| Year |
Citation |
Score |
| 2020 |
Lourenço RF, Saurabh S, Herrmann J, Wakatsuki S, Shapiro L. The Nucleoid-Associated Protein GapR Uses Conserved Structural Elements To Oligomerize and Bind DNA. Mbio. 11. PMID 32518183 DOI: 10.1128/Mbio.00448-20 |
0.315 |
|
| 2020 |
Velez G, Sun YJ, Khan S, Yang J, Herrmann J, Chemudupati T, MacLaren RE, Gakhar L, Wakatsuki S, Bassuk AG, Mahajan VB. Structural Insights into the Unique Activation Mechanisms of a Non-classical Calpain and Its Disease-Causing Variants. Cell Reports. 30: 881-892.e5. PMID 31968260 DOI: 10.1016/J.Celrep.2019.12.077 |
0.33 |
|
| 2019 |
Herrmann J, Li PN, Jabbarpour F, Chan ACK, Rajkovic I, Matsui T, Shapiro L, Smit J, Weiss TM, Murphy MEP, Wakatsuki S. A bacterial surface layer protein exploits multistep crystallization for rapid self-assembly. Proceedings of the National Academy of Sciences of the United States of America. PMID 31848245 DOI: 10.1073/Pnas.1909798116 |
0.371 |
|
| 2019 |
Herhaus L, van den Bedem H, Tang S, Maslennikov I, Wakatsuki S, Dikic I, Rahighi S. Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains. Journal of Molecular Biology. PMID 31247202 DOI: 10.2210/Pdb6N5M/Pdb |
0.384 |
|
| 2019 |
Stoffel GMM, Saez DA, DeMirci H, Vögeli B, Rao Y, Zarzycki J, Yoshikuni Y, Wakatsuki S, Vöhringer-Martinez E, Erb TJ. Four amino acids define the CO binding pocket of enoyl-CoA carboxylases/reductases. Proceedings of the National Academy of Sciences of the United States of America. PMID 31243147 DOI: 10.2210/Pdb6Owe/Pdb |
0.305 |
|
| 2019 |
Comerci CJ, Herrmann J, Yoon J, Jabbarpour F, Zhou X, Nomellini JF, Smit J, Shapiro L, Wakatsuki S, Moerner WE. Topologically-guided continuous protein crystallization controls bacterial surface layer self-assembly. Nature Communications. 10: 2731. PMID 31227690 DOI: 10.1038/S41467-019-10650-X |
0.303 |
|
| 2019 |
I Ciftci H, G Sierra R, Yoon CH, Su Z, Tateishi H, Koga R, Kotaro K, Yumoto F, Senda T, Liang M, Wakatsuki S, Otsuka M, Fujita M, DeMirci H. Serial Femtosecond X-Ray Diffraction of HIV-1 Gag MA-IP6 Microcrystals at Ambient Temperature. International Journal of Molecular Sciences. 20. PMID 30987231 DOI: 10.3390/Ijms20071675 |
0.355 |
|
| 2019 |
Herrmann J, Comerci CJ, Jabbarpour F, Shapiro L, Moerner WE, Wakatsuki S. Multi-Step 2D Protein Crystallization via Structural Changes within an Ordered Lattice Biophysical Journal. 116: 194a. DOI: 10.1016/J.Bpj.2018.11.1077 |
0.331 |
|
| 2018 |
Dao EH, Poitevin F, Sierra RG, Gati C, Rao Y, Ciftci HI, Akşit F, McGurk A, Obrinski T, Mgbam P, Hayes B, DE Lichtenberg C, Pardo-Avila F, Corsepius N, Zhang L, ... ... Wakatsuki S, et al. Structure of the 30S ribosomal decoding complex at ambient temperature. Rna (New York, N.Y.). PMID 30139800 DOI: 10.1261/Rna.067660.118 |
0.35 |
|
| 2018 |
Rahighi S, Wakatsuki S. Structural insights into the mechanism of ubiquitination by the linear ubiquitin chain assembly complex (LUBAC) Acta Crystallographica Section a Foundations and Advances. 74: a469-a469. DOI: 10.1107/S0108767318095314 |
0.303 |
|
| 2017 |
Rogov VV, Stolz A, Ravicahandran AC, Rios-Szwed DO, Suzuki H, Kniss A, Löhr F, Wakatsuki S, Dötsch V, Dikic I, Dobson RC, McEwan DG. Structural and functional analysis of the GABARAP interaction motif (GIM). Embo Reports. PMID 28655748 DOI: 10.15252/Embr.201643587 |
0.321 |
|
| 2017 |
Rogov VV, Suzuki H, Marinković M, Lang V, Kato R, Kawasaki M, Buljubašić M, Šprung M, Rogova N, Wakatsuki S, Hamacher-Brady A, Dötsch V, Dikic I, Brady NR, Novak I. Phosphorylation of the mitochondrial autophagy receptor Nix enhances its interaction with LC3 proteins. Scientific Reports. 7: 1131. PMID 28442745 DOI: 10.1038/S41598-017-01258-6 |
0.327 |
|
| 2017 |
Yoon CH, DeMirci H, Sierra RG, Dao EH, Ahmadi R, Aksit F, Aquila AL, Batyuk A, Ciftci H, Guillet S, Hayes MJ, Hayes B, Lane TJ, Liang M, Lundström U, ... ... Wakatsuki S, et al. Se-SAD serial femtosecond crystallography datasets from selenobiotinyl-streptavidin. Scientific Data. 4: 170055. PMID 28440794 DOI: 10.1038/Sdata.2017.55 |
0.327 |
|
| 2016 |
Boutet S, Cohen A, Wakatsuki S. The New Macromolecular Femtosecond Crystallography (MFX) Instrument at LCLS. Synchrotron Radiation News. 29: 23-28. PMID 28736484 DOI: 10.1080/08940886.2016.1124681 |
0.339 |
|
| 2016 |
Hunter MS, Yoon CH, DeMirci H, Sierra RG, Dao EH, Ahmadi R, Aksit F, Aquila AL, Ciftci H, Guillet S, Hayes MJ, Lane TJ, Liang M, Lundström U, Koglin JE, ... ... Wakatsuki S, et al. Selenium single-wavelength anomalous diffraction de novo phasing using an X-ray-free electron laser. Nature Communications. 7: 13388. PMID 27811937 DOI: 10.1038/Ncomms13388 |
0.323 |
|
| 2016 |
Suzuki N, Rohaim A, Kato R, Dikic I, Wakatsuki S, Kawasaki M. A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1. The Febs Journal. PMID 27062441 DOI: 10.1111/Febs.13734 |
0.379 |
|
| 2016 |
Rahighi S, Braunstein I, Ternette N, Kessler B, Kawasaki M, Kato R, Matsui T, Weiss TM, Stanhill A, Wakatsuki S. Selective Binding of AIRAPL Tandem UIMs to Lys48-Linked Tri-Ubiquitin Chains. Structure (London, England : 1993). PMID 26876100 DOI: 10.1016/J.Str.2015.12.017 |
0.36 |
|
| 2016 |
Gaponov Y, Matsugaki N, Sasajima K, Igarashi N, Wakatsuki S. Some Aspects of Crystal Centering During X-ray High-throughput Protein Crystallography Experiment Physics Procedia. 84: 315-320. DOI: 10.1016/J.Phpro.2016.11.053 |
0.325 |
|
| 2015 |
Aquila A, Barty A, Bostedt C, Boutet S, Carini G, dePonte D, Drell P, Doniach S, Downing KH, Earnest T, Elmlund H, Elser V, Gühr M, Hajdu J, Hastings J, ... ... Wakatsuki S, et al. The linac coherent light source single particle imaging road map. Structural Dynamics (Melville, N.Y.). 2: 041701. PMID 26798801 DOI: 10.1063/1.4918726 |
0.678 |
|
| 2015 |
Takahashi T, Kojima K, Zhang W, Sasaki K, Ito M, Suzuki H, Kawasaki M, Wakatsuki S, Takahara T, Shibata H, Maki M. Structural analysis of the complex between penta-EF-hand ALG-2 protein and Sec31A peptide reveals a novel target recognition mechanism of ALG-2. International Journal of Molecular Sciences. 16: 3677-99. PMID 25667979 DOI: 10.3390/Ijms16023677 |
0.373 |
|
| 2015 |
McEwan DG, Popovic D, Gubas A, Terawaki S, Suzuki H, Stadel D, Coxon FP, Miranda de Stegmann D, Bhogaraju S, Maddi K, Kirchof A, Gatti E, Helfrich MH, Wakatsuki S, Behrends C, et al. PLEKHM1 regulates autophagosome-lysosome fusion through HOPS complex and LC3/GABARAP proteins. Molecular Cell. 57: 39-54. PMID 25498145 DOI: 10.1016/J.Molcel.2014.11.006 |
0.329 |
|
| 2014 |
Lutman AA, Decker FJ, Arthur J, Chollet M, Feng Y, Hastings J, Huang Z, Lemke H, Nuhn HD, Marinelli A, Turner JL, Wakatsuki S, Welch J, Zhu D. Demonstration of single-crystal self-seeded two-color x-ray free-electron lasers. Physical Review Letters. 113: 254801. PMID 25554887 DOI: 10.1103/Physrevlett.113.254801 |
0.305 |
|
| 2014 |
Cohen AE, Soltis SM, González A, Aguila L, Alonso-Mori R, Barnes CO, Baxter EL, Brehmer W, Brewster AS, Brunger AT, Calero G, Chang JF, Chollet M, Ehrensberger P, Eriksson TL, ... ... Wakatsuki S, et al. Goniometer-based femtosecond crystallography with X-ray free electron lasers. Proceedings of the National Academy of Sciences of the United States of America. 111: 17122-7. PMID 25362050 DOI: 10.1073/Pnas.1418733111 |
0.357 |
|
| 2014 |
Suzuki T, Makyio H, Ando H, Komura N, Menjo M, Yamada Y, Imamura A, Ishida H, Wakatsuki S, Kato R, Kiso M. Expanded potential of seleno-carbohydrates as a molecular tool for X-ray structural determination of a carbohydrate-protein complex with single/multi-wavelength anomalous dispersion phasing. Bioorganic & Medicinal Chemistry. 22: 2090-101. PMID 24631362 DOI: 10.1016/J.Bmc.2014.02.023 |
0.389 |
|
| 2014 |
Fujita H, Rahighi S, Akita M, Kato R, Sasaki Y, Wakatsuki S, Iwai K. Mechanism underlying IκB kinase activation mediated by the linear ubiquitin chain assembly complex. Molecular and Cellular Biology. 34: 1322-35. PMID 24469399 DOI: 10.1128/Mcb.01538-13 |
0.3 |
|
| 2014 |
Suzuki H, Tabata K, Morita E, Kawasaki M, Kato R, Dobson RC, Yoshimori T, Wakatsuki S. Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism. Structure (London, England : 1993). 22: 47-58. PMID 24290141 DOI: 10.1016/J.Str.2013.09.023 |
0.379 |
|
| 2014 |
Wakatsuki S. New opportunities in structural biology with XFEL: from sources to structures Acta Crystallographica Section A. 70. DOI: 10.1107/S205327331409980X |
0.318 |
|
| 2013 |
Yamada Y, Chavas LM, Igarashi N, Hiraki M, Wakatsuki S, Matsugaki N. Improvements toward highly accurate diffraction experiments at the macromolecular micro-crystallography beamline BL-17A. Journal of Synchrotron Radiation. 20: 938-42. PMID 24121344 DOI: 10.1107/S0909049513022875 |
0.317 |
|
| 2013 |
Hiraki M, Yamada Y, Chavas LM, Wakatsuki S, Matsugaki N. Improvement of an automated protein crystal exchange system PAM for high-throughput data collection. Journal of Synchrotron Radiation. 20: 890-3. PMID 24121334 DOI: 10.1107/S0909049513021067 |
0.307 |
|
| 2013 |
Liao JH, Ihara K, Kuo CI, Huang KF, Wakatsuki S, Wu SH, Chang CI. Structures of an ATP-independent Lon-like protease and its complexes with covalent inhibitors. Acta Crystallographica. Section D, Biological Crystallography. 69: 1395-402. PMID 23897463 DOI: 10.1107/S0907444913008214 |
0.331 |
|
| 2013 |
Rogov VV, Suzuki H, Fiskin E, Wild P, Kniss A, Rozenknop A, Kato R, Kawasaki M, McEwan DG, Löhr F, Güntert P, Dikic I, Wakatsuki S, Dötsch V. Structural basis for phosphorylation-triggered autophagic clearance of Salmonella. The Biochemical Journal. 454: 459-66. PMID 23805866 DOI: 10.1042/Bj20121907 |
0.317 |
|
| 2013 |
Uejima T, Ihara K, Sunada M, Kawasaki M, Ueda T, Kato R, Nakano A, Wakatsuki S. Direct metal recognition by guanine nucleotide-exchange factor in the initial step of the exchange reaction. Acta Crystallographica. Section D, Biological Crystallography. 69: 345-51. PMID 23519409 DOI: 10.1107/S0907444912047294 |
0.312 |
|
| 2013 |
Makyio H, Takeuchi T, Tamura M, Nishiyama K, Takahashi H, Natsugari H, Arata Y, Kasai K, Yamada Y, Wakatsuki S, Kato R. Structural basis of preferential binding of fucose-containing saccharide by the Caenorhabditis elegans galectin LEC-6. Glycobiology. 23: 797-805. PMID 23481096 DOI: 10.1093/Glycob/Cwt017 |
0.371 |
|
| 2012 |
Ihara K, Fujiwara N, Yamaguchi Y, Torigoe H, Wakatsuki S, Taniguchi N, Suzuki K. Structural switching of Cu,Zn-superoxide dismutases at loop VI: insights from the crystal structure of 2-mercaptoethanol-modified enzyme. Bioscience Reports. 32: 539-48. PMID 22804629 DOI: 10.1042/Bsr20120029 |
0.342 |
|
| 2012 |
Nakamura K, Man Z, Xie Y, Hanai A, Makyio H, Kawasaki M, Kato R, Shin HW, Nakayama K, Wakatsuki S. Structural basis for membrane binding specificity of the Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-2 determined by Arl1 GTPase. The Journal of Biological Chemistry. 287: 25478-89. PMID 22679020 DOI: 10.1074/Jbc.M112.365783 |
0.33 |
|
| 2012 |
Ru H, Zhao L, Ding W, Jiao L, Shaw N, Liang W, Zhang L, Hung LW, Matsugaki N, Wakatsuki S, Liu ZJ. S-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS. Acta Crystallographica. Section D, Biological Crystallography. 68: 521-30. PMID 22525750 DOI: 10.1107/S0907444912004490 |
0.305 |
|
| 2012 |
Makyio H, Ohgi M, Takei T, Takahashi S, Takatsu H, Katoh Y, Hanai A, Ueda T, Kanaho Y, Xie Y, Shin HW, Kamikubo H, Kataoka M, Kawasaki M, Kato R, ... Wakatsuki S, et al. Structural basis for Arf6-MKLP1 complex formation on the Flemming body responsible for cytokinesis. The Embo Journal. 31: 2590-603. PMID 22522702 DOI: 10.1038/Emboj.2012.89 |
0.353 |
|
| 2012 |
Okazaki S, Kato R, Uchida Y, Taguchi T, Arai H, Wakatsuki S. Structural basis of the strict phospholipid binding specificity of the pleckstrin homology domain of human evectin-2. Acta Crystallographica. Section D, Biological Crystallography. 68: 117-23. PMID 22281740 DOI: 10.1107/S0907444911051626 |
0.381 |
|
| 2012 |
Rohaim A, Kawasaki M, Kato R, Dikic I, Wakatsuki S. Structure of a compact conformation of linear diubiquitin. Acta Crystallographica. Section D, Biological Crystallography. 68: 102-8. PMID 22281738 DOI: 10.1107/S0907444911051195 |
0.361 |
|
| 2012 |
Yamada Y, Matsugaki N, Chavas LMG, Hiraki M, Shimizu N, Igarashi N, Wakatsuki S. Structural biology beamlines at the Photon Factory Acta Crystallographica Section a Foundations of Crystallography. 68: s148-s148. DOI: 10.1107/S0108767312097152 |
0.306 |
|
| 2012 |
Fujihashi M, Hiraki M, Ueno G, Baba S, Murakami H, Suzuki M, Watanabe N, Tanaka I, Nakagawa A, Wakatsuki S, Yamamoto M, Miki K. Crystal sample pins and a storage cassette system compatible with the protein crystallography beamlines at both the Photon Factory and SPring-8 Journal of Applied Crystallography. 45: 1156-1161. DOI: 10.1107/S002188981203734X |
0.338 |
|
| 2011 |
Uchida Y, Hasegawa J, Chinnapen D, Inoue T, Okazaki S, Kato R, Wakatsuki S, Misaki R, Koike M, Uchiyama Y, Iemura S, Natsume T, Kuwahara R, Nakagawa T, Nishikawa K, et al. Intracellular phosphatidylserine is essential for retrograde membrane traffic through endosomes. Proceedings of the National Academy of Sciences of the United States of America. 108: 15846-51. PMID 21911378 DOI: 10.1073/Pnas.1109101108 |
0.305 |
|
| 2011 |
Chavas LM, Yamada Y, Hiraki M, Igarashi N, Matsugaki N, Wakatsuki S. UV LED lighting for automated crystal centring. Journal of Synchrotron Radiation. 18: 11-5. PMID 21169682 DOI: 10.1107/S0909049510028670 |
0.329 |
|
| 2011 |
Ikeda F, Rahighi S, Wakatsuki S, Dikic I. Selective binding of linear ubiquitin chains to NEMO in NF-kappaB activation. Advances in Experimental Medicine and Biology. 691: 107-14. PMID 21153314 DOI: 10.1007/978-1-4419-6612-4_11 |
0.311 |
|
| 2011 |
Igarashi N, Matsugaki N, Yamada Y, Chavas LG, Hiraki M, Shimizu N, Mori T, Wakatsuki S. Structural biology and SAXS beamlines at the Photon Factory Acta Crystallographica Section a Foundations of Crystallography. 67: C803-C803. DOI: 10.1107/S0108767311079669 |
0.308 |
|
| 2010 |
Suzuki N, Hiraki M, Yamada Y, Matsugaki N, Igarashi N, Kato R, Dikic I, Drew D, Iwata S, Wakatsuki S, Kawasaki M. Crystallization of small proteins assisted by green fluorescent protein. Acta Crystallographica. Section D, Biological Crystallography. 66: 1059-66. PMID 20944239 DOI: 10.1107/S0907444910032944 |
0.537 |
|
| 2010 |
Uejima T, Ihara K, Goh T, Ito E, Sunada M, Ueda T, Nakano A, Wakatsuki S. GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5·Vps9 system. The Journal of Biological Chemistry. 285: 36689-97. PMID 20833725 DOI: 10.1074/Jbc.M110.152132 |
0.325 |
|
| 2010 |
Satoh T, Sakata E, Yamamoto S, Yamaguchi Y, Sumiyoshi A, Wakatsuki S, Kato K. Crystal structure of cyclic Lys48-linked tetraubiquitin. Biochemical and Biophysical Research Communications. 400: 329-33. PMID 20728431 DOI: 10.1016/J.Bbrc.2010.08.057 |
0.359 |
|
| 2010 |
Inuzuka T, Suzuki H, Kawasaki M, Shibata H, Wakatsuki S, Maki M. Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition. Bmc Structural Biology. 10: 25. PMID 20691033 DOI: 10.1186/1472-6807-10-25 |
0.379 |
|
| 2010 |
Wakatsuki S, Yamada Y, Chavas LM, Igarashi N, Kawasaki M, Kato R, Hiraki M, Matsugaki N. [Advancement of synchrotron radiation protein crystallography in the targeted protein research program: beamline developments at the photon factory]. Yakugaku Zasshi : Journal of the Pharmaceutical Society of Japan. 130: 631-40. PMID 20460857 DOI: 10.1248/Yakushi.130.631 |
0.361 |
|
| 2010 |
Sakata E, Satoh T, Yamamoto S, Yamaguchi Y, Yagi-Utsumi M, Kurimoto E, Tanaka K, Wakatsuki S, Kato K. Crystal structure of UbcH5b~ubiquitin intermediate: insight into the formation of the self-assembled E2~Ub conjugates. Structure (London, England : 1993). 18: 138-47. PMID 20152160 DOI: 10.1016/J.Str.2009.11.007 |
0.329 |
|
| 2010 |
Nishio M, Kamiya Y, Mizushima T, Wakatsuki S, Sasakawa H, Yamamoto K, Uchiyama S, Noda M, McKay AR, Fukui K, Hauri HP, Kato K. Structural basis for the cooperative interplay between the two causative gene products of combined factor V and factor VIII deficiency. Proceedings of the National Academy of Sciences of the United States of America. 107: 4034-9. PMID 20142513 DOI: 10.1073/Pnas.0908526107 |
0.369 |
|
| 2010 |
Kudo N, Kumagai K, Matsubara R, Kobayashi S, Hanada K, Wakatsuki S, Kato R. Crystal structures of the CERT START domain with inhibitors provide insights into the mechanism of ceramide transfer. Journal of Molecular Biology. 396: 245-51. PMID 20036255 DOI: 10.1016/J.Jmb.2009.12.029 |
0.402 |
|
| 2009 |
Dikic I, Wakatsuki S, Walters KJ. Ubiquitin-binding domains - from structures to functions. Nature Reviews. Molecular Cell Biology. 10: 659-71. PMID 19773779 DOI: 10.1038/Nrm2767 |
0.381 |
|
| 2009 |
Rahighi S, Ikeda F, Kawasaki M, Akutsu M, Suzuki N, Kato R, Kensche T, Uejima T, Bloor S, Komander D, Randow F, Wakatsuki S, Dikic I. Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation. Cell. 136: 1098-109. PMID 19303852 DOI: 10.1016/J.Cell.2009.03.007 |
0.33 |
|
| 2009 |
Suzuki H, Kawasaki M, Inuzuka T, Okumura M, Kakiuchi T, Shibata H, Wakatsuki S, Maki M. The mechanism of Ca2+-dependent recognition of Alix by ALG-2: insights from X-ray crystal structures. Biochemical Society Transactions. 37: 190-4. PMID 19143629 DOI: 10.1042/Bst0370190 |
0.367 |
|
| 2009 |
Nagae M, Nishi N, Murata T, Usui T, Nakamura T, Wakatsuki S, Kato R. Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain. Glycobiology. 19: 112-7. PMID 18977853 DOI: 10.1093/Glycob/Cwn121 |
0.316 |
|
| 2008 |
Suzuki H, Kawasaki M, Kakiuchi T, Shibata H, Wakatsuki S, Maki M. Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 64: 974-7. PMID 18997320 DOI: 10.1107/S1744309108030297 |
0.35 |
|
| 2008 |
Suzuki H, Kawasaki M, Inuzuka T, Okumura M, Kakiuchi T, Shibata H, Wakatsuki S, Maki M. Structural basis for Ca2+ -dependent formation of ALG-2/Alix peptide complex: Ca2+/EF3-driven arginine switch mechanism. Structure (London, England : 1993). 16: 1562-73. PMID 18940611 DOI: 10.1016/J.Str.2008.07.012 |
0.346 |
|
| 2008 |
Chavas LM, Ihara K, Kawasaki M, Torii S, Uejima T, Kato R, Izumi T, Wakatsuki S. Elucidation of Rab27 recruitment by its effectors: structure of Rab27a bound to Exophilin4/Slp2-a. Structure (London, England : 1993). 16: 1468-77. PMID 18940603 DOI: 10.1016/J.Str.2008.07.015 |
0.376 |
|
| 2008 |
Inoue M, Kamikubo H, Kataoka M, Kato R, Yoshimori T, Wakatsuki S, Kawasaki M. Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B. Traffic (Copenhagen, Denmark). 9: 2180-9. PMID 18796009 DOI: 10.1111/J.1600-0854.2008.00831.X |
0.338 |
|
| 2008 |
Chavas LM, Ihara K, Kawasaki M, Kato R, Izumi T, Wakatsuki S. Purification, crystallization and preliminary X-ray crystallographic analysis of Rab27a GTPase in complex with exophilin4/Slp2-a effector. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 64: 599-601. PMID 18607085 DOI: 10.1107/S1744309108009251 |
0.389 |
|
| 2008 |
Murakami K, Stewart M, Nozawa K, Tomii K, Kudou N, Igarashi N, Shirakihara Y, Wakatsuki S, Yasunaga T, Wakabayashi T. Structural basis for tropomyosin overlap in thin (actin) filaments and the generation of a molecular swivel by troponin-T. Proceedings of the National Academy of Sciences of the United States of America. 105: 7200-5. PMID 18483193 DOI: 10.1073/Pnas.0801950105 |
0.318 |
|
| 2008 |
Miyoshi T, Igarashi N, Matsugaki N, Yamada Y, Hirano K, Hyodo K, Tanioka K, Egami N, Namba M, Kubota M, Kawai T, Wakatsuki S. Development of an X-ray HARP-FEA detector system for high-throughput protein crystallography. Journal of Synchrotron Radiation. 15: 281-4. PMID 18421159 DOI: 10.1107/S0909049508006584 |
0.327 |
|
| 2008 |
Yousef MS, Kamikubo H, Kataoka M, Kato R, Wakatsuki S. Miranda cargo-binding domain forms an elongated coiled-coil homodimer in solution: implications for asymmetric cell division in Drosophila. Protein Science : a Publication of the Protein Society. 17: 908-17. PMID 18369190 DOI: 10.1110/Ps.083431408 |
0.368 |
|
| 2008 |
Kudo N, Kumagai K, Tomishige N, Yamaji T, Wakatsuki S, Nishijima M, Hanada K, Kato R. Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide. Proceedings of the National Academy of Sciences of the United States of America. 105: 488-93. PMID 18184806 DOI: 10.1073/Pnas.0709191105 |
0.368 |
|
| 2008 |
Nagae M, Nishi N, Nakamura-Tsuruta S, Hirabayashi J, Wakatsuki S, Kato R. Structural analysis of the human galectin-9 N-terminal carbohydrate recognition domain reveals unexpected properties that differ from the mouse orthologue. Journal of Molecular Biology. 375: 119-35. PMID 18005988 DOI: 10.1016/J.Jmb.2007.09.060 |
0.398 |
|
| 2008 |
Yamada Y, Igarashi N, Matsugaki N, Hiraki M, Kawasaki M, Kato R, Wakatsuki S. 2P-031 Structure determination of a native protein crystal by S-SAD phasing with synchrotron radiation(The 46th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 48: S79. DOI: 10.2142/Biophys.48.S79_6 |
0.332 |
|
| 2008 |
Yamada Y, Igarashi N, Matsugaki N, Hiraki M, Kawasaki M, Kato R, Wakatsuki S. 1S6-4 Structure determination of a native protein crystal by S-SAD phasing with synchrotron radiation(1S6 Cutting edge of protein crystallography with synchrotron radiation,The 46th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 48: S5. DOI: 10.2142/Biophys.48.S5_6 |
0.315 |
|
| 2008 |
Igarashi N, Matsugaki N, Yamada Y, Hiraki M, Wakatsuki S. Beamline developments for structural biology at the Photon Factory Acta Crystallographica Section a Foundations of Crystallography. 64: C176-C176. DOI: 10.1107/S0108767308094397 |
0.3 |
|
| 2008 |
Suzuki N, Kawasaki M, Kato R, Dikic I, Wakatsuki S. Crystallographic study of the ubiquitin-binding zinc finger domain of human polymerase eta Acta Crystallographica Section a Foundations of Crystallography. 64: C325-C325. DOI: 10.1107/S0108767308089599 |
0.307 |
|
| 2007 |
Das M, Kobayashi M, Yamada Y, Sreeramulu S, Ramakrishnan C, Wakatsuki S, Kato R, Varadarajan R. Design of disulfide-linked thioredoxin dimers and multimers through analysis of crystal contacts. Journal of Molecular Biology. 372: 1278-92. PMID 17727880 DOI: 10.1016/J.Jmb.2007.07.033 |
0.358 |
|
| 2007 |
Satoh T, Cowieson NP, Hakamata W, Ideo H, Fukushima K, Kurihara M, Kato R, Yamashita K, Wakatsuki S. Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36. The Journal of Biological Chemistry. 282: 28246-55. PMID 17652092 DOI: 10.1074/Jbc.M703064200 |
0.362 |
|
| 2007 |
Chavas LM, Torii S, Kamikubo H, Kawasaki M, Ihara K, Kato R, Kataoka M, Izumi T, Wakatsuki S. Structure of the small GTPase Rab27b shows an unexpected swapped dimer. Acta Crystallographica. Section D, Biological Crystallography. 63: 769-79. PMID 17582168 DOI: 10.1107/S0907444907019725 |
0.416 |
|
| 2007 |
Inoue M, Shiba T, Ihara K, Yamada Y, Hirano S, Kamikubo H, Kataoka M, Kawasaki M, Kato R, Nakayama K, Wakatsuki S. Molecular basis for autoregulatory interaction between GAE domain and hinge region of GGA1. Traffic (Copenhagen, Denmark). 8: 904-13. PMID 17506864 DOI: 10.1111/J.1600-0854.2007.00577.X |
0.356 |
|
| 2007 |
Nagae M, Tsuchiya A, Katayama T, Yamamoto K, Wakatsuki S, Kato R. Structural basis of the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase from Bifidobacterium bifidum. The Journal of Biological Chemistry. 282: 18497-509. PMID 17459873 DOI: 10.1074/Jbc.M702246200 |
0.348 |
|
| 2006 |
Hirano S, Suzuki N, Slagsvold T, Kawasaki M, Trambaiolo D, Kato R, Stenmark H, Wakatsuki S. Structural basis of ubiquitin recognition by mammalian Eap45 GLUE domain. Nature Structural & Molecular Biology. 13: 1031-2. PMID 17057714 DOI: 10.1038/Nsmb1163 |
0.369 |
|
| 2006 |
Shiba T, Koga H, Shin HW, Kawasaki M, Kato R, Nakayama K, Wakatsuki S. Structural basis for Rab11-dependent membrane recruitment of a family of Rab11-interacting protein 3 (FIP3)/Arfophilin-1. Proceedings of the National Academy of Sciences of the United States of America. 103: 15416-21. PMID 17030804 DOI: 10.1073/Pnas.0605357103 |
0.368 |
|
| 2006 |
Yogosawa S, Kawasaki M, Wakatsuki S, Kominami E, Shiba Y, Nakayama K, Kohsaka S, Akazawa C. Monoubiquitylation of GGA3 by hVPS18 regulates its ubiquitin-binding ability. Biochemical and Biophysical Research Communications. 350: 82-90. PMID 16996030 DOI: 10.1016/J.Bbrc.2006.09.013 |
0.353 |
|
| 2006 |
Nagae M, Nishi N, Murata T, Usui T, Nakamura T, Wakatsuki S, Kato R. Crystal structure of the galectin-9 N-terminal carbohydrate recognition domain from Mus musculus reveals the basic mechanism of carbohydrate recognition. The Journal of Biological Chemistry. 281: 35884-93. PMID 16990264 DOI: 10.1074/Jbc.M606648200 |
0.383 |
|
| 2006 |
Hiraki M, Kato R, Nagai M, Satoh T, Hirano S, Ihara K, Kudo N, Nagae M, Kobayashi M, Inoue M, Uejima T, Oda S, Chavas LM, Akutsu M, Yamada Y, ... ... Wakatsuki S, et al. Development of an automated large-scale protein-crystallization and monitoring system for high-throughput protein-structure analyses. Acta Crystallographica. Section D, Biological Crystallography. 62: 1058-65. PMID 16929107 DOI: 10.1107/S0907444906023821 |
0.361 |
|
| 2006 |
Shiba T, Kakuda S, Ishiguro M, Morita I, Oka S, Kawasaki T, Wakatsuki S, Kato R. Crystal structure of GlcAT-S, a human glucuronyltransferase, involved in the biosynthesis of the HNK-1 carbohydrate epitope. Proteins. 65: 499-508. PMID 16897771 DOI: 10.1002/Prot.21118 |
0.346 |
|
| 2006 |
Kubota T, Shiba T, Sugioka S, Furukawa S, Sawaki H, Kato R, Wakatsuki S, Narimatsu H. Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10). Journal of Molecular Biology. 359: 708-27. PMID 16650853 DOI: 10.1016/J.Jmb.2006.03.061 |
0.332 |
|
| 2006 |
Hirano S, Kawasaki M, Ura H, Kato R, Raiborg C, Stenmark H, Wakatsuki S. Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting. Nature Structural & Molecular Biology. 13: 272-7. PMID 16462748 DOI: 10.1038/Nsmb1051 |
0.367 |
|
| 2006 |
Satoh T, Sato K, Kanoh A, Yamashita K, Yamada Y, Igarashi N, Kato R, Nakano A, Wakatsuki S. Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. The Journal of Biological Chemistry. 281: 10410-9. PMID 16439369 DOI: 10.1074/Jbc.M512258200 |
0.304 |
|
| 2005 |
Kawasaki M, Nakayama K, Wakatsuki S. Membrane recruitment of effector proteins by Arf and Rab GTPases. Current Opinion in Structural Biology. 15: 681-9. PMID 16289847 DOI: 10.1016/J.Sbi.2005.10.015 |
0.322 |
|
| 2005 |
Akutsu M, Kawasaki M, Katoh Y, Shiba T, Yamaguchi Y, Kato R, Kato K, Nakayama K, Wakatsuki S. Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain. Febs Letters. 579: 5385-91. PMID 16199040 DOI: 10.1016/J.Febslet.2005.08.076 |
0.38 |
|
| 2005 |
Temiakov D, Zenkin N, Vassylyeva MN, Perederina A, Tahirov TH, Kashkina E, Savkina M, Zorov S, Nikiforov V, Igarashi N, Matsugaki N, Wakatsuki S, Severinov K, Vassylyev DG. Structural basis of transcription inhibition by antibiotic streptolydigin. Molecular Cell. 19: 655-66. PMID 16167380 DOI: 10.1016/J.Molcel.2005.07.020 |
0.36 |
|
| 2005 |
Chang CI, Ihara K, Chelliah Y, Mengin-Lecreulx D, Wakatsuki S, Deisenhofer J. Structure of the ectodomain of Drosophila peptidoglycan-recognition protein LCa suggests a molecular mechanism for pattern recognition. Proceedings of the National Academy of Sciences of the United States of America. 102: 10279-84. PMID 16006509 DOI: 10.1073/Pnas.0504547102 |
0.363 |
|
| 2005 |
Kawasaki M, Shiba T, Shiba Y, Yamaguchi Y, Matsugaki N, Igarashi N, Suzuki M, Kato R, Kato K, Nakayama K, Wakatsuki S. Molecular mechanism of ubiquitin recognition by GGA3 GAT domain. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 10: 639-54. PMID 15966896 DOI: 10.1107/S0108767305092433 |
0.36 |
|
| 2005 |
Slagsvold T, Aasland R, Hirano S, Bache KG, Raiborg C, Trambaiolo D, Wakatsuki S, Stenmark H. Eap45 in mammalian ESCRT-II binds ubiquitin via a phosphoinositide-interacting GLUE domain. The Journal of Biological Chemistry. 280: 19600-6. PMID 15755741 DOI: 10.1074/Jbc.M501510200 |
0.356 |
|
| 2005 |
Chavas LM, Tringali C, Fusi P, Venerando B, Tettamanti G, Kato R, Monti E, Wakatsuki S. Crystal structure of the human cytosolic sialidase Neu2. Evidence for the dynamic nature of substrate recognition. The Journal of Biological Chemistry. 280: 469-75. PMID 15501818 DOI: 10.1074/Jbc.M411506200 |
0.376 |
|
| 2005 |
Kamikubo H, Kawasaki M, Kato R, Nakayama K, Wakatsuki S, Kataoka M. 2P045 Structural inspection of the auto-inhibition mechanism of GGA proteins Seibutsu Butsuri. 45: S131. DOI: 10.2142/Biophys.45.S131_1 |
0.314 |
|
| 2005 |
Hiraki M, Kato R, Yamada Y, Matsugaki N, Igarashi N, Wakatsuki S. High-throughput protein crystallization Acta Crystallographica Section a Foundations of Crystallography. 61: c149-c150. DOI: 10.1107/S0108767305093633 |
0.339 |
|
| 2005 |
Satoh T, Sato K, Kanoh A, Yamashita K, Kato R, Nakano A, Wakatsuki S. Crystal structures of the carbohydrate recognition domain of Emp46p and Emp47p Acta Crystallographica Section a Foundations of Crystallography. 61: c177-c177. DOI: 10.1107/S0108767305092445 |
0.365 |
|
| 2004 |
Shiba T, Kametaka S, Kawasaki M, Shibata M, Waguri S, Uchiyama Y, Wakatsuki S. Insights into the phosphoregulation of beta-secretase sorting signal by the VHS domain of GGA1. Traffic (Copenhagen, Denmark). 5: 437-48. PMID 15117318 DOI: 10.1111/J.1600-0854.2004.00188.X |
0.34 |
|
| 2004 |
Kakuda S, Shiba T, Ishiguro M, Tagawa H, Oka S, Kajihara Y, Kawasaki T, Wakatsuki S, Kato R. Structural basis for acceptor substrate recognition of a human glucuronyltransferase, GlcAT-P, an enzyme critical in the biosynthesis of the carbohydrate epitope HNK-1. The Journal of Biological Chemistry. 279: 22693-703. PMID 14993226 DOI: 10.1074/Jbc.M400622200 |
0.357 |
|
| 2004 |
Shiba Y, Katoh Y, Shiba T, Yoshino K, Takatsu H, Kobayashi H, Shin HW, Wakatsuki S, Nakayama K. GAT (GGA and Tom1) domain responsible for ubiquitin binding and ubiquitination. The Journal of Biological Chemistry. 279: 7105-11. PMID 14660606 DOI: 10.1074/Jbc.M311702200 |
0.355 |
|
| 2004 |
Murasaki Y, Kamikubo H, Kawasaki M, Kato R, Nakayama K, Wakatsuki S, Kataoka M. 1P020 The role of the VHS domain in the dimer formation of GGA proteins Seibutsu Butsuri. 44: S34. DOI: 10.2142/Biophys.44.S34_4 |
0.313 |
|
| 2003 |
Nakayama K, Wakatsuki S. The structure and function of GGAs, the traffic controllers at the TGN sorting crossroads. Cell Structure and Function. 28: 431-42. PMID 14745135 DOI: 10.1247/Csf.28.431 |
0.368 |
|
| 2003 |
Shiba T, Kawasaki M, Takatsu H, Nogi T, Matsugaki N, Igarashi N, Suzuki M, Kato R, Nakayama K, Wakatsuki S. Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport. Nature Structural Biology. 10: 386-93. PMID 12679809 DOI: 10.1038/Nsb920 |
0.383 |
|
| 2002 |
Nogi T, Shiba Y, Kawasaki M, Shiba T, Matsugaki N, Igarashi N, Suzuki M, Kato R, Takatsu H, Nakayama K, Wakatsuki S. Structural basis for the accessory protein recruitment by the gamma-adaptin ear domain. Nature Structural Biology. 9: 527-31. PMID 12042876 DOI: 10.1038/Nsb808 |
0.379 |
|
| 2002 |
Shiba T, Takatsu H, Nogi T, Matsugaki N, Kawasaki M, Igarashi N, Suzuki M, Kato R, Earnest T, Nakayama K, Wakatsuki S. Structural basis for recognition of acidic-cluster dileucine sequence by GGA1. Nature. 415: 937-41. PMID 11859376 DOI: 10.1038/415937A |
0.347 |
|
| 2001 |
Dumon-Seignovert L, Matsumuto T, Monaco-Malbet S, Tomizaki T, Sato M, Sato K, Nakano A, Wakatsuki S. Purification, crystallization and preliminary X-ray diffraction analysis of the yeast Sec12δp protein, a guanine nucleotide-exchange factor involved in vesicle transport Acta Crystallographica Section D: Biological Crystallography. 57: 893-895. PMID 11375521 DOI: 10.1107/S0907444901005686 |
0.363 |
|
| 2000 |
Yao M, Ose T, Sugimoto H, Horiuchi A, Nakagawa A, Wakatsuki S, Yokoi D, Murakami T, Honma M, Tanaka I. Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus Journal of Biological Chemistry. 275: 34557-34565. PMID 10938279 DOI: 10.1074/Jbc.M004681200 |
0.335 |
|
| 1999 |
Yamashita A, Kato H, Wakatsuki S, Tomizaki T, Nakatsu T, Nakajima K, Hashimoto T, Yamada Y, Oda J. Structure of tropinone reductase-II complexed with NADP+ and pseudotropine at 1.9 Å resolution: Implication for stereospecific substrate binding and catalysis Biochemistry. 38: 7630-7637. PMID 10387002 DOI: 10.1021/Bi9825044 |
0.341 |
|
| 1998 |
Wakatsuki S, Belrhali H, Mitchell EP, Burmeister WP, McSweeney SM, Kahn R, Bourgeois D, Yao M, Tomizaki T, Theveneau P. ID14 'Quadriga', a Beamline for Protein Crystallography at the ESRF. Journal of Synchrotron Radiation. 5: 215-21. PMID 15263481 DOI: 10.1107/S0909049597018785 |
0.326 |
|
| 1998 |
Tanaka I, Nakagawa A, Hosaka H, Wakatsuki S, Mueller F, Brimacombe R. Matching the crystallographic structure of ribosomal protein S7 to a three-dimensional model of the 16S ribosomal RNA Rna. 4: 542-550. PMID 9582096 DOI: 10.1017/S1355838298972004 |
0.353 |
|
| 1998 |
Vassylyev DG, Takeda S, Wakatsuki S, Maeda K, Maeda Y. Crystal structure of troponin C in complex with troponin I fragment at 2.3-Å resolution Proceedings of the National Academy of Sciences of the United States of America. 95: 4847-4852. PMID 9560191 DOI: 10.1073/Pnas.95.9.4847 |
0.356 |
|
| 1997 |
Clifton IJ, Duke EM, Wakatsuki S, Ren Z. [Evaluation of Laue diffraction patterns. Methods in Enzymology. 277: 448-67. PMID 18488319 DOI: 10.1016/S0076-6879(97)77025-3 |
0.334 |
|
| 1997 |
Hosaka H, Nakagawa A, Tanaka I, Harada N, Sano K, Kimura M, Yao M, Wakatsuki S. Ribosomal protein S7: a new RNA-binding motif with structural similarities to a DNA architectural factor. Structure (London, England : 1993). 5: 1199-208. PMID 9331423 DOI: 10.1016/S0969-2126(97)00270-0 |
0.35 |
|
| 1997 |
Saijo Y, Takeda S, Scherer A, Kobayashi T, Maéda Y, Taniguchi H, Yao M, Wakatsuki S. Production, crystallization, and preliminary X-ray analysis of rabbit skeletal muscle troponin complex consisting of troponin C and fragment (1-47) of troponin I. Protein Science : a Publication of the Protein Society. 6: 916-8. PMID 9098903 DOI: 10.1002/Pro.5560060420 |
0.34 |
|
| 1996 |
Miegel A, Sano KI, Yamamoto K, Maeda K, Maéda Y, Taniguchi H, Yao M, Wakatsuki S. Production and crystallization of lobster muscle tropomyosin expressed in Sf9 cells. Febs Letters. 394: 201-5. PMID 8843164 DOI: 10.1016/0014-5793(96)00949-0 |
0.34 |
|
| 1995 |
Brown NR, Noble ME, Endicott JA, Garman EF, Wakatsuki S, Mitchell E, Rasmussen B, Hunt T, Johnson LN. The crystal structure of cyclin A. Structure (London, England : 1993). 3: 1235-47. PMID 8591034 DOI: 10.1016/S0969-2126(01)00259-3 |
0.51 |
|
| 1995 |
Duke EM, Wakatsuki S, Hadfield A, Johnson LN. Laue and monochromatic diffraction studies on catalysis in phosphorylase b crystals. Protein Science : a Publication of the Protein Society. 3: 1178-96. PMID 7987213 DOI: 10.1002/Pro.5560030804 |
0.535 |
|
| 1994 |
Wakatsuki S, Kimura Y, Stoeckenius W, Gillis N, Eliezer D, Hodgson KO, Doniach S. Blue form of bacteriorhodopsin and its order-disorder transition during dehydration. Biochimica Et Biophysica Acta. 1185: 160-6. PMID 8167134 DOI: 10.1016/0005-2728(94)90206-2 |
0.305 |
|
| 1994 |
Fülöp V, Phizackerley RP, Soltis SM, Clifton IJ, Wakatsuki S, Erman J, Hajdu J, Edwards SL. Laue diffraction study on the structure of cytochrome c peroxidase compound I. Structure (London, England : 1993). 2: 201-8. PMID 8069633 DOI: 10.1016/S0969-2126(00)00021-6 |
0.533 |
|
| 1994 |
Clifton IJ, Wakatsuki S, Hajdu J. New sources, newer detectors, old methods - the future of protein crystallography at synchrotrons Nuclear Inst. and Methods in Physics Research, B. 87: 76-81. DOI: 10.1016/0168-583X(94)95239-6 |
0.481 |
|
| 1992 |
Duke EMH, Hadfield A, Walters S, Wakatsuki S, Bryan RK, Johnson LN. Time-resolved diffraction studies on glycogen phosphorylase b Philosophical Transactions of the Royal Society A. 340: 245-261. DOI: 10.1098/Rsta.1992.0064 |
0.513 |
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| Show low-probability matches. |