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John F. Marko - Publications

Affiliations: 
Physics & Astronomy Northwestern University, Evanston, IL 
Area:
Applications of statistical mechanics and polymer physics to biophysical problems.
Website:
http://www.physics.northwestern.edu/people/personalpages/jmarko.html

152 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Erbaş A, Marko JF. How do DNA-bound proteins leave their binding sites? The role of facilitated dissociation. Current Opinion in Chemical Biology. 53: 118-124. PMID 31586479 DOI: 10.1016/j.cbpa.2019.08.007  0.36
2019 Renn JP, Bhattacharyya S, Bai H, He C, Li H, Oberhauser AF, Marko JF, Makarov DE, Matouschek A. Mechanical unfolding of spectrin reveals a super-exponential dependence of unfolding rate on force. Scientific Reports. 9: 11101. PMID 31366931 DOI: 10.1038/s41598-019-46525-w  0.4
2019 Stephens AD, Liu PZ, Kandula V, Chen H, Almassalha LM, Herman C, Backman V, O'Halloran T, Adam SA, Goldman RD, Banigan EJ, Marko JF. Physicochemical mechanotransduction alters nuclear shape and mechanics via heterochromatin formation. Molecular Biology of the Cell. 30: 2320-2330. PMID 31365328 DOI: 10.1091/mbc.E19-05-0286  0.6
2019 Stephens AD, Liu PZ, Kandula V, Chen H, Almassalha LM, Herman C, Backman V, O'Halloran T, Adam SA, Goldman RD, Banigan EJ, Marko JF. Physicochemical mechanotransduction alters nuclear shape and mechanics via heterochromatin formation. Molecular Biology of the Cell. mbcE19050286T. PMID 31216230 DOI: 10.1091/mbc.E19-05-0286-T  0.6
2019 Erbaş A, Olvera de la Cruz M, Marko JF. Receptor-Ligand Rebinding Kinetics in Confinement. Biophysical Journal. PMID 31029377 DOI: 10.1016/j.bpj.2019.02.033  0.36
2019 Biggs R, Liu P, Stephens AD, Marko JF. Effects of altering histone post-translational modifications on mitotic chromosome structure and mechanics. Molecular Biology of the Cell. mbcE18090592. PMID 30625026 DOI: 10.1091/mbc.E18-09-0592  0.44
2018 Sun M, Biggs R, Hornick J, Marko JF. Condensin controls mitotic chromosome stiffness and stability without forming a structurally contiguous scaffold. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 30143891 DOI: 10.1007/s10577-018-9584-1  1
2018 Erbaş A, de la Cruz MO, Marko JF. Effects of electrostatic interactions on ligand dissociation kinetics. Physical Review. E. 97: 022405. PMID 29548245 DOI: 10.1103/PhysRevE.97.022405  0.36
2017 Kamar RI, Banigan EJ, Erbas A, Giuntoli RD, Olvera de la Cruz M, Johnson RC, Marko JF. Facilitated dissociation of transcription factors from single DNA binding sites. Proceedings of the National Academy of Sciences of the United States of America. PMID 28364020 DOI: 10.1073/pnas.1701884114  0.68
2016 Keenholtz RA, Grindley ND, Hatfull GF, Marko JF. Crossover-site sequence and DNA torsional stress control strand interchanges by the Bxb1 site-specific serine recombinase. Nucleic Acids Research. PMID 27550179 DOI: 10.1093/nar/gkw724  0.4
2016 Bhattacharyya S, Renn JP, Yu H, Marko JF, Matouschek A. An assay for 26S proteasome activity based on fluorescence anisotropy measurements of dye-labeled protein substrates. Analytical Biochemistry. PMID 27296635 DOI: 10.1016/j.ab.2016.05.026  1
2016 Eastland A, Hornick J, Kawamura R, Nanavati D, Marko JF. Dependence of the structure and mechanics of metaphase chromosomes on oxidized cysteines. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 27145786 DOI: 10.1007/s10577-016-9528-6  1
2016 Hadizadeh N, Johnson RC, Marko JF. Facilitated dissociation of a nucleoid protein from the bacterial chromosome. Journal of Bacteriology. PMID 27044624 DOI: 10.1128/JB.00225-16  0.68
2016 Xiao B, McLean MM, Lei X, Marko JF, Johnson RC. Controlled rotation mechanism of DNA strand exchange by the Hin serine recombinase. Scientific Reports. 6: 23697. PMID 27032966 DOI: 10.1038/srep23697  1
2016 Kharerin H, Bhat PJ, Marko JF, Padinhateeri R. Role of transcription factor-mediated nucleosome disassembly in PHO5 gene expression. Scientific Reports. 6: 20319. PMID 26843321 DOI: 10.1038/srep20319  1
2015 Pederson T, King MC, Marko JF. Forces, fluctuations, and self-organization in the nucleus. Molecular Biology of the Cell. 26: 3915-9. PMID 26543199 DOI: 10.1091/mbc.E15-06-0357  1
2015 Giuntoli RD, Linzer NB, Banigan EJ, Sing CE, de la Cruz MO, Graham JS, Johnson RC, Marko JF. DNA-Segment-Facilitated Dissociation of Fis and NHP6A from DNA Detected via Single-Molecule Mechanical Response. Journal of Molecular Biology. 427: 3123-36. PMID 26220077 DOI: 10.1016/j.jmb.2015.07.015  1
2015 Hornick JE, Duncan FE, Sun M, Kawamura R, Marko JF, Woodruff TK. Age-associated alterations in the micromechanical properties of chromosomes in the mammalian egg. Journal of Assisted Reproduction and Genetics. 32: 765-9. PMID 25758987 DOI: 10.1007/s10815-015-0453-y  1
2015 Marko JF. Biophysics of protein-DNA interactions and chromosome organization. Physica A. 418: 126-153. PMID 25419039 DOI: 10.1016/j.physa.2014.07.045  1
2014 Pederson T, Marko JF. Nuclear physics (of the cell, not the atom). Molecular Biology of the Cell. 25: 3466-9. PMID 25368422 DOI: 10.1091/mbc.E14-03-0790  1
2014 Terekhova K, Marko JF, Mondragón A. Single-molecule analysis uncovers the difference between the kinetics of DNA decatenation by bacterial topoisomerases I and III. Nucleic Acids Research. 42: 11657-67. PMID 25232096 DOI: 10.1093/nar/gku785  1
2014 Banigan EJ, Marko JF. Torque correlation length and stochastic twist dynamics of DNA. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 89: 062706. PMID 25019813 DOI: 10.1103/PhysRevE.89.062706  1
2014 Cocco S, Marko JF, Monasson R. Stochastic ratchet mechanisms for replacement of proteins bound to DNA Physical Review Letters. 112. PMID 24972228 DOI: 10.1103/PhysRevLett.112.238101  1
2014 Sing CE, Olvera de la Cruz M, Marko JF. Multiple-binding-site mechanism explains concentration-dependent unbinding rates of DNA-binding proteins. Nucleic Acids Research. 42: 3783-91. PMID 24393773 DOI: 10.1093/nar/gkt1327  1
2014 Parmar JJ, Marko JF, Padinhateeri R. Nucleosome positioning and kinetics near transcription-start-site barriers are controlled by interplay between active remodeling and DNA sequence. Nucleic Acids Research. 42: 128-36. PMID 24068556 DOI: 10.1093/nar/gkt854  1
2013 Marko JF, Neukirch S. Global force-torque phase diagram for the DNA double helix: structural transitions, triple points, and collapsed plectonemes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 062722. PMID 24483501 DOI: 10.1103/PhysRevE.88.062722  1
2013 Parsaeian A, de la Cruz MO, Marko JF. Binding-rebinding dynamics of proteins interacting nonspecifically with a long DNA molecule. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 040703. PMID 24229102 DOI: 10.1103/PhysRevE.88.040703  1
2013 Sun M, Nishino T, Marko JF. The SMC1-SMC3 cohesin heterodimer structures DNA through supercoiling-dependent loop formation. Nucleic Acids Research. 41: 6149-60. PMID 23620281 DOI: 10.1093/nar/gkt303  1
2013 Agus DB, Alexander JF, Arap W, Ashili S, Aslan JE, Austin RH, Backman V, Bethel KJ, Bonneau R, Chen WC, Chen-Tanyolac C, Choi NC, Curley SA, Dallas M, ... ... Marko J, et al. A physical sciences network characterization of non-tumorigenic and metastatic cells. Scientific Reports. 3: 1449. PMID 23618955 DOI: 10.1038/srep01449  1
2013 Terekhova K, Marko JF, Mondragón A. Studies of bacterial topoisomerases I and III at the single-molecule level. Biochemical Society Transactions. 41: 571-5. PMID 23514156 DOI: 10.1042/BST20120297  1
2013 Bruns AM, Pollpeter D, Hadizadeh N, Myong S, Marko JF, Horvath CM. ATP hydrolysis enhances RNA recognition and antiviral signal transduction by the innate immune sensor, laboratory of genetics and physiology 2 (LGP2). The Journal of Biological Chemistry. 288: 938-46. PMID 23184951 DOI: 10.1074/jbc.M112.424416  1
2012 Zhang H, Marko JF. Range of interaction between DNA-bending proteins is controlled by the second-longest correlation length for bending fluctuations. Physical Review Letters. 109: 248301. PMID 23368394 DOI: 10.1103/PhysRevLett.109.248301  1
2012 Xiao B, Freedman BS, Miller KE, Heald R, Marko JF. Histone H1 compacts DNA under force and during chromatin assembly. Molecular Biology of the Cell. 23: 4864-71. PMID 23097493 DOI: 10.1091/mbc.E12-07-0518  1
2012 Hadizadeh Yazdi N, Guet CC, Johnson RC, Marko JF. Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. 86: 1318-33. PMID 23078205 DOI: 10.1111/mmi.12071  1
2012 Alipour E, Marko JF. Self-organization of domain structures by DNA-loop-extruding enzymes. Nucleic Acids Research. 40: 11202-12. PMID 23074191 DOI: 10.1093/nar/gks925  1
2012 Bai H, Kath JE, Zörgiebel FM, Sun M, Ghosh P, Hatfull GF, Grindley ND, Marko JF. Remote control of DNA-acting enzymes by varying the Brownian dynamics of a distant DNA end. Proceedings of the National Academy of Sciences of the United States of America. 109: 16546-51. PMID 23011800 DOI: 10.1073/pnas.1203118109  1
2012 Terekhova K, Gunn KH, Marko JF, Mondragón A. Bacterial topoisomerase I and topoisomerase III relax supercoiled DNA via distinct pathways. Nucleic Acids Research. 40: 10432-40. PMID 22923519 DOI: 10.1093/nar/gks780  1
2012 Marko JF, Neukirch S. Competition between curls and plectonemes near the buckling transition of stretched supercoiled DNA. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 011908. PMID 22400592 DOI: 10.1103/PhysRevE.85.011908  1
2012 Marko JF. The liquid drop nature of nucleoli. Nucleus (Austin, Tex.). 3: 115-7. PMID 22198683 DOI: 10.4161/nucl.19099  1
2011 Graham JS, Johnson RC, Marko JF. Counting proteins bound to a single DNA molecule. Biochemical and Biophysical Research Communications. 415: 131-4. PMID 22020072 DOI: 10.1016/j.bbrc.2011.10.029  1
2011 Sheinin MY, Forth S, Marko JF, Wang MD. Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors. Physical Review Letters. 107: 108102. PMID 21981534 DOI: 10.1103/PhysRevLett.107.108102  1
2011 Marko JF. Scaling of Linking and Writhing Numbers for Spherically Confined and Topologically Equilibrated Flexible Polymers. Journal of Statistical Physics. 142: 1353-1370. PMID 21686050 DOI: 10.1007/s10955-011-0172-4  1
2011 Padinhateeri R, Marko JF. Nucleosome positioning in a model of active chromatin remodeling enzymes. Proceedings of the National Academy of Sciences of the United States of America. 108: 7799-803. PMID 21518900 DOI: 10.1073/pnas.1015206108  1
2011 Neukirch S, Marko JF. Analytical description of extension, torque, and supercoiling radius of a stretched twisted DNA. Physical Review Letters. 106: 138104. PMID 21517425 DOI: 10.1103/PhysRevLett.106.138104  1
2011 Bai H, Sun M, Ghosh P, Hatfull GF, Grindley ND, Marko JF. Single-molecule analysis reveals the molecular bearing mechanism of DNA strand exchange by a serine recombinase. Proceedings of the National Academy of Sciences of the United States of America. 108: 7419-24. PMID 21502527 DOI: 10.1073/pnas.1018436108  1
2011 Xiao B, Zhang H, Johnson RC, Marko JF. Force-driven unbinding of proteins HU and Fis from DNA quantified using a thermodynamic Maxwell relation. Nucleic Acids Research. 39: 5568-77. PMID 21427084 DOI: 10.1093/nar/gkr141  1
2011 Sun M, Kawamura R, Marko JF. Micromechanics of human mitotic chromosomes. Physical Biology. 8: 015003. PMID 21301072 DOI: 10.1088/1478-3975/8/1/015003  1
2011 Fu H, Chen H, Zhang X, Qu Y, Marko JF, Yan J. Transition dynamics and selection of the distinct S-DNA and strand unpeeling modes of double helix overstretching. Nucleic Acids Research. 39: 3473-81. PMID 21177651 DOI: 10.1093/nar/gkq1278  1
2011 Graham JS, Johnson RC, Marko JF. Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA. Nucleic Acids Research. 39: 2249-59. PMID 21097894 DOI: 10.1093/nar/gkq1140  1
2011 Marko JF. The Mitotic Chromosome: Structure and Mechanics Genome Organization and Function in the Cell Nucleus. 449-485. DOI: 10.1002/9783527639991.ch18  1
2010 Zhang H, Marko JF. Intrinsic and force-generated cooperativity in a theory of DNA-bending proteins. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 82: 051906. PMID 21230499 DOI: 10.1103/PhysRevE.82.051906  1
2010 Park H, Pontius W, Guet CC, Marko JF, Emonet T, Cluzel P. Interdependence of behavioural variability and response to small stimuli in bacteria. Nature. 468: 819-23. PMID 21076396 DOI: 10.1038/nature09551  1
2010 Marko JF. Linking topology of large DNA molecules. Physica A. 389: 2997-3001. PMID 20606760 DOI: 10.1016/j.physa.2010.01.003  1
2010 Xiao B, Johnson RC, Marko JF. Modulation of HU-DNA interactions by salt concentration and applied force. Nucleic Acids Research. 38: 6176-85. PMID 20497998 DOI: 10.1093/nar/gkq435  1
2010 Fu H, Chen H, Marko JF, Yan J. Two distinct overstretched DNA states. Nucleic Acids Research. 38: 5594-600. PMID 20435680 DOI: 10.1093/nar/gkq309  1
2010 Kawamura R, Pope LH, Christensen MO, Sun M, Terekhova K, Boege F, Mielke C, Andersen AH, Marko JF. Mitotic chromosomes are constrained by topoisomerase II-sensitive DNA entanglements. The Journal of Cell Biology. 188: 653-63. PMID 20194637 DOI: 10.1083/jcb.200910085  1
2009 Skoko D, Li M, Huang Y, Mizuuchi M, Cai M, Bradley CM, Pease PJ, Xiao B, Marko JF, Craigie R, Mizuuchi K. Barrier-to-autointegration factor (BAF) condenses DNA by looping. Proceedings of the National Academy of Sciences of the United States of America. 106: 16610-5. PMID 19805345 DOI: 10.1073/pnas.0909077106  1
2009 Marko JF. Linking topology of tethered polymer rings with applications to chromosome segregation and estimation of the knotting length. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 051905. PMID 19518478 DOI: 10.1103/PhysRevE.79.051905  1
2008 Zhang H, Marko JF. Maxwell relations for single-DNA experiments: Monitoring protein binding and double-helix torque with force-extension measurements. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 031916. PMID 18517431 DOI: 10.1103/PhysRevE.77.031916  1
2008 Marko JF. Micromechanical studies of mitotic chromosomes. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 16: 469-97. PMID 18461485 DOI: 10.1007/s10577-008-1233-7  1
2007 Marko JF. Torque and dynamics of linking number relaxation in stretched supercoiled DNA. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 021926. PMID 17930084 DOI: 10.1103/PhysRevE.76.021926  1
2007 Taneja B, Schnurr B, Slesarev A, Marko JF, Mondragón A. Topoisomerase V relaxes supercoiled DNA by a constrained swiveling mechanism. Proceedings of the National Academy of Sciences of the United States of America. 104: 14670-5. PMID 17804808 DOI: 10.1073/pnas.0701989104  1
2007 Ranjith P, Yan J, Marko JF. Nucleosome hopping and sliding kinetics determined from dynamics of single chromatin fibers in Xenopus egg extracts. Proceedings of the National Academy of Sciences of the United States of America. 104: 13649-54. PMID 17698962 DOI: 10.1073/pnas.0701459104  1
2007 Adams CD, Schnurr B, Marko JF, Reznikoff WS. Pulling apart catalytically active Tn5 synaptic complexes using magnetic tweezers. Journal of Molecular Biology. 367: 319-27. PMID 17257617 DOI: 10.1016/j.jmb.2006.12.064  1
2007 Yan J, Maresca TJ, Skoko D, Adams CD, Xiao B, Christensen MO, Heald R, Marko JF. Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics. Molecular Biology of the Cell. 18: 464-74. PMID 17108322 DOI: 10.1091/mbc.E06-09-0800  1
2006 Ranjith P, Marko JF. Filling of the one-dimensional lattice by k-mers proceeds via fast power-law-like kinetics. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 041602. PMID 17155065 DOI: 10.1103/PhysRevE.74.041602  1
2006 Adams CD, Schnurr B, Skoko D, Marko JF, Reznikoff WS. Tn5 transposase loops DNA in the absence of Tn5 transposon end sequences. Molecular Microbiology. 62: 1558-68. PMID 17074070 DOI: 10.1111/j.1365-2958.2006.05471.x  1
2006 Skoko D, Yoo D, Bai H, Schnurr B, Yan J, McLeod SM, Marko JF, Johnson RC. Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis. Journal of Molecular Biology. 364: 777-98. PMID 17045294 DOI: 10.1016/j.jmb.2006.09.043  1
2006 Steiniger M, Adams CD, Marko JF, Reznikoff WS. Defining characteristics of Tn5 Transposase non-specific DNA binding. Nucleic Acids Research. 34: 2820-32. PMID 16717287 DOI: 10.1093/nar/gkl179  1
2006 Pope LH, Xiong C, Marko JF. Proteolysis of mitotic chromosomes induces gradual and anisotropic decondensation correlated with a reduction of elastic modulus and structural sensitivity to rarely cutting restriction enzymes. Molecular Biology of the Cell. 17: 104-13. PMID 16221892 DOI: 10.1091/mbc.E05-04-0321  1
2005 Skoko D, Yan J, Johnson RC, Marko JF. Low-force DNA condensation and discontinuous high-force decondensation reveal a loop-stabilizing function of the protein Fis. Physical Review Letters. 95: 208101. PMID 16384101 DOI: 10.1103/PhysRevLett.95.208101  1
2005 Sankararaman S, Marko JF. Entropic compression of interacting DNA loops. Physical Review Letters. 95: 078104. PMID 16196828 DOI: 10.1103/PhysRevLett.95.078104  1
2005 Yan J, Kawamura R, Marko JF. Statistics of loop formation along double helix DNAs. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 061905. PMID 16089763 DOI: 10.1103/PhysRevE.71.061905  1
2005 Sankararaman S, Marko JF. Formation of loops in DNA under tension. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 021911. PMID 15783356 DOI: 10.1103/PhysRevE.71.021911  1
2005 Ben-Yehuda S, Fujita M, Liu XS, Gorbatyuk B, Skoko D, Yan J, Marko JF, Liu JS, Eichenberger P, Rudner DZ, Losick R. Defining a centromere-like element in Bacillus subtilis by Identifying the binding sites for the chromosome-anchoring protein RacA. Molecular Cell. 17: 773-82. PMID 15780934 DOI: 10.1016/j.molcel.2005.02.023  1
2005 Pope LH, Bennink ML, Van Leijenhorst-Groener KA, Nikova D, Greve J, Marko JF. Single chromatin fiber stretching reveals physically distinct populations of disassembly events Biophysical Journal. 88: 3572-3583. PMID 15695630 DOI: 10.1529/biophysj.104.053074  1
2005 Marko JF. Course 7 Introduction to single-DNA micromechanics Les Houches Summer School Proceedings. 82: 211-270. DOI: 10.1016/S0924-8099(05)80034-4  1
2004 Skoko D, Wong B, Johnson RC, Marko JF. Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6A, and HU reveals their ability to form highly stable DNA-protein complexes. Biochemistry. 43: 13867-74. PMID 15504049 DOI: 10.1021/bi048428o  1
2004 Yan J, Marko JF. Localized single-stranded bubble mechanism for cyclization of short double helix DNA. Physical Review Letters. 93: 108108. PMID 15447460 DOI: 10.1103/PhysRevLett.93.108108  1
2004 Cocco S, Yan J, Léger JF, Chatenay D, Marko JF. Overstretching and force-driven strand separation of double-helix DNA. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 011910. PMID 15324091 DOI: 10.1103/PhysRevE.70.011910  1
2004 Yan J, Skoko D, Marko JF. Near-field-magnetic-tweezer manipulation of single DNA molecules. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 011905. PMID 15324086 DOI: 10.1103/PhysRevE.70.011905  1
2004 Halford SE, Marko JF. How do site-specific DNA-binding proteins find their targets? Nucleic Acids Research. 32: 3040-52. PMID 15178741 DOI: 10.1093/nar/gkh624  1
2003 Cocco S, Marko JF, Monasson R. Slow nucleic acid unzipping kinetics from sequence-defined barriers European Physical Journal E. 10: 153-161. PMID 15011069 DOI: 10.1140/epje/e2003-00019-8  1
2003 Poirier MG, Marko JF. Micromechanical studies of mitotic chromosomes. Current Topics in Developmental Biology. 55: 75-141. PMID 12959194 DOI: 10.1016/S0070-2153(03)01002-0  1
2003 Yan J, Marko JF. Effects of DNA-distorting proteins on DNA elastic response. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 68: 011905. PMID 12935174 DOI: 10.1103/PhysRevE.68.011905  1
2003 Marko JF, Poirier MG. Micromechanics of chromatin and chromosomes. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 81: 209-20. PMID 12897855 DOI: 10.1139/o03-047  1
2003 Cocco S, Marko JF, Monasson R, Sarkar A, Yan J. Force-extension behavior of folding polymers European Physical Journal E. 10: 249-263. DOI: 10.1140/epje/i2002-10113-2  1
2003 Marko JF, Cocco S. The micromechanics of DNA Physics World. 16: 37-41.  1
2002 Cocco S, Monasson R, Marko JF. Unzipping dynamics of long DNAs. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 051914. PMID 12513530 DOI: 10.1103/PhysRevE.66.051914  1
2002 Poirier MG, Marko JF. Mitotic chromosomes are chromatin networks without a mechanically contiguous protein scaffold. Proceedings of the National Academy of Sciences of the United States of America. 99: 15393-7. PMID 12438695 DOI: 10.1073/pnas.232442599  1
2002 Sarkar A, Eroglu S, Poirier MG, Gupta P, Nemani A, Marko JF. Dynamics of chromosome compaction during mitosis. Experimental Cell Research. 277: 48-56. PMID 12061816 DOI: 10.1006/excr.2002.5507  1
2002 Poirier MG, Marko JF. Effect of internal friction on biofilament dynamics. Physical Review Letters. 88: 228103. PMID 12059455 DOI: 10.1103/PhysRevLett.88.228103  1
2002 Poirier MG, Eroglu S, Marko JF. The bending rigidity of mitotic chromosomes. Molecular Biology of the Cell. 13: 2170-9. PMID 12058078  1
2002 Cocco S, Monasson R, Marko JF. Force and kinetic barriers to initiation of DNA unzipping. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 041907. PMID 12005873 DOI: 10.1103/PhysRevE.65.041907  1
2002 Poirier MG, Monhait T, Marko JF. Reversible hypercondensation and decondensation of mitotic chromosomes studied using combined chemical-micromechanical techniques. Journal of Cellular Biochemistry. 85: 422-34. PMID 11948697 DOI: 10.1002/jcb.10132  1
2002 Cocco S, Marko JF, Monasson R. Theoretical models for single-molecule DNA and RNA experiments: From elasticity to unzipping Comptes Rendus Physique. 3: 569-584. DOI: 10.1016/S1631-0705(02)01345-2  1
2001 Sarkar A, Marko JF. Removal of DNA-bound proteins by DNA twisting Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 64: 061909/1-061909/10. PMID 11736212  1
2001 Cocco S, Monasson R, Marko JF. Force and kinetic barriers to unzipping of the DNA double helix Proceedings of the National Academy of Sciences of the United States of America. 98: 8608-8613. PMID 11447279 DOI: 10.1073/pnas.151257598  1
2001 Sarkar A, Léger JF, Chatenay D, Marko JF. Structural transitions in DNA driven by external force and torque. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 63: 051903. PMID 11414929  1
2001 Marshall WF, Marko JF, Agard DA, Sedat JW. Chromosome elasticity and mitotic polar ejection force measured in living Drosophila embryos by four-dimensional microscopy-based motion analysis. Current Biology : Cb. 11: 569-78. PMID 11369201 DOI: 10.1016/S0960-9822(01)00180-4  1
2001 Yan J, Magnasco MO, Marko JF. Kinetic proofreading can explain the supression of supercoiling of circular DNA molecules by type-II topoisomerases. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 63: 031909. PMID 11308680  1
2001 Poirier MG, Nemani A, Gupta P, Eroglu S, Marko JF. Probing chromosome structure with dynamic force relaxation Physical Review Letters. 86: 360-363. DOI: 10.1103/PhysRevLett.86.360  1
2001 Marko JF. Short note on the scaling behavior of communication by 'slithering' on a supercoiled DNA Physica a: Statistical Mechanics and Its Applications. 296: 289-292. DOI: 10.1016/S0378-4371(01)00161-3  1
2000 Stanford NP, Szczelkun MD, Marko JF, Halford SE. One- and three-dimensional pathways for proteins to reach specific DNA sites Embo Journal. 19: 6546-6557. PMID 11101527  1
2000 Poirier M, Eroglu S, Chatenay D, Marko JF. Reversible and irreversible unfolding of mitotic newt chromosomes by applied force. Molecular Biology of the Cell. 11: 269-76. PMID 10637307  1
1999 Yan J, Magnasco MO, Marko JF. A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases. Nature. 401: 932-5. PMID 10553912 DOI: 10.1038/44872  1
1999 Marko JF. Coupling of intramolecular and intermolecular linkage complexity of two DNAs Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 59: 900-912.  1
1999 Léger JF, Romano G, Sarkar A, Robert J, Bourdieu L, Chatenay D, Marko JF. Structural transitions of a twisted and stretched DNA molecule Physical Review Letters. 83: 1066-1069.  1
1998 Leger JF, Robert J, Bourdieu L, Chatenay D, Marko JF. RecA binding to a single double-stranded DNA molecule: a possible role of DNA conformational fluctuations. Proceedings of the National Academy of Sciences of the United States of America. 95: 12295-9. PMID 9770480 DOI: 10.1073/pnas.95.21.12295  1
1997 Marshall WF, Straight A, Marko JF, Swedlow J, Dernburg A, Belmont A, Murray AW, Agard DA, Sedat JW. Interphase chromosomes undergo constrained diffusional motion in living cells. Current Biology : Cb. 7: 930-9. PMID 9382846  1
1997 Marko JF, Siggia ED. Polymer models of meiotic and mitotic chromosomes Molecular Biology of the Cell. 8: 2217-2231. PMID 9362064  1
1997 Marko JF. Twist and shout (and pull): Molecular chiropractors undo DNA Proceedings of the National Academy of Sciences of the United States of America. 94: 11770-11772. PMID 9342311 DOI: 10.1073/pnas.94.22.11770  1
1997 Marko JF, Siggia ED. Driving proteins off DNA using applied tension Biophysical Journal. 73: 2173-2178. PMID 9336213  1
1997 Houchmandzadeh B, Marko JF, Chatenay D, Libchaber A. Elasticity and structure of eukaryote chromosomes studied by micromanipulation and micropipette aspiration. The Journal of Cell Biology. 139: 1-12. PMID 9314524 DOI: 10.1083/jcb.139.1.1  1
1997 Oram M, Marko JF, Halford SE. Communications between distant sites on supercoiled DNA from non-exponential kinetics for DNA synapsis by resolvase. Journal of Molecular Biology. 270: 396-412. PMID 9237906 DOI: 10.1006/jmbi.1997.1109  1
1997 Vologodskii AV, Marko JF. Extension of torsionally stressed DNA by external force Biophysical Journal. 73: 123-132. PMID 9199777  1
1997 Marko JF. Stretching must twist DNA Europhysics Letters. 38: 183-188. DOI: 10.1209/epl/i1997-00223-5  1
1997 Marko JF. Supercoiled and braided DNA under tension Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 55: 1758-1772.  1
1997 Fygenson DK, Marko JF, Libchaber A. Mechanics of microtubule-based membrane extension Physical Review Letters. 79: 4497-4500.  1
1997 Marko JF. The internal 'slithering' dynamics of supercoiled DNA Physica a: Statistical Mechanics and Its Applications. 244: 263-277.  1
1996 Barkema GT, Caron C, Marko JF. Scaling properties of gel electrophoresis of DNA Biopolymers. 38: 665-667. DOI: 10.1002/(SICI)1097-0282(199605)38:5<665::AID-BIP10>3.0.CO;2-7  1
1996 MacFarland T, Barkema GT, Marko JF. Equilibrium phase transitions in a porous medium Physical Review B - Condensed Matter and Materials Physics. 53: 148-158.  1
1995 Marko JF, Siggia ED. Statistical mechanics of supercoiled DNA Physical Review E. 52: 2912-2938. DOI: 10.1103/PhysRevE.52.2912  1
1995 Marko JF, Barkema GT. Phase ordering in the Ising model with conserved spin Physical Review E. 52: 2522-2534. DOI: 10.1103/PhysRevE.52.2522  1
1995 Marko JF, Siggia ED. Stretching DNA Macromolecules. 28: 8759-8770.  1
1995 Brown G, Chakrabarti A, Marko JF. Layering phase separation of densely grafted diblock copolymers Macromolecules. 28: 7817-7821.  1
1994 Barkema GT, Marko JF, Widom B. Electrophoresis of charged polymers: Simulation and scaling in a lattice model of reptation. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 49: 5303-5309. PMID 9961857 DOI: 10.1103/PhysRevE.49.5303  1
1994 Bustamante C, Marko JF, Siggia ED, Smith S. Entropic elasticity of λ-phage DNA Science. 265: 1599-1600. PMID 8079175 DOI: 10.1126/science.8079175  1
1994 Marko JF, Siggia ED. Fluctuations and supercoiling of DNA Science. 265: 506-508. PMID 8036491  1
1994 Brown G, Chakrabarti A, Marko JF. Surface-induced nucleation Physical Review E. 50: 1674-1677. DOI: 10.1103/PhysRevE.50.1674  1
1994 Dong H, Marko JF, Witten TA. Phase separation of grafted copolymers Macromolecules®. 27: 6428-6442.  1
1994 Krausch G, Kramer EJ, Bates FS, Marko JF, Brown G, Chakrabarti A. Surface-induced asymmetries during spinodal decomposition in off-critical polymer mixtures Macromolecules. 27: 6768-6776.  1
1994 Marko JF, Siggia ED. Bending and twisting elasticity of DNA Macromolecules. 27: 981-988.  1
1993 Barkema GT, Marko JF. Accelerating diffusive nonequilibrium processes in discrete spin systems Physical Review Letters. 71: 2070-2073. DOI: 10.1103/PhysRevLett.71.2070  1
1993 Marko JF. Influence of surface interactions on spinodal decomposition Physical Review E. 48: 2861-2879. DOI: 10.1103/PhysRevE.48.2861  1
1993 Marko JF, Chakrabarti A. Static and dynamic collective correlations of polymer brushes Physical Review E. 48: 2739-2743. DOI: 10.1103/PhysRevE.48.2739  1
1993 Vanderzande C, Marko JF. Logarithmic corrections for the percolative properties of the four-state Potts model Journal of Physics a: Mathematical and General. 26: 7391-7403. DOI: 10.1088/0305-4470/26/24/014  1
1993 Marko JF, Johner A, Marques CM. Grafted polymers under the influence of external fields The Journal of Chemical Physics. 99: 8142-8153.  1
1993 Marko JF. Microphase separation of block copolymer rings Macromolecules. 26: 1442-1444.  1
1993 Marko JF. Polymer brush in contact with a mixture of solvents Macromolecules. 26: 313-319.  1
1992 Marko JF. Cluster scaling geometry in critical spin systems Physical Review B. 45: 5023-5026. DOI: 10.1103/PhysRevB.45.5023  1
1992 Marko JF, Rabin Y. Microphase separation of charged diblock copolymers. Melts and solutions Macromolecules. 25: 1503-1509.  1
1992 Marko JF, Witten TA. Correlations in grafted polymer layers Macromolecules. 25: 296-307.  1
1991 Marko JF, Witten TA. Phase separation in a grafted polymer layer Physical Review Letters. 66: 1541-1544. DOI: 10.1103/PhysRevLett.66.1541  1
1991 Rabin Y, Marko JF. Microphase separation in charged diblock copolymers. The weak segregation limit Macromolecules. 24: 2134-2136.  1
1991 Ball RC, Marko JF, Milner ST, Witten TA. Polymers grafted to a convex surface Macromolecules. 24: 693-703.  1
1989 Raja VN, Ratna BR, Shashidhar R, Heppke G, Bahr C, Marko JF, Indekeu JO, Berker AN. Pressure studies on phase transitions in 4-alkoxyphenyl-4'-nitrobenzoyloxybenzoates. Physical Review. A. 39: 4341-4344. PMID 9901780 DOI: 10.1103/PhysRevA.39.4341  1
1989 Marko JF, Indekeu JO, Berker AN. Mixtures in the frustrated spin-gas theory of reentrant polar liquid crystals. Physical Review. A. 39: 4201-4206. PMID 9901750 DOI: 10.1103/PhysRevA.39.4201  1
1989 Marko JF. Exact pair correlations in a one-dimensional fluid of hard cores with orientational and translational degrees of freedom Physical Review Letters. 62: 543-546. DOI: 10.1103/PhysRevLett.62.543  1
1989 Marko JF. First-order phase transitions in the hard-ellipsoid fluid from variationally optimized direct pair correlations Physical Review A. 39: 2050-2062. DOI: 10.1103/PhysRevA.39.2050  1
1988 Marko JF. Accurate calculation of isotropic-plastic and isotropic-nematic transitions in the hard-ellipsoid fluid Physical Review Letters. 60: 325-328. DOI: 10.1103/PhysRevLett.60.1101.2  1
1984 Marko JF, Razavy M. Dynamical symmetries of a class of action equivalent Hamiltonians Lettere Al Nuovo Cimento Series 2. 40: 533-536. DOI: 10.1007/BF02749386  1
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