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Julie A. Huber - Publications

Affiliations: 
Ecology and Evolutionary Biology Brown University, Providence, RI 
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61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hauer MA, Breusing C, Trembath-Reichert E, Huber JA, Beinart RA. Geography, not lifestyle, explains the population structure of free-living and host-associated deep-sea hydrothermal vent snail symbionts. Microbiome. 11: 106. PMID 37189129 DOI: 10.1186/s40168-023-01493-2  0.311
2023 Zhou Z, Tran PQ, Adams AM, Kieft K, Breier JA, Fortunato CS, Sheik CS, Huber JA, Li M, Dick GJ, Anantharaman K. Sulfur cycling connects microbiomes and biogeochemistry in deep-sea hydrothermal plumes. The Isme Journal. PMID 37179442 DOI: 10.1038/s41396-023-01421-0  0.389
2022 Hu SK, Smith AR, Anderson RE, Sylva SP, Setzer M, Steadmon M, Frank KL, Chan EW, Lim DSS, German CR, Breier JA, Lang SQ, Butterfield DA, Fortunato CS, Seewald JS, ... Huber JA, et al. Globally-distributed microbial eukaryotes exhibit endemism at deep-sea hydrothermal vents. Molecular Ecology. PMID 36302092 DOI: 10.1111/mec.16745  0.737
2022 Anderson RE, Graham ED, Huber JA, Tully BJ. Microbial Populations Are Shaped by Dispersal and Recombination in a Low Biomass Subseafloor Habitat. Mbio. e0035422. PMID 35913164 DOI: 10.1128/mbio.00354-22  0.704
2022 D'Angelo T, Goordial J, Poulton NJ, Seyler L, Huber JA, Stepanauskas R, Orcutt BN. Oceanic Crustal Fluid Single Cell Genomics Complements Metagenomic and Metatranscriptomic Surveys With Orders of Magnitude Less Sample Volume. Frontiers in Microbiology. 12: 738231. PMID 35140689 DOI: 10.3389/fmicb.2021.738231  0.321
2021 Hoffert M, Anderson RE, Reveillaud J, Murphy LG, Stepanauskas R, Huber JA. Genomic Variation Influences Fitness in Marine Hydrothermal Systems. Frontiers in Microbiology. 12: 714920. PMID 34489903 DOI: 10.3389/fmicb.2021.714920  0.722
2021 Hu SK, Herrera EL, Smith AR, Pachiadaki MG, Edgcomb VP, Sylva SP, Chan EW, Seewald JS, German CR, Huber JA. Protistan grazing impacts microbial communities and carbon cycling at deep-sea hydrothermal vents. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34266956 DOI: 10.1073/pnas.2102674118  0.379
2021 Thomas E, Anderson RE, Li V, Rogan LJ, Huber JA. Diverse Viruses in Deep-Sea Hydrothermal Vent Fluids Have Restricted Dispersal across Ocean Basins. Msystems. e0006821. PMID 34156293 DOI: 10.1128/mSystems.00068-21  0.698
2021 Fortunato CS, Butterfield DA, Larson B, Lawrence-Slavas N, Algar CK, Zeigler Allen L, Holden JF, Proskurowski G, Reddington E, Stewart LC, Topçuoğlu BD, Vallino JJ, Huber JA. Seafloor incubation experiment with deep-sea hydrothermal vent fluid reveals effect of pressure and lag time on autotrophic microbial communities. Applied and Environmental Microbiology. PMID 33608294 DOI: 10.1128/AEM.00078-21  0.395
2020 Seyler LM, Trembath-Reichert E, Tully BJ, Huber JA. Time-series transcriptomics from cold, oxic subseafloor crustal fluids reveals a motile, mixotrophic microbial community. The Isme Journal. PMID 33273721 DOI: 10.1038/s41396-020-00843-4  0.441
2020 Fincker M, Huber JA, Orphan VJ, Rappé MS, Teske A, Spormann AM. Metabolic strategies of marine subseafloor Chloroflexi inferred from genome reconstructions. Environmental Microbiology. PMID 32372496 DOI: 10.1111/1462-2920.15061  0.368
2020 Meyer JL, Jaekel U, Tully BJ, Glazer BT, Wheat CG, Lin HT, Hsieh CC, Cowen JP, Hulme SM, Girguis PR, Huber JA. Author Correction: A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge. Scientific Reports. 10: 6691. PMID 32300242 DOI: 10.1038/S41598-020-63127-Z  0.389
2020 Moulana A, Anderson RE, Fortunato CS, Huber JA. Selection Is a Significant Driver of Gene Gain and Loss in the Pangenome of the Bacterial Genus in Geographically Distinct Deep-Sea Hydrothermal Vents. Msystems. 5. PMID 32291353 DOI: 10.1128/mSystems.00673-19  0.696
2020 Orcutt BN, Bradley JA, Brazelton WJ, Estes ER, Goordial JM, Huber JA, Jones RM, Mahmoudi N, Marlow JJ, Murdock S, Pachiadaki M. Impacts of deep‐sea mining on microbial ecosystem services Limnology and Oceanography. 65: 1489-1510. DOI: 10.1002/Lno.11403  0.631
2019 Galambos D, Anderson RE, Reveillaud J, Huber JA. Genome-resolved metagenomics and metatranscriptomics reveal niche differentiation in functionally redundant microbial communities at deep-sea hydrothermal vents. Environmental Microbiology. PMID 31573126 DOI: 10.1111/1462-2920.14806  0.743
2019 Trembath-Reichert E, Butterfield DA, Huber JA. Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa. The Isme Journal. PMID 31073213 DOI: 10.1038/S41396-019-0431-Y  0.483
2019 Stewart LC, Algar CK, Fortunato CS, Larson BI, Vallino JJ, Huber JA, Butterfield DA, Holden JF. Fluid geochemistry, local hydrology, and metabolic activity define methanogen community size and composition in deep-sea hydrothermal vents. The Isme Journal. PMID 30842565 DOI: 10.1038/S41396-019-0382-3  0.417
2018 Angermeyer A, Crosby SC, Huber JA. Salt marsh sediment bacterial communities maintain original population structure after transplantation across a latitudinal gradient. Peerj. 6: e4735. PMID 29736349 DOI: 10.7717/Peerj.4735  0.46
2018 Louca S, Polz MF, Mazel F, Albright MBN, Huber JA, O'Connor MI, Ackermann M, Hahn AS, Srivastava DS, Crowe SA, Doebeli M, Parfrey LW. Function and functional redundancy in microbial systems. Nature Ecology & Evolution. PMID 29662222 DOI: 10.1038/S41559-018-0519-1  0.375
2018 Reveillaud J, Anderson R, Reves-Sohn S, Cavanaugh C, Huber JA. Metagenomic investigation of vestimentiferan tubeworm endosymbionts from Mid-Cayman Rise reveals new insights into metabolism and diversity. Microbiome. 6: 19. PMID 29374496 DOI: 10.1186/S40168-018-0411-X  0.702
2018 Vallino JJ, Huber JA. Using Maximum Entropy Production to Describe Microbial Biogeochemistry Over Time and Space in a Meromictic Pond Frontiers in Environmental Science. 6. DOI: 10.3389/Fenvs.2018.00100  0.377
2018 Shah Walter SR, Jaekel U, Osterholz H, Fisher AT, Huber JA, Pearson A, Dittmar T, Girguis PR. Microbial decomposition of marine dissolved organic matter in cool oceanic crust Nature Geoscience. 11: 334-339. DOI: 10.1038/S41561-018-0109-5  0.393
2018 Van Dover C, Arnaud-Haond S, Gianni M, Helmreich S, Huber J, Jaeckel A, Metaxas A, Pendleton L, Petersen S, Ramirez-Llodra E, Steinberg P, Tunnicliffe V, Yamamoto H. Scientific rationale and international obligations for protection of active hydrothermal vent ecosystems from deep-sea mining Marine Policy. 90: 20-28. DOI: 10.1016/J.Marpol.2018.01.020  0.344
2017 Fortunato CS, Larson B, Butterfield DA, Huber JA. Spatially distinct, temporally stable microbial populations mediate biogeochemical cycling at and below the seafloor in hydrothermal vent fluids. Environmental Microbiology. PMID 29205750 DOI: 10.1111/1462-2920.14011  0.521
2017 Tully BJ, Wheat CG, Glazer BT, Huber JA. A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer. The Isme Journal. PMID 29099490 DOI: 10.1038/Ismej.2017.187  0.505
2017 Anderson RE, Reveillaud J, Reddington E, Delmont TO, Eren AM, McDermott JM, Seewald JS, Huber JA. Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents. Nature Communications. 8: 1114. PMID 29066755 DOI: 10.1038/S41467-017-01228-6  0.708
2017 Mackey KRM, Hunter-Cevera K, Britten GL, Murphy LG, Sogin ML, Huber JA. Seasonal Succession and Spatial Patterns of Synechococcus Microdiversity in a Salt Marsh Estuary Revealed through 16S rRNA Gene Oligotyping. Frontiers in Microbiology. 8: 1496. PMID 28848514 DOI: 10.3389/Fmicb.2017.01496  0.467
2017 Sylvan JB, Wankel SD, LaRowe DE, Charoenpong CN, Huber JA, Moyer CL, Edwards KJ. Evidence for microbial mediation of subseafloor nitrogen redox processes at Loihi Seamount, Hawaii Geochimica Et Cosmochimica Acta. 198: 131-150. DOI: 10.1016/J.Gca.2016.10.029  0.411
2016 Topçuoğlu BD, Stewart LC, Morrison HG, Butterfield DA, Huber JA, Holden JF. Hydrogen Limitation and Syntrophic Growth among Natural Assemblages of Thermophilic Methanogens at Deep-sea Hydrothermal Vents. Frontiers in Microbiology. 7: 1240. PMID 27547206 DOI: 10.3389/Fmicb.2016.01240  0.326
2016 Meyer JL, Jaekel U, Tully BJ, Glazer BT, Wheat CG, Lin HT, Hsieh CC, Cowen JP, Hulme SM, Girguis PR, Huber JA. A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge. Scientific Reports. 6: 22541. PMID 26935537 DOI: 10.1038/Srep22541  0.502
2016 Fortunato CS, Huber JA. Coupled RNA-SIP and metatranscriptomics of active chemolithoautotrophic communities at a deep-sea hydrothermal vent. The Isme Journal. PMID 26872039 DOI: 10.1038/Ismej.2015.258  0.408
2015 Reveillaud J, Reddington E, McDermott J, Algar C, Meyer JL, Sylva S, Seewald J, German CR, Huber JA. Subseafloor microbial communities in hydrogen-rich vent fluids from hydrothermal systems along the Mid-Cayman Rise. Environmental Microbiology. PMID 26663423 DOI: 10.1111/1462-2920.13173  0.451
2015 Huber JA. MICROBIAL ECOLOGY. Making methane down deep. Science (New York, N.Y.). 349: 376-7. PMID 26206916 DOI: 10.1126/Science.Aac6673  0.429
2015 Angermeyer A, Crosby SC, Huber JA. Decoupled distance-decay patterns between dsrA and 16S rRNA genes among salt marsh sulfate-reducing bacteria. Environmental Microbiology. PMID 25727503 DOI: 10.1111/1462-2920.12821  0.417
2014 Reed DC, Algar CK, Huber JA, Dick GJ. Gene-centric approach to integrating environmental genomics and biogeochemical models. Proceedings of the National Academy of Sciences of the United States of America. 111: 1879-84. PMID 24449851 DOI: 10.1073/Pnas.1313713111  0.45
2014 Reveillaud J, Maignien L, Murat Eren A, Huber JA, Apprill A, Sogin ML, Vanreusel A. Host-specificity among abundant and rare taxa in the sponge microbiome. The Isme Journal. 8: 1198-209. PMID 24401862 DOI: 10.1038/Ismej.2013.227  0.451
2014 Meyer JL, Huber JA. Strain-level genomic variation in natural populations of Lebetimonas from an erupting deep-sea volcano. The Isme Journal. 8: 867-80. PMID 24257443 DOI: 10.1038/Ismej.2013.206  0.438
2014 Orcutt BN, LaRowe DE, Lloyd KG, Mills H, Orsi W, Reese BK, Sauvage J, Huber JA, Amend J. IODP deep biosphere research workshop report - A synthesis of recent investigations, and discussion of new research questions and drilling targets Scientific Drilling. 61-66. DOI: 10.5194/Sd-17-61-2014  0.3
2013 Akerman NH, Butterfield DA, Huber JA. Phylogenetic diversity and functional gene patterns of sulfur-oxidizing subseafloor Epsilonproteobacteria in diffuse hydrothermal vent fluids. Frontiers in Microbiology. 4: 185. PMID 23847608 DOI: 10.3389/Fmicb.2013.00185  0.49
2013 Meyer JL, Akerman NH, Proskurowski G, Huber JA. Microbiological characterization of post-eruption "snowblower" vents at Axial Seamount, Juan de Fuca Ridge. Frontiers in Microbiology. 4: 153. PMID 23785361 DOI: 10.3389/Fmicb.2013.00153  0.496
2013 Merkel AY, Huber JA, Chernyh NA, Bonch-Osmolovskaya EA, Lebedinsky AV. Detection of putatively thermophilic anaerobic methanotrophs in diffuse hydrothermal vent fluids. Applied and Environmental Microbiology. 79: 915-23. PMID 23183981 DOI: 10.1128/Aem.03034-12  0.408
2013 Huber JA, Holden JF. Modeling the Impact of Diffuse Vent Microorganisms Along Mid-Ocean Ridges and Flanks Magma to Microbe: Modeling Hydrothermal Processes At Oceanic Spreading Centers. 215-231. DOI: 10.1029/178GM11  0.31
2013 Butterfield DA, Roe KK, Lilley MD, Huber JA, Baross JA, Embley RW, Massoth GJ. Mixing, Reaction and Microbial Activity in the Sub‐Seafloor Revealed by Temporal and Spatial Variation in Diffuse Flow Vents at Axial Volcano Geophysical Monograph. 144: 269-289. DOI: 10.1029/144Gm17  0.717
2013 Bennett SA, Coleman M, Huber JA, Reddington E, Kinsey JC, McIntyre C, Seewald JS, German CR. Trophic regions of a hydrothermal plume dispersing away from an ultramafic-hosted vent-system: Von Damm vent-site, Mid-Cayman Rise Geochemistry, Geophysics, Geosystems. 14: 317-327. DOI: 10.1002/Ggge.20063  0.421
2012 Ver Eecke HC, Butterfield DA, Huber JA, Lilley MD, Olson EJ, Roe KK, Evans LJ, Merkel AY, Cantin HV, Holden JF. Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents. Proceedings of the National Academy of Sciences of the United States of America. 109: 13674-9. PMID 22869718 DOI: 10.1073/Pnas.1206632109  0.368
2012 Breier JA, Gomez-Ibanez D, Reddington E, Huber JA, Emerson D. A precision multi-sampler for deep-sea hydrothermal microbial mat studies Deep-Sea Research Part I: Oceanographic Research Papers. 70: 83-90. DOI: 10.1016/j.dsr.2012.10.006  0.331
2011 Resing JA, Rubin KH, Embley RW, Lupton JE, Baker ET, Dziak RP, Baumberger T, Lilley MD, Huber JA, Shank TM, Butterfield DA, Clague DA, Keller NS, Merle SG, Buck NJ, et al. Active submarine eruption of boninite in the northeastern Lau Basin Nature Geoscience. 4: 799-806. DOI: 10.1038/Ngeo1275  0.386
2010 Schrenk MO, Huber JA, Edwards KJ. Microbial provinces in the subseafloor. Annual Review of Marine Science. 2: 279-304. PMID 21141666 DOI: 10.1146/Annurev-Marine-120308-081000  0.719
2010 German CR, Bowen A, Coleman ML, Honig DL, Huber JA, Jakuba MV, Kinsey JC, Kurz MD, Leroy S, McDermott JM, de Lépinay BM, Nakamura K, Seewald JS, Smith JL, Sylva SP, et al. Diverse styles of submarine venting on the ultraslow spreading Mid-Cayman Rise. Proceedings of the National Academy of Sciences of the United States of America. 107: 14020-5. PMID 20660317 DOI: 10.1073/Pnas.1009205107  0.446
2010 Huber JA, Cantin HV, Huse SM, Welch DB, Sogin ML, Butterfield DA. Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts. Fems Microbiology Ecology. 73: 538-49. PMID 20533947 DOI: 10.1111/J.1574-6941.2010.00910.X  0.506
2009 Huber JA, Morrison HG, Huse SM, Neal PR, Sogin ML, Mark Welch DB. Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure. Environmental Microbiology. 11: 1292-302. PMID 19220394 DOI: 10.1111/J.1462-2920.2008.01857.X  0.446
2008 Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Welch DM, Relman DA, Sogin ML. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. Plos Genetics. 4: e1000255. PMID 19023400 DOI: 10.1371/Journal.Pgen.1000255  0.409
2007 Huber JA, Mark Welch DB, Morrison HG, Huse SM, Neal PR, Butterfield DA, Sogin ML. Microbial population structures in the deep marine biosphere. Science (New York, N.Y.). 318: 97-100. PMID 17916733 DOI: 10.1126/Science.1146689  0.47
2007 Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biology. 8: R143. PMID 17659080 DOI: 10.1186/Gb-2007-8-7-R143  0.318
2006 Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, Arrieta JM, Herndl GJ. Microbial diversity in the deep sea and the underexplored "rare biosphere". Proceedings of the National Academy of Sciences of the United States of America. 103: 12115-20. PMID 16880384 DOI: 10.1073/Pnas.0605127103  0.512
2006 Huber JA, Johnson HP, Butterfield DA, Baross JA. Microbial life in ridge flank crustal fluids. Environmental Microbiology. 8: 88-99. PMID 16343325 DOI: 10.1111/J.1462-2920.2005.00872.X  0.767
2006 Huber JA, Butterfield DA, Baross JA. Diversity and distribution of subseafloor Thermococcales populations in diffuse hydrothermal vents at an active deep-sea volcano in the northeast Pacific Ocean Journal of Geophysical Research: Biogeosciences. 111. DOI: 10.1029/2005Jg000097  0.737
2005 Mehta MP, Huber JA, Baross JA. Incidence of novel and potentially archaeal nitrogenase genes in the deep Northeast Pacific Ocean. Environmental Microbiology. 7: 1525-34. PMID 16156726 DOI: 10.1111/J.1462-2920.2005.00836.X  0.757
2003 Huber JA, Butterfield DA, Baross JA. Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption. Fems Microbiology Ecology. 43: 393-409. PMID 19719671 DOI: 10.1111/J.1574-6941.2003.Tb01080.X  0.757
2003 Johnson HP, Baross J, Bjorklund T, Brazelton W, Huber J, Johnson M, Pruis M, Lang S, McCroskey F, Mehta M, Bowen A, Howland J, Butterfield D, Martin W, Roe K, et al. Probing for life in the ocean crust with the LEXEN program Eos. 84: 109+112.  0.699
2002 Huber JA, Butterfield DA, Baross JA. Temporal changes in archaeal diversity and chemistry in a mid-ocean ridge subseafloor habitat. Applied and Environmental Microbiology. 68: 1585-94. PMID 11916672 DOI: 10.1128/Aem.68.4.1585-1594.2002  0.763
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