Chuang Liang, Ph.D. - Publications

Affiliations: 
2007 Northwestern University, Evanston, IL 
Area:
Quantum communications and computing, nonlinear and quantum optics, fiber-optic communications, all-optical networks.

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Ye C, Ji G, Liang C. detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes. Scientific Reports. 6: 19688. PMID 26795595 DOI: 10.1038/srep19688  0.48
2016 Li J, Liang C, Liu X, Huai B, Chen J, Yao Q, Qin Y, Liu Z, Luo X. Effect of Zn and NAA co-treatment on the occurrence of creasing fruit and the peel development of 'Shatangju' mandarin Scientia Horticulturae. 201: 230-237. DOI: 10.1016/j.scienta.2016.01.039  0.36
2016 Liang C, Liu L, Li H, Qian D, Liu C, Jia J, Chen J. Microstructural characterization of sulfur-doped Bi2Te3 crystals Materials Characterization. 114: 172-178. DOI: 10.1016/j.matchar.2016.02.009  0.36
2016 Chen C, Yang M, Chen J, Liang C. The viscoelastic contribution to polymer-coated SAW sensor for TNT vapor detection Optik. 127: 3638-3642. DOI: 10.1016/j.ijleo.2015.12.156  0.36
2015 Shi J, Dong M, Li L, Liu L, Luz-Madrigal A, Tsonis PA, Del Rio-Tsonis K, Liang C. mirPRo-a novel standalone program for differential expression and variation analysis of miRNAs. Scientific Reports. 5: 14617. PMID 26434581 DOI: 10.1038/srep14617  0.48
2015 Kumar PK, Hoang TV, Robinson ML, Tsonis PA, Liang C. CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data. Scientific Reports. 5: 13443. PMID 26304587 DOI: 10.1038/srep13443  0.48
2015 Li L, Ji G, Ye C, Shu C, Zhang J, Liang C. PlantOrDB: a genome-wide ortholog database for land plants and green algae. Bmc Plant Biology. 15: 161. PMID 26112452 DOI: 10.1186/s12870-015-0531-4  0.48
2015 Guo C, Li L, Wang X, Liang C. Alterations in siRNA and miRNA expression profiles detected by deep sequencing of transgenic rice with siRNA-mediated viral resistance. Plos One. 10: e0116175. PMID 25559820 DOI: 10.1371/journal.pone.0116175  0.48
2015 Kumar PKR, Hoang TV, Robinson ML, Tsonis PA, Liang C. CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data Scientific Reports. 5. DOI: 10.1038/srep13443  0.48
2014 Wang K, Liang C, Liu J, Xiao H, Huang S, Xu J, Li F. Prediction of piRNAs using transposon interaction and a support vector machine. Bmc Bioinformatics. 15: 419. PMID 25547961 DOI: 10.1186/s12859-014-0419-6  0.48
2014 Hoang TV, Kumar PK, Sutharzan S, Tsonis PA, Liang C, Robinson ML. Comparative transcriptome analysis of epithelial and fiber cells in newborn mouse lenses with RNA sequencing. Molecular Vision. 20: 1491-517. PMID 25489224  0.48
2014 Mao R, Raj Kumar PK, Guo C, Zhang Y, Liang C. Comparative analyses between retained introns and constitutively spliced introns in Arabidopsis thaliana using random forest and support vector machine. Plos One. 9: e104049. PMID 25110928 DOI: 10.1371/journal.pone.0104049  0.48
2014 Morton JT, Abrudan P, Figueroa N, Liang C, Karro JE. SCOPE++: sequence classification of homoPolymer emissions. Genomics. 104: 157-62. PMID 25087770 DOI: 10.1016/j.ygeno.2014.07.005  0.48
2014 Ray WC, Wolock SL, Callahan NW, Dong M, Li QQ, Liang C, Magliery TJ, Bartlett CW. Addressing the unmet need for visualizing conditional random fields in biological data. Bmc Bioinformatics. 15: 202. PMID 25000815 DOI: 10.1186/1471-2105-15-202  0.48
2014 Zhao Z, Wu X, Kumar PK, Dong M, Ji G, Li QQ, Liang C. Bioinformatics analysis of alternative polyadenylation in green alga Chlamydomonas reinhardtii using transcriptome sequences from three different sequencing platforms. G3 (Bethesda, Md.). 4: 871-83. PMID 24626288 DOI: 10.1534/g3.114.010249  0.48
2014 Sreeskandarajan S, Flowers MM, Karro JE, Liang C. A MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences. Bioinformatics (Oxford, England). 30: 887-8. PMID 24215021 DOI: 10.1093/bioinformatics/btt651  0.48
2014 Zhao Z, Guo C, Sutharzan S, Li P, Echt CS, Zhang J, Liang C. Genome-Wide analysis of tandem repeats in plants and green algae G3: Genes, Genomes, Genetics. 4: 67-78. PMID 24192840 DOI: 10.1534/g3.113.008524  0.48
2014 Batesole K, Wimalanathan K, Liu L, Zhang F, Echt CS, Liang C. YouGenMap: A web platform for dynamic multi-comparative mapping and visualization of genetic maps Frontiers in Genetics. 5. DOI: 10.3389/fgene.2014.00183  0.48
2013 Ream DC, Murakami ST, Schmidt EE, Huang GH, Liang C, Friedberg I, Cheng XW. Comparative analysis of error-prone replication mononucleotide repeats across baculovirus genomes. Virus Research. 178: 217-25. PMID 24140718 DOI: 10.1016/j.virusres.2013.10.005  0.48
2012 Li P, Ji G, Dong M, Schmidt E, Lenox D, Chen L, Liu Q, Liu L, Zhang J, Liang C. CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis. Bioinformatics (Oxford, England). 28: 2382-4. PMID 22789590 DOI: 10.1093/bioinformatics/bts443  0.48
2012 Duan X, Schmidt E, Li P, Lenox D, Liu L, Shu C, Zhang J, Liang C. PeanutDB: an integrated bioinformatics web portal for Arachis hypogaea transcriptomics Bmc Plant Biology. 12. PMID 22712730 DOI: 10.1186/1471-2229-12-94  0.48
2012 Zhou S, Ji G, Liu X, Li P, Moler J, Karro JE, Liang C. Pattern analysis approach reveals restriction enzyme cutting abnormalities and other cDNA library construction artifacts using raw EST data. Bmc Biotechnology. 12: 16. PMID 22554190 DOI: 10.1186/1472-6750-12-16  0.48
2012 Gong P, Guan X, Pirooznia M, Liang C, Perkins EJ. Gene expression analysis of CL-20-induced reversible neurotoxicity reveals GABA(A) receptors as potential targets in the earthworm Eisenia fetida. Environmental Science & Technology. 46: 1223-32. PMID 22191394 DOI: 10.1021/es203642e  0.48
2012 Zhang Y, Rao D, Ozden M, Mueller J, Kumar PR, Liang C, Karro JE. Poster: De novo expression fragment assembly from spanning trees (EAST) 2012 Ieee 2nd International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2012. DOI: 10.1109/ICCABS.2012.6182662  0.48
2012 Morton JT, Abrudan P, Liang C, Karro JE. Poster: Sequence classification of homopolymer emissions (SCOPE) 2012 Ieee 2nd International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2012. DOI: 10.1109/ICCABS.2012.6182655  0.48
2011 Wu X, Liu M, Downie B, Liang C, Ji G, Li QQ, Hunt AG. Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation. Proceedings of the National Academy of Sciences of the United States of America. 108: 12533-8. PMID 21746925 DOI: 10.1073/pnas.1019732108  0.48
2011 Specht M, Stanke M, Terashima M, Naumann-Busch B, Janssen I, Höhner R, Hom EF, Liang C, Hippler M. Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome. Proteomics. 11: 1814-23. PMID 21432999 DOI: 10.1002/pmic.201000621  0.48
2011 Echt CS, Saha S, Krutovsky KV, Wimalanathan K, Erpelding JE, Liang C, Nelson CD. An annotated genetic map of loblolly pine based on microsatellite and cDNA markers Bmc Genetics. 12. PMID 21269494 DOI: 10.1186/1471-2156-12-17  0.48
2011 Zhang Y, Rao DM, Mueller J, Ozden M, Liang C, Karro JE. Workshop: Transcript assembly through a d2-based MST approach 2011 Ieee 1st International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2011. 279. DOI: 10.1109/ICCABS.2011.5729933  0.48
2010 Rao DM, Moler JC, Ozden M, Zhang Y, Liang C, Karro JE. PEACE: Parallel Environment for Assembly and Clustering of Gene Expression Nucleic Acids Research. 38: W737-W742. PMID 20522511 DOI: 10.1093/nar/gkq470  0.48
2009 Liang C, Liu L, Ji G. WebGMAP: A web service for mapping and aligning cDNA sequences to genomes Nucleic Acids Research. 37: W77-W83. PMID 19465381 DOI: 10.1093/nar/gkp389  0.48
2008 Conner JA, Goel S, Gunawan G, Cordonnier-Pratt MM, Johnson VE, Liang C, Wang H, Pratt LH, Mullet JE, DeBarry J, Yang L, Bennetzen JL, Klein PE, Ozias-Akins P. Sequence analysis of bacterial artificial chromosome clones from the apospory-specific genomic region of Pennisetum and Cenchrus. Plant Physiology. 147: 1396-411. PMID 18508959 DOI: 10.1104/pp.108.119081  0.48
2008 Shen Y, Liu Y, Liu L, Liang C, Li QQ. Unique features of nuclear mRNA poly(A) signals and alternative polyadenylation in Chlamydomonas reinhardtii Genetics. 179: 167-176. PMID 18493049 DOI: 10.1534/genetics.108.088971  0.48
2008 Liang C, Liu Y, Liu L, Davis AC, Shen Y, Li QQ. Expressed sequence tags with cDNA termini: previously overlooked resources for gene annotation and transcriptome exploration in Chlamydomonas reinhardtii. Genetics. 179: 83-93. PMID 18493042 DOI: 10.1534/genetics.107.085605  0.48
2008 Zhao Y, Ma P, Lan J, Liang C, Ji G. An improved ant colony algorithm for DNA sequence alignment 2008 International Symposium On Information Science and Engineering, Isise 2008. 2: 683-688. DOI: 10.1109/ISISE.2008.82  0.48
2008 Gong P, Pirooznia M, Guan X, Vera JC, Liang C, Deng Y, Zhang C, Perkins EJ. A strategy for high throughput microarray oligo probe design using 454 and sanger sequencing data of Eisenia fetida expressed sequence tags Proceedings of the 2008 International Conference On Bioinformatics and Computational Biology, Biocomp 2008. 1040-1043.  0.48
2007 Liang C, Lee KF, Medic M, Kumar P, Hadfield RH, Nam SW. Characterization of fiber-generated entangled photon pairs with superconducting single-photon detectors. Optics Express. 15: 1322-7. PMID 19532362 DOI: 10.1364/OE.15.001322  0.44
2007 Liang C, Wang G, Liu L, Ji G, Fang L, Liu Y, Carter K, Webb JS, Dean JF. ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs). Bmc Genomics. 8: 134. PMID 17535431 DOI: 10.1186/1471-2164-8-134  0.48
2007 Liang C, Wang G, Liu L, Ji G, Liu Y, Chen J, Webb JS, Reese G, Dean JF. WebTraceMiner: a web service for processing and mining EST sequence trace files. Nucleic Acids Research. 35: W137-42. PMID 17488839 DOI: 10.1093/nar/gkm299  0.48
2006 Liang C, Lee KF, Levin T, Chen J, Kumar P. Ultra stable all-fiber telecom-band entangled photon-pair source for turnkey quantum communication applications. Optics Express. 14: 6936-41. PMID 19516877  0.44
2006 Chen J, Lee KF, Liang C, Kumar P. Fiber-based telecom-band degenerate-frequency source of entangled photon pairs. Optics Letters. 31: 2798-800. PMID 16936896  0.44
2006 Lee KF, Chen J, Liang C, Li X, Voss PL, Kumar P. Generation of high-purity telecom-band entangled photon pairs in dispersion-shifted fiber. Optics Letters. 31: 1905-7. PMID 16729110  0.44
2006 Lorenz WW, Sun F, Liang C, Kolychev D, Wang H, Zhao X, Cordonnier-Pratt MM, Pratt LH, Dean JFD. Water stress-responsive genes in loblolly pine (Pinus taeda) roots identified by analyses of expressed sequence tag libraries Tree Physiology. 26: 1-16. PMID 16203709  0.48
2006 Liang C, Sun F, Wang H, Qu J, Freeman RM, Pratt LH, Cordonnier-Pratt MM. MAGIC-SSP: A database-driven DNA sequence processing package with associated management tools Bmc Bioinformatics. 7. DOI: 10.1186/1471-2105-7-115  0.48
2005 Pratt LH, Liang C, Shah M, Sun F, Wang H, Reid SP, Gingle AR, Paterson AH, Wing R, Dean R, Klein R, Nguyen HT, Ma HM, Zhao X, Morishige DT, et al. Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts. Plant Physiology. 139: 869-84. PMID 16169961 DOI: 10.1104/pp.105.066134  0.48
2004 Cordonnier-Pratt MM, Liang C, Wang H, Kolychev DS, Sun F, Freeman R, Sullivan R, Pratt LH. MAGIC Database and interfaces: An integrated package for gene discovery and expression Comparative and Functional Genomics. 5: 268-275. DOI: 10.1002/cfg.399  0.48
2003 Corndorf E, Barbosa G, Liang C, Yuen HP, Kumar P. High-speed data encryption over 25 km of fiber by two-mode coherent-state quantum cryptography. Optics Letters. 28: 2040-2. PMID 14587808  0.44
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