| Year |
Citation |
Score |
| 2024 |
Emani PS, Liu JJ, Clarke D, Jensen M, Warrell J, Gupta C, Meng R, Lee CY, Xu S, Dursun C, Lou S, Chen Y, Chu Z, Galeev T, Hwang A, ... ... Bakken TE, et al. Single-cell genomics and regulatory networks for 388 human brains. Biorxiv : the Preprint Server For Biology. PMID 38562822 DOI: 10.1101/2024.03.18.585576 |
0.329 |
|
| 2023 |
Lee BR, Dalley R, Miller JA, Chartrand T, Close J, Mann R, Mukora A, Ng L, Alfiler L, Baker K, Bertagnolli D, Brouner K, Casper T, Csajbok E, Donadio N, ... ... Bakken T, et al. Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex. Science (New York, N.Y.). 382: eadf6484. PMID 37824669 DOI: 10.1126/science.adf6484 |
0.355 |
|
| 2023 |
Siletti K, Hodge R, Mossi Albiach A, Lee KW, Ding SL, Hu L, Lönnerberg P, Bakken T, Casper T, Clark M, Dee N, Gloe J, Hirschstein D, Shapovalova NV, Keene CD, et al. Transcriptomic diversity of cell types across the adult human brain. Science (New York, N.Y.). 382: eadd7046. PMID 37824663 DOI: 10.1126/science.add7046 |
0.31 |
|
| 2023 |
Jorstad NL, Close J, Johansen N, Yanny AM, Barkan ER, Travaglini KJ, Bertagnolli D, Campos J, Casper T, Crichton K, Dee N, Ding SL, Gelfand E, Goldy J, Hirschstein D, ... ... Bakken TE, et al. Transcriptomic cytoarchitecture reveals principles of human neocortex organization. Science (New York, N.Y.). 382: eadf6812. PMID 37824655 DOI: 10.1126/science.adf6812 |
0.361 |
|
| 2023 |
Johansen N, Somasundaram S, Travaglini KJ, Yanny AM, Shumyatcher M, Casper T, Cobbs C, Dee N, Ellenbogen R, Ferreira M, Goldy J, Guzman J, Gwinn R, Hirschstein D, Jorstad NL, ... ... Bakken TE, et al. Interindividual variation in human cortical cell type abundance and expression. Science (New York, N.Y.). 382: eadf2359. PMID 37824649 DOI: 10.1126/science.adf2359 |
0.335 |
|
| 2023 |
Li YE, Preissl S, Miller M, Johnson ND, Wang Z, Jiao H, Zhu C, Wang Z, Xie Y, Poirion O, Kern C, Pinto-Duarte A, Tian W, Siletti K, Emerson N, ... ... Bakken T, et al. A comparative atlas of single-cell chromatin accessibility in the human brain. Science (New York, N.Y.). 382: eadf7044. PMID 37824643 DOI: 10.1126/science.adf7044 |
0.342 |
|
| 2023 |
Jorstad NL, Song JHT, Exposito-Alonso D, Suresh H, Castro-Pacheco N, Krienen FM, Yanny AM, Close J, Gelfand E, Long B, Seeman SC, Travaglini KJ, Basu S, Beaudin M, Bertagnolli D, ... ... Bakken TE, et al. Comparative transcriptomics reveals human-specific cortical features. Science (New York, N.Y.). 382: eade9516. PMID 37824638 DOI: 10.1126/science.ade9516 |
0.323 |
|
| 2023 |
Suresh H, Crow M, Jorstad N, Hodge R, Lein E, Dobin A, Bakken T, Gillis J. Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution. Nature Ecology & Evolution. PMID 37667001 DOI: 10.1038/s41559-023-02186-7 |
0.312 |
|
| 2022 |
Luo C, Liu H, Xie F, Armand EJ, Siletti K, Bakken TE, Fang R, Doyle WI, Stuart T, Hodge RD, Hu L, Wang BA, Zhang Z, Preissl S, Lee DS, et al. Single nucleus multi-omics identifies human cortical cell regulatory genome diversity. Cell Genomics. 2. PMID 35419551 DOI: 10.1016/j.xgen.2022.100107 |
0.348 |
|
| 2021 |
Berg J, Sorensen SA, Ting JT, Miller JA, Chartrand T, Buchin A, Bakken TE, Budzillo A, Dee N, Ding SL, Gouwens NW, Hodge RD, Kalmbach B, Lee C, Lee BR, et al. Human neocortical expansion involves glutamatergic neuron diversification. Nature. 598: 151-158. PMID 34616067 DOI: 10.1038/s41586-021-03813-8 |
0.336 |
|
| 2021 |
Bakken TE, Jorstad NL, Hu Q, Lake BB, Tian W, Kalmbach BE, Crow M, Hodge RD, Krienen FM, Sorensen SA, Eggermont J, Yao Z, Aevermann BD, Aldridge AI, Bartlett A, et al. Comparative cellular analysis of motor cortex in human, marmoset and mouse. Nature. 598: 111-119. PMID 34616062 DOI: 10.1038/s41586-021-03465-8 |
0.329 |
|
| 2021 |
Bakken TE, van Velthoven CT, Menon V, Hodge RD, Yao Z, Nguyen TN, Graybuck LT, Horwitz GD, Bertagnolli D, Goldy J, Yanny AM, Garren E, Parry S, Casper T, Shehata SI, et al. Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans. Elife. 10. PMID 34473054 DOI: 10.7554/eLife.64875 |
0.323 |
|
| 2021 |
Aevermann BD, Zhang Y, Novotny M, Keshk M, Bakken TE, Miller JA, Hodge RD, Lelieveldt B, Lein ES, Scheuermann RH. A machine learning method for the discovery of minimum marker gene combinations for cell-type identification from single-cell RNA sequencing. Genome Research. PMID 34088715 DOI: 10.1101/gr.275569.121 |
0.325 |
|
| 2020 |
Huang AY, Li P, Rodin RE, Kim SN, Dou Y, Kenny CJ, Akula SK, Hodge RD, Bakken TE, Miller JA, Lein ES, Park PJ, Lee EA, Walsh CA. Parallel RNA and DNA analysis after deep sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain. Proceedings of the National Academy of Sciences of the United States of America. PMID 32522880 DOI: 10.1073/Pnas.2006163117 |
0.687 |
|
| 2020 |
Hodge RD, Miller JA, Novotny M, Kalmbach BE, Ting JT, Bakken TE, Aevermann BD, Barkan ER, Berkowitz-Cerasano ML, Cobbs C, Diez-Fuertes F, Ding SL, McCorrison J, Schork NJ, Shehata SI, et al. Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons. Nature Communications. 11: 1172. PMID 32127543 DOI: 10.1038/s41467-020-14952-3 |
0.69 |
|
| 2019 |
Smith SJ, Sümbül U, Graybuck LT, Collman F, Seshamani S, Gala R, Gliko O, Elabbady L, Miller JA, Bakken TE, Rossier J, Yao Z, Lein E, Zeng H, Tasic B, et al. Single-cell transcriptomic evidence for dense intracortical neuropeptide networks. Elife. 8. PMID 31710287 DOI: 10.7554/Elife.47889 |
0.695 |
|
| 2019 |
Weed N, Bakken T, Graddis N, Gouwens N, Millman D, Hawrylycz M, Waters J. Identification of genetic markers for cortical areas using a Random Forest classification routine and the Allen Mouse Brain Atlas. Plos One. 14: e0212898. PMID 31483788 DOI: 10.1371/Journal.Pone.0212898 |
0.406 |
|
| 2019 |
Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, et al. Conserved cell types with divergent features in human versus mouse cortex. Nature. PMID 31435019 DOI: 10.1038/S41586-019-1506-7 |
0.693 |
|
| 2019 |
Molnár Z, Clowry GJ, Šestan N, Alzu'bi A, Bakken T, Hevner RF, Hüppi PS, Kostović I, Rakic P, Anton ES, Edwards D, Garcez P, Hoerder-Suabedissen A, Kriegstein A. New insights into the development of the human cerebral cortex. Journal of Anatomy. PMID 31373394 DOI: 10.1111/Joa.13055 |
0.461 |
|
| 2019 |
Coe BP, Stessman HAF, Sulovari A, Geisheker MR, Bakken TE, Lake AM, Dougherty JD, Lein ES, Hormozdiari F, Bernier RA, Eichler EE. Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity. Nature Genetics. 51: 106-116. PMID 30559488 DOI: 10.1038/S41588-018-0288-4 |
0.643 |
|
| 2019 |
Smith SJ, Sümbül U, Graybuck LT, Collman F, Seshamani S, Gala R, Gliko O, Elabbady L, Miller JA, Bakken TE, Rossier J, Yao Z, Lein E, Zeng H, Tasic B, et al. Author response: Single-cell transcriptomic evidence for dense intracortical neuropeptide networks Elife. DOI: 10.7554/Elife.47889.Sa2 |
0.473 |
|
| 2018 |
Bakken TE, Hodge RD, Miller JA, Yao Z, Nguyen TN, Aevermann B, Barkan E, Bertagnolli D, Casper T, Dee N, Garren E, Goldy J, Graybuck LT, Kroll M, Lasken RS, et al. Single-nucleus and single-cell transcriptomes compared in matched cortical cell types. Plos One. 13: e0209648. PMID 30586455 DOI: 10.1371/Journal.Pone.0209648 |
0.708 |
|
| 2018 |
Kalmbach BE, Buchin A, Long B, Close J, Nandi A, Miller JA, Bakken TE, Hodge RD, Chong P, de Frates R, Dai K, Maltzer Z, Nicovich PR, Keene CD, Silbergeld DL, et al. h-Channels Contribute to Divergent Intrinsic Membrane Properties of Supragranular Pyramidal Neurons in Human versus Mouse Cerebral Cortex. Neuron. PMID 30392798 DOI: 10.1016/J.Neuron.2018.10.012 |
0.361 |
|
| 2018 |
Tasic B, Yao Z, Graybuck LT, Smith KA, Nguyen TN, Bertagnolli D, Goldy J, Garren E, Economo MN, Viswanathan S, Penn O, Bakken T, Menon V, Miller J, Fong O, et al. Shared and distinct transcriptomic cell types across neocortical areas. Nature. 563: 72-78. PMID 30382198 DOI: 10.1038/S41586-018-0654-5 |
0.444 |
|
| 2018 |
Boldog E, Bakken TE, Hodge RD, Novotny M, Aevermann BD, Baka J, Bordé S, Close JL, Diez-Fuertes F, Ding SL, Faragó N, Kocsis ÁK, Kovács B, Maltzer Z, McCorrison JM, et al. Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type. Nature Neuroscience. PMID 30150662 DOI: 10.1038/S41593-018-0205-2 |
0.719 |
|
| 2018 |
Skene NG, Bryois J, Bakken TE, Breen G, Crowley JJ, Gaspar HA, Giusti-Rodriguez P, Hodge RD, Miller JA, Muñoz-Manchado AB, O'Donovan MC, Owen MJ, Pardiñas AF, Ryge J, Walters JTR, et al. Genetic identification of brain cell types underlying schizophrenia. Nature Genetics. PMID 29785013 DOI: 10.1038/s41588-018-0129-5 |
0.681 |
|
| 2018 |
Aevermann BD, Novotny M, Bakken T, Miller JA, Diehl AD, Osumi-Sutherland D, Lasken RS, Lein ES, Scheuermann RH. Big data and single cell transcriptomics: implications for ontological representation. Human Molecular Genetics. PMID 29590361 DOI: 10.1093/Hmg/Ddy100 |
0.649 |
|
| 2017 |
Bakken T, Cowell L, Aevermann BD, Novotny M, Hodge R, Miller JA, Lee A, Chang I, McCorrison J, Pulendran B, Qian Y, Schork NJ, Lasken RS, Lein ES, Scheuermann RH. Cell type discovery and representation in the era of high-content single cell phenotyping. Bmc Bioinformatics. 18: 559. PMID 29322913 DOI: 10.1186/S12859-017-1977-1 |
0.674 |
|
| 2017 |
Close JL, Yao Z, Levi BP, Miller JA, Bakken TE, Menon V, Ting JT, Wall A, Krostag AR, Thomsen ER, Nelson AM, Mich JK, Hodge RD, Shehata SI, Glass IA, et al. Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation. Neuron. 93: 1035-1048.e5. PMID 28279351 DOI: 10.1016/J.Neuron.2017.02.014 |
0.46 |
|
| 2016 |
Aevermann B, McCorrison J, Venepally P, Hodge R, Bakken T, Miller J, Novotny M, Tran DN, Diezfuertes F, Christiansen L, Zhang F, Steemers F, Lasken RS, Lein ED, Schork N, et al. PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 564-575. PMID 27897007 |
0.411 |
|
| 2016 |
Bakken TE, Miller JA, Ding SL, Sunkin SM, Smith KA, Ng L, Szafer A, Dalley RA, Royall JJ, Lemon T, Shapouri S, Aiona K, Arnold J, Bennett JL, Bertagnolli D, et al. A comprehensive transcriptional map of primate brain development. Nature. PMID 27409810 DOI: 10.1038/Nature18637 |
0.701 |
|
| 2015 |
Bakken TE, Miller JA, Luo R, Bernard A, Bennett JL, Lee CK, Bertagnolli D, Parikshak NN, Smith KA, Sunkin SM, Amaral DG, Geschwind DH, Lein ES. Spatiotemporal dynamics of the postnatal developing primate brain transcriptome. Human Molecular Genetics. 24: 4327-39. PMID 25954031 DOI: 10.1093/Hmg/Ddv166 |
0.675 |
|
| 2014 |
Pfenning AR, Hara E, Whitney O, Rivas MV, Wang R, Roulhac PL, Howard JT, Wirthlin M, Lovell PV, Ganapathy G, Mouncastle J, Moseley MA, Thompson JW, Soderblom EJ, Iriki A, ... ... Bakken T, et al. Convergent transcriptional specializations in the brains of humans and song-learning birds. Science (New York, N.Y.). 346: 1256846. PMID 25504733 DOI: 10.1126/Science.1256846 |
0.624 |
|
| 2014 |
Bernier R, Golzio C, Xiong B, Stessman HA, Coe BP, Penn O, Witherspoon K, Gerdts J, Baker C, Vulto-van Silfhout AT, Schuurs-Hoeijmakers JH, Fichera M, Bosco P, Buono S, Alberti A, ... ... Bakken T, et al. Disruptive CHD8 mutations define a subtype of autism early in development. Cell. 158: 263-76. PMID 24998929 DOI: 10.1016/J.Cell.2014.06.017 |
0.65 |
|
| 2014 |
Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, ... ... Bakken TE, et al. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature. 505: 43-9. PMID 24352235 DOI: 10.1038/Nature12886 |
0.615 |
|
| 2012 |
Bakken TE, Roddey JC, Djurovic S, Akshoomoff N, Amaral DG, Bloss CS, Casey BJ, Chang L, Ernst TM, Gruen JR, Jernigan TL, Kaufmann WE, Kenet T, Kennedy DN, Kuperman JM, et al. Association of common genetic variants in GPCPD1 with scaling of visual cortical surface area in humans. Proceedings of the National Academy of Sciences of the United States of America. 109: 3985-90. PMID 22343285 DOI: 10.1073/Pnas.1105829109 |
0.552 |
|
| 2012 |
Bakken TE, Stevens CF. Visual system scaling in teleost fish. The Journal of Comparative Neurology. 520: 142-53. PMID 21681750 DOI: 10.1002/cne.22704 |
0.473 |
|
| 2011 |
Bakken TE, Dale AM, Schork NJ. A geographic cline of skull and brain morphology among individuals of European Ancestry. Human Heredity. 72: 35-44. PMID 21849792 DOI: 10.1159/000330168 |
0.555 |
|
| 2011 |
Bakken TE, Bloss CS, Roddey JC, Joyner AH, Rimol LM, Djurovic S, Melle I, Sundet K, Agartz I, Andreassen OA, Dale AM, Schork NJ. Association of genetic variants on 15q12 with cortical thickness and cognition in schizophrenia. Archives of General Psychiatry. 68: 781-90. PMID 21810643 DOI: 10.1001/Archgenpsychiatry.2011.81 |
0.69 |
|
| 2010 |
Lakatos A, Derbeneva O, Younes D, Keator D, Bakken T, Lvova M, Brandon M, Guffanti G, Reglodi D, Saykin A, Weiner M, Macciardi F, Schork N, Wallace DC, Potkin SG, et al. Association between mitochondrial DNA variations and Alzheimer's disease in the ADNI cohort. Neurobiology of Aging. 31: 1355-63. PMID 20538375 DOI: 10.1016/J.Neurobiolaging.2010.04.031 |
0.457 |
|
| 2009 |
Joyner AH, J CR, Bloss CS, Bakken TE, Rimol LM, Melle I, Agartz I, Djurovic S, Topol EJ, Schork NJ, Andreassen OA, Dale AM. A common MECP2 haplotype associates with reduced cortical surface area in humans in two independent populations. Proceedings of the National Academy of Sciences of the United States of America. 106: 15483-8. PMID 19717458 DOI: 10.1073/Pnas.0901866106 |
0.7 |
|
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