducting quantum bits Nature. 453: 1031-1042. DOI: 10.1038/nature07128  1
2008 Lee TK, Morris JW, Lee S, Clarke J. Detetcting fatigue damage with scanning SQUID microscopy Tms Annual Meeting. 41-46.  1
2007 Myers W, Slichter D, Hatridge M, Busch S, Mössle M, McDermott R, Trabesinger A, Clarke J. Calculated signal-to-noise ratio of MRI detected with SQUIDs and Faraday detectors in fields from 10 microT to 1.5 T. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 186: 182-92. PMID 17337220 DOI: 10.1016/j.jmr.2007.02.007  1
2007 Clarke J, Hatridge M, Mößle M. SQUID-detected magnetic resonance imaging in microtesla fields Annual Review of Biomedical Engineering. 9: 389-413. PMID 17328671 DOI: 10.1146/annurev.bioeng.9.060906.152010  1
2007 Koch RH, Divincenzo DP, Clarke J. Model for 1/f flux noise in SQUIDs and qubits Physical Review Letters. 98. DOI: 10.1103/PhysRevLett.98.267003  1
2007 Vaz CAF, Lauhoff G, Bland JAC, Langridge S, Bucknall DG, Penfold J, Clarke J, Halder SK, Tanner BK. Interface dependent magnetic moments in Cu/Co,Ni/Cu/Si(0 0 1) epitaxial structures Journal of Magnetism and Magnetic Materials. 313: 89-97. DOI: 10.1016/j.jmmm.2006.12.008  1
2007 Kleiner R, Koelle D, Clarke J. A numerical treatment of the rf SQUID: II. Noise temperature Journal of Low Temperature Physics. 149: 261-293. DOI: 10.1007/s10909-007-9512-9  1
2007 Kleiner R, Koelle D, Clarke J. A numerical treatment of the rf SQUID: I. General properties and noise energy Journal of Low Temperature Physics. 149: 230-260. DOI: 10.1007/s10909-007-9511-x  1
2006 Hime T, Reichardt PA, Plourde BL, Robertson TL, Wu CE, Ustinov AV, Clarke J. Solid-state qubits with current-controlled coupling. Science (New York, N.Y.). 314: 1427-9. PMID 17138895 DOI: 10.1126/science.1134388  1
2006 Siddiqi I, Clarke J. Physics. Entangled solid-state circuits. Science (New York, N.Y.). 313: 1400-1. PMID 16959997 DOI: 10.1126/science.1132544  1
2006 Lee SK, Hahn EL, Clarke J. Static nuclear spin polarization induced in a liquid by a rotating magnetic field. Physical Review Letters. 96: 257601. PMID 16907343 DOI: 10.1103/PhysRevLett.96.257601  1
2006 Fu HC, Seidel A, Clarke J, Lee DH. Stabilizing superconductivity in nanowires by coupling to dissipative environments. Physical Review Letters. 96: 157005. PMID 16712190 DOI: 10.1103/PhysRevLett.96.157005  0.52
2006 Mössle M, Han SI, Myers WR, Lee SK, Kelso N, Hatridge M, Pines A, Clarke J. SQUID-detected microtesla MRI in the presence of metal. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 179: 146-51. PMID 16310385 DOI: 10.1016/j.jmr.2005.11.005  1
2006 Robertson TL, Plourde BLT, Reichardt PA, Hime T, Wu CE, Clarke J. Quantum theory of three-junction flux qubit with non-negligible loop inductance: Towards scalability Physical Review B - Condensed Matter and Materials Physics. 73. DOI: 10.1103/PhysRevB.73.174526  1
2006 Lee TK, Morris JW, Lee S, Clarke J. Detection of fatigue damage prior crack initiation with scanning SQUID microscopy Aip Conference Proceedings. 820: 1378-1385. DOI: 10.1063/1.2184685  1
2006 Clarke J, Larbalestier DC. Wired for the future Nature Physics. 2: 794-796. DOI: 10.1038/nphys472  1
2006 Lanting TM, Arnold K, Cho HM, Clarke J, Dobbs M, Holzapfel W, Lee AT, Lueker M, Richards PL, Smith AD, Spieler HG. Frequency-domain readout multiplexing of transition-edge sensor arrays Nuclear Instruments and Methods in Physics Research, Section a: Accelerators, Spectrometers, Detectors and Associated Equipment. 559: 793-795. DOI: 10.1016/j.nima.2005.12.142  1
2006 Clarke J, Lee AT, Mück M, Richards PL. SQUID Voltmeters and Amplifiers The Squid Handbook: Applications of Squids and Squid Systems. 2: 1-93. DOI: 10.1002/9783527609956.ch8  1
2006 Clarke J, Braginski AI. The SQUID Handbook The Squid Handbook. 2: 1-634. DOI: 10.1002/9783527609956  1
2005 Myers WR, Mössle M, Clarke J. Correction of concomitant gradient artifacts in experimental microtesla MRI. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 177: 274-84. PMID 16169266 DOI: 10.1016/j.jmr.2005.08.003  1
2005 Lee SK, Mössle M, Myers W, Kelso N, Trabesinger AH, Pines A, Clarke J. SQUID-detected MRI at 132 microT with T1-weighted contrast established at 10 microT--300 mT. Magnetic Resonance in Medicine. 53: 9-14. PMID 15690496 DOI: 10.1002/mrm.20316  1
2005 Mößle M, Myers WR, Lee SK, Kelso N, Hatridge M, Pines A, Clarke J. SQUID-detected in vivo MRI at microtesla magnetic fields Ieee Transactions On Applied Superconductivity. 15: 757-760. DOI: 10.1109/TASC.2005.850043  1
2005 Lanting TM, Cho HM, Clarke J, Dobbs MA, Holzapfel WL, Lee AT, Lueker M, Richards PL, Smith AD, Spieler HG. Frequency-domain SQUID multiplexing of transition-edge sensors Ieee Transactions On Applied Superconductivity. 15: 567-570. DOI: 10.1109/TASC.2005.849921  1
2005 Plourde BLT, Robertson TL, Reichardt PA, Hime T, Linzen S, Wu CE, Clarke J. Flux qubits and readout device with two independent flux lines Physical Review B - Condensed Matter and Materials Physics. 72. DOI: 10.1103/PhysRevB.72.060506  1
2005 Robertson TL, Plourde BLT, Hime T, Linzen S, Reichardt PA, Wilhelm FK, Clarke J. Superconducting quantum interference device with frequency-dependent damping: Readout of flux qubits Physical Review B - Condensed Matter and Materials Physics. 72. DOI: 10.1103/PhysRevB.72.024513  1
2005 Lanting TM, Cho HM, Clarke J, Holzapfel WL, Lee AT, Lueker M, Richards PL, Dobbs MA, Spieler H, Smith A. Frequency-domain multiplexed readout of transition-edge sensor arrays with a superconducting quantum interference device Applied Physics Letters. 86: 1-3. DOI: 10.1063/1.1884746  1
2005 Mück M, Korn M, Mugford CGA, Kycia JB, Clarke J. Measurements of 1/f noise in Josephson junctions at zero voltage: Implications for decoherence in superconducting quantum bits Applied Physics Letters. 86: 012510-1-012510-3. DOI: 10.1063/1.1846157  1
2005 Braginski AI, Clarke J. Introduction The Squid Handbook. 1: 1-28. DOI: 10.1002/3527603646.ch1  1
2005 Braginski AI, Clarke J. Preface The Squid Handbook. 1: xi-xiii. DOI: 10.1002/3527603646  1
2004 Chen J, Thomson PD, Nolan V, Clarke J. Age and sex dependent variations in the normal magnetocardiogram compared with changes associated with ischemia. Annals of Biomedical Engineering. 32: 1088-99. PMID 15446505 DOI: 10.1114/B:ABME.0000036645.35013.ad  1
2004 McDermott R, Lee S, ten Haken B, Trabesinger AH, Pines A, Clarke J. Microtesla MRI with a superconducting quantum interference device. Proceedings of the National Academy of Sciences of the United States of America. 101: 7857-61. PMID 15141077 DOI: 10.1073/pnas.0402382101  1
2004 Grossman HL, Myers WR, Vreeland VJ, Bruehl R, Alper MD, Bertozzi CR, Clarke J. Detection of bacteria in suspension by using a superconducting quantum interference device. Proceedings of the National Academy of Sciences of the United States of America. 101: 129-34. PMID 14688406 DOI: 10.1073/pnas.0307128101  1
2004 Kleiner R, Koelle D, Ludwig F, Clarke J. Superconducting quantum interference devices: State of the art and applications Proceedings of the Ieee. 92: 1534-1548. DOI: 10.1109/JPROC.2004.833655  1
2004 Plourde BLT, Zhang J, Whaley KB, Wilhelm FK, Robertson TL, Hime T, Linzen S, Reichardt PA, Wu CE, Clarke J. Entangling flux qubits with a bipolar dynamic inductance Physical Review B - Condensed Matter and Materials Physics. 70: 140501-1-140501-4. DOI: 10.1103/PhysRevB.70.140501  1
2004 Van Harlingen DJ, Robertson TL, Plourde BLT, Reichardt PA, Crane TA, Clarke J. Decoherence in Josephson-junction qubits due to critical-current fluctuations Physical Review B - Condensed Matter and Materials Physics. 70: 064517-1-064517-13. DOI: 10.1103/PhysRevB.70.064517  1
2004 Wellstood FC, Urbina C, Clarke J. Flicker (1/f) noise in the critical current of Josephson junctions at 0.09-4.2 K Applied Physics Letters. 85: 5296-5298. DOI: 10.1063/1.1826236  1
2004 Linzen S, Robertson TL, Hime T, Plourde BLT, Reichardt PA, Clarke J. Low-noise computer-controlled current source for quantum coherence experiments Review of Scientific Instruments. 75: 2541-2544. DOI: 10.1063/1.1771499  1
2004 McDermott R, Kelso N, Lee SK, Mößle M, Mück M, Myers W, ten Haken B, Seton HC, Trabesinger AH, Pines A, Clarke J. SQUID-detected magnetic resonance imaging in microtesla magnetic fields Journal of Low Temperature Physics. 135: 793-821. DOI: 10.1023/B:JOLT.0000029519.09286.c5  1
2004 Trabesinger AH, McDermott R, Lee S, Mück M, Clarke J, Pines A. SQUID-Detected Liquid State NMR in Microtesla Fields Journal of Physical Chemistry A. 108: 957-963. DOI: 10.1021/jp035181g  1
2004 Lanting TM, Cho HM, Clarke J, Dobbs M, Lee AT, Lueker M, Richards PL, Smith AD, Spieler HG. Frequency domain multiplexing for bolometer arrays Nuclear Instruments and Methods in Physics Research, Section a: Accelerators, Spectrometers, Detectors and Associated Equipment. 520: 548-550. DOI: 10.1016/j.nima.2003.11.311  1
2003 Clarke J. Flux qubit completes the hat trick Science. 299: 1850-1851. DOI: 10.1126/science.1083001  1
2003 Ullom JN, Cunningham MF, Miyazaki T, Labov SE, Clarke J, Lanting TM, Lee AT, Richards PL, Yoon J, Spieler H. A frequency-domain read-out technique for large microcalorimeter arrays demonstrated using high-resolution γ-ray sensors Ieee Transactions On Applied Superconductivity. 13: 643-648. DOI: 10.1109/TASC.2003.813981  1
2003 Lanting TM, Cho HM, Clarke J, Dobbs M, Lee AT, Richards PL, Smith AD, Spieler HG. A frequency-domain SQUID multiplexer for arrays of transition-edge superconducting sensors Ieee Transactions On Applied Superconductivity. 13: 626-629. DOI: 10.1109/TASC.2003.813973  1
2003 Bradley R, Clarke J, Kinion D, Rosenberg LJ, Van Bibber K, Matsuki S, Mück M, Sikivie P. Microwave cavity searches for dark-matter axions Reviews of Modern Physics. 75: 777-817. DOI: 10.1103/RevModPhys.75.777  1
2003 Watanabe Y, Kang SH, Chan JW, Morris JW, Clarke J. High-Tc superconducting quantum interference device observation of heat-affected zone in a spot-welded Fe-Cr-Ni system Applied Physics Letters. 83: 1878-1880. DOI: 10.1063/1.1599039  1
2003 Mück M, Welzel C, Clarke J. Superconducting quantum interference device amplifiers at gigahertz frequencies Applied Physics Letters. 82: 3266-3268. DOI: 10.1063/1.1572970  1
2003 Clarke J. Vortices and hearts Nature. 425: 133-136. DOI: 10.1038/425133a  1
2003 Clarke J, Pape I, Normile P, Tanner BK. X-ray scattering from uniform and patterned indium tin oxide thin films Journal of Physics D: Applied Physics. 36: A209-A213.  1
2002 Wong-Foy A, Saxena S, Moulé AJ, Bitter HM, Seeley JA, McDermott R, Clarke J, Pines A. Laser-polarized (129)Xe NMR and MRI at ultralow magnetic fields. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 157: 235-41. PMID 12323142 DOI: 10.1006/jmre.2002.2592  1
2002 McDermott R, Trabesinger AH, Muck M, Hahn EL, Pines A, Clarke J. Liquid-state NMR and scalar couplings in microtesla magnetic fields. Science (New York, N.Y.). 295: 2247-9. PMID 11910105 DOI: 10.1126/science.1069280  1
2002 Lanting TM, Cho HM, Clarke J, Dobbs M, Lee AT, Richards PL, Spieler HG, Smith A. Frequency-domain multiplexing for large-scale bolometer arrays Proceedings of Spie - the International Society For Optical Engineering. 4855: 172-181. DOI: 10.1117/12.459672  1
2002 Lee S, Myers WR, Grossman HL, Cho HM, Chemla YR, Clarke J. Magnetic gradiometer based on a high-transition temperature superconducting quantum interference device for improved sensitivity of a biosensor Applied Physics Letters. 81: 3094-3096. DOI: 10.1063/1.1515122  1
2002 Cunningham MF, Ullom JN, Miyazaki T, Labov SE, Clarke J, Lanting TM, Lee AT, Richards PL, Yoon J, Spieler H. High-resolution operation of frequency-multiplexed transition-edge photon sensors Applied Physics Letters. 81: 159-161. DOI: 10.1063/1.1489486  1
2002 Clarke J, Robertson TL, Plourde BLT, García-Martinez A, Reichardt PA, Van Harlingen DJ, Chesca B, Kleiner R, Makhlin Y, Schön G, Shnirman A, Wilhelm FK. Quiet readout of superconducting flux states Physica Scripta T. 102: 173-177.  1
2001 Saxena S, Wong-Foy A, Moule AJ, Seeley JA, McDermott R, Clarke J, Pines A. Resolution of (129)Xe chemical shifts at ultralow magnetic field. Journal of the American Chemical Society. 123: 8133-4. PMID 11506577 DOI: 10.1021/ja011064s  1
2001 Kycia JB, Chen J, Therrien R, Kurdak C, Campman KL, Gossard AC, Clarke J. Effects of dissipation on a superconducting single electron transistor. Physical Review Letters. 87: 017002. PMID 11461486 DOI: 10.1103/PhysRevLett.87.017002  1
2001 Grossman HL, Lee S, Myers W, Chemla YR, Poon Y, Cho HM, McDermott R, Stevens R, Alper MD, Clarke J. Superconducting quantum interference device detection of magnetically tagged microorganisms Proceedings of Spie - the International Society For Optical Engineering. 4576: 122-125. DOI: 10.1117/12.456943  1
2001 Zhang Y, Kinion D, Chen J, Clarke J, Hinks DG, Crabtree GW. MgB2 tunnel junctions and 19 K low-noise dc superconducting quantum interference devices Applied Physics Letters. 79: 3995-3997. DOI: 10.1063/1.1424465  1
2001 Asztalos S, Daw E, Peng H, Rosenberg LJ, Hagmann C, Kinion D, Stoeffl W, Van Bibber K, Sikivie P, Sullivan NS, Tanner DB, Nezrick F, Turner MS, Moltz DM, Powell J, ... ... Clarke J, et al. Large-scale microwave cavity search for dark-matter axions Physical Review D. 64.  1
2000 Chemla YR, Grossman HL, Poon Y, McDermott R, Stevens R, Alper MD, Clarke J. Ultrasensitive magnetic biosensor for homogeneous immunoassay. Proceedings of the National Academy of Sciences of the United States of America. 97: 14268-72. PMID 11121032 DOI: 10.1073/pnas.97.26.14268  1
1999 Chemla YR, Grossman HL, Lee TS, Clarke J, Adamkiewicz M, Buchanan BB. A new study of bacterial motion: superconducting quantum interference device microscopy of magnetotactic bacteria. Biophysical Journal. 76: 3323-30. PMID 10354458 DOI: 10.1016/S0006-3495(99)77485-0  1
1994 Wellstood FC, Urbina C, Clarke J. Hot-electron effects in metals. Physical Review. B, Condensed Matter. 49: 5942-5955. PMID 10011570 DOI: 10.1103/PhysRevB.49.5942  1
1993 Wellstood FC, Ferrari MJ, Kingston JJ, Shaw TJ, Clarke J. SQUID milliattovoltometry of YBa2Cu3O7-x thin films: Dissipation in low magnetic fields. Physical Review Letters. 70: 89-92. PMID 10053265 DOI: 10.1103/PhysRevLett.70.89  1
1992 Hürlimann MD, Pennington CH, Fan NQ, Clarke J, Pines A, Hahn EL. Pulsed Fourier-transform NQR of 14N with a dc SQUID. Physical Review Letters. 69: 684-687. PMID 10047004  0.76
1992 Cleland AN, Schmidt JM, Clarke J. Influence of the environment on the Coulomb blockade in submicrometer normal-metal tunnel junctions. Physical Review. B, Condensed Matter. 45: 2950-2961. PMID 10001845 DOI: 10.1103/PhysRevB.45.2950  1
1991 Ferrari MJ, Wellstood FC, Kingston JJ, Clarke J. Suppression of magnetic-flux noise in YBa2Cu3O7-x by a supercurrent. Physical Review Letters. 67: 1346-1349. PMID 10044122 DOI: 10.1103/PhysRevLett.67.1346  1
1991 Johnson M, Ferrari MJ, Wellstood FC, Clarke J. Magnetic flux noise in high-Tc superconductors. Physical Review Letters. 66: 1799. PMID 10043311 DOI: 10.1103/PhysRevLett.66.1799  1
1991 Schmidt JM, Cleland AN, Clarke J. Resonant tunneling in small current-biased Josephson junctions. Physical Review. B, Condensed Matter. 43: 229-238. PMID 9996207 DOI: 10.1103/PhysRevB.43.229  1
1990 Ferrari MJ, Johnson M, Wellstood FC, Clarke J, Mitzi D, Rosenthal PA, Eom CB, Geballe TH, Kapitulnik A, Beasley MR. Ferrari et al. reply. Physical Review Letters. 65: 279. PMID 10042606 DOI: 10.1103/PhysRevLett.65.279  1
1990 Cleland AN, Schmidt JM, Clarke J. Charge fluctuations in small-capacitance junctions. Physical Review Letters. 64: 1565-1568. PMID 10041430 DOI: 10.1103/PhysRevLett.64.1565  1
1990 Ferrari MJ, Johnson M, Wellstood FC, Clarke J, Mitzi D, Rosenthal PA, Eom CB, Geballe TH, Kapitulnik A, Beasley MR. Distribution of flux-pinning energies in YBa2Cu3O7- delta and Bi2Sr2CaCu2O8+ delta from flux noise. Physical Review Letters. 64: 72-75. PMID 10041276 DOI: 10.1103/PhysRevLett.64.72  1
1990 Johnson M, Ferrari MJ, Wellstood FC, Clarke J, Beasley MR, Inam A, Wu XD, Nazar L, Venkatesan T. Random telegraph signals in high-temperature superconductors. Physical Review. B, Condensed Matter. 42: 10792-10795. PMID 9995351 DOI: 10.1103/PhysRevB.42.10792  1
1989 Devoret MH, Martinis JM, Clarke J. Devoret, Martinis, and Clarke reply. Physical Review Letters. 63: 212. PMID 10040809 DOI: 10.1103/PhysRevLett.63.212  1
1988 Clarke J, Cleland AN, Devoret MH, Esteve D, Martinis JM. Quantum mechanics of a macroscopic variable: the phase difference of a josephson junction. Science (New York, N.Y.). 239: 992-7. PMID 17815701 DOI: 10.1126/science.239.4843.992  1
1988 Cleland AN, Martinis JM, Clarke J. Measurement of the effect of moderate dissipation on macroscopic quantum tunneling. Physical Review. B, Condensed Matter. 37: 5950-5953. PMID 9943818 DOI: 10.1103/PhysRevB.37.5950  1
1987 Devoret MH, Esteve D, Martinis JM, Cleland A, Clarke J. Resonant activation of a Brownian particle out of a potential well: Microwave-enhanced escape from the zero-voltage state of a Josephson junction. Physical Review. B, Condensed Matter. 36: 58-73. PMID 9942028 DOI: 10.1103/PhysRevB.36.58  1
1987 Martinis JM, Devoret MH, Clarke J. Experimental tests for the quantum behavior of a macroscopic degree of freedom: The phase difference across a Josephson junction. Physical Review. B, Condensed Matter. 35: 4682-4698. PMID 9940640 DOI: 10.1103/PhysRevB.35.4682  1
1985 Devoret MH, Martinis JM, Clarke J. Measurements of macroscopic quantum tunneling out of the zero-voltage state of a current-biased Josephson junction. Physical Review Letters. 55: 1908-1911. PMID 10031958 DOI: 10.1103/PhysRevLett.55.1908  1
1985 Martinis JM, Devoret MH, Clarke J. Energy-level quantization in the zero-voltage state of a current-biased Josephson junction. Physical Review Letters. 55: 1543-1546. PMID 10031852 DOI: 10.1103/PhysRevLett.55.1543  1
1985 Miracky RF, Devoret MH, Clarke J. Deterministic hopping in a Josephson circuit described by a one-dimensional mapping. Physical Review. A. 31: 2509-2519. PMID 9895786 DOI: 10.1103/PhysRevA.31.2509  1
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