Deborah Fygenson - Publications

Affiliations: 
Physics University of California, Santa Barbara, Santa Barbara, CA, United States 
Area:
Biophysics
Website:
https://www.physics.ucsb.edu/news/announcement/608

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Mohammed AM, Velazquez L, Chisenhall A, Schiffels D, Fygenson DK, Schulman R. Self-assembly of precisely defined DNA nanotube superstructures using DNA origami seeds. Nanoscale. PMID 27957574 DOI: 10.1039/C6Nr06983E  0.32
2016 Park CY, Fygenson DK, Saleh OA. Electrostatics and depletion determine competition between 2D nematic and 3D bundled phases of rod-like DNA nanotubes. Soft Matter. PMID 27126684 DOI: 10.1039/C6Sm00222F  0.4
2016 Del Bonis-O'Donnell JT, Pennathur S, Fygenson DK. Changes in Spectra and Conformation of Hairpin DNA-Stabilized Silver Nanoclusters Induced by Stem Sequence Perturbations. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 26685711 DOI: 10.1021/Acs.Langmuir.5B03934  0.4
2015 Hendricks GL, Velazquez L, Pham S, Qaisar N, Delaney JC, Viswanathan K, Albers L, Comolli JC, Shriver Z, Knipe DM, Kurt-Jones EA, Fygenson DK, Trevejo JM, Wang JP, Finberg RW. Heparin octasaccharide decoy liposomes inhibit replication of multiple viruses. Antiviral Research. 116: 34-44. PMID 25637710 DOI: 10.1016/J.Antiviral.2015.01.008  0.52
2015 Del Bonis-O'Donnell JT, Fygenson DK, Pennathur S. Fluorescent silver nanocluster DNA probes for multiplexed detection using microfluidic capillary electrophoresis. The Analyst. 140: 1609-15. PMID 25601044 DOI: 10.1039/C4An01735H  0.4
2013 Schiffels D, Liedl T, Fygenson DK. Nanoscale structure and microscale stiffness of DNA nanotubes. Acs Nano. 7: 6700-10. PMID 23879368 DOI: 10.1021/nn401362p  0.4
2013 Hendricks GL, Weirich KL, Viswanathan K, Li J, Shriver ZH, Ashour J, Ploegh HL, Kurt-Jones EA, Fygenson DK, Finberg RW, Comolli JC, Wang JP. Sialylneolacto-N-tetraose c (LSTc)-bearing liposomal decoys capture influenza A virus. The Journal of Biological Chemistry. 288: 8061-73. PMID 23362274 DOI: 10.1074/Jbc.M112.437202  0.52
2013 Saleh OA, Fygenson DK, Bertrand OJN, Park CY. Active DNA gels Aip Conference Proceedings. 1518: 517-519. DOI: 10.1063/1.4794627  0.52
2013 Del Bonis-O'Donnell JT, Fygenson D, Pennathur S. Tuning the mobility of fluorescent, dna-templated, silver nanoclusters for electrophoretic separations in microchannels 17th International Conference On Miniaturized Systems For Chemistry and Life Sciences, Microtas 2013. 3: 1863-1865.  0.4
2012 Bertrand OJ, Fygenson DK, Saleh OA. Active, motor-driven mechanics in a DNA gel. Proceedings of the National Academy of Sciences of the United States of America. 109: 17342-7. PMID 23045635 DOI: 10.1073/Pnas.1208732109  0.52
2012 O'Neill PR, Young K, Schiffels D, Fygenson DK. Few-atom fluorescent silver clusters assemble at programmed sites on DNA nanotubes. Nano Letters. 12: 5464-9. PMID 23025790 DOI: 10.1021/nl3017797  0.4
2012 Wang T, Schiffels D, Cuesta SM, Fygenson DK, Seeman NC. Design and characterization of 1D nanotubes and 2D periodic arrays self-assembled from DNA multi-helix bundles. Journal of the American Chemical Society. 134: 1606-16. PMID 22239727 DOI: 10.1021/Ja207976Q  0.48
2012 Puliafito A, Hufnagel L, Neveu P, Streichan S, Sigal A, Fygenson DK, Shraiman BI. Collective and single cell behavior in epithelial contact inhibition. Proceedings of the National Academy of Sciences of the United States of America. 109: 739-44. PMID 22228306 DOI: 10.1073/Pnas.1007809109  0.52
2011 Driehorst T, O'Neill P, Goodwin PM, Pennathur S, Fygenson DK. Distinct conformations of DNA-stabilized fluorescent silver nanoclusters revealed by electrophoretic mobility and diffusivity measurements. Langmuir : the Acs Journal of Surfaces and Colloids. 27: 8923-33. PMID 21682258 DOI: 10.1021/La200837Z  0.4
2011 ONeill PR, Gwinn EG, Fygenson DK. UV excitation of DNA stabilized Ag cluster fluorescence via the DNA bases Journal of Physical Chemistry C. 115: 24061-24066. DOI: 10.1021/Jp206110R  0.4
2010 Weirich KL, Israelachvili JN, Fygenson DK. Bilayer edges catalyze supported lipid bilayer formation. Biophysical Journal. 98: 85-92. PMID 20085721 DOI: 10.1016/J.Bpj.2009.09.050  0.52
2010 Oemrawsingh SSR, O'Neill P, Leijssen R, Eliel ER, Gwinn EG, Fygenson DK, Bouwmeester D. Spectral studies of optical coherence in DNA-encapsulated silver clusters Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference: 2010 Laser Science to Photonic Applications, Cleo/Qels 2010 0.4
2009 Anderson TH, Min Y, Weirich KL, Zeng H, Fygenson D, Israelachvili JN. Formation of supported bilayers on silica substrates. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 6997-7005. PMID 19354208 DOI: 10.1021/La900181C  0.4
2009 O'Neill PR, Velazquez LR, Dunn DG, Gwinn EG, Fygenson DK. Hairpins with poly-C loops stabilize four types of fluorescent Ag n: DNA Journal of Physical Chemistry C. 113: 4229-4233. DOI: 10.1021/Jp809274M  0.4
2009 Driehorst T, O'Neill P, Fygenson DK, Pennathur S. Characterization of Agn: DNA nanoclusters by capillary electrophoresis in microfluidic channels Proceedings of Conference, Microtas 2009 - the 13th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 1575-1577.  0.4
2008 Park H, Kim M, Fygenson DK. Tau-isoform dependent enhancement of taxol mobility through microtubules. Archives of Biochemistry and Biophysics. 478: 119-26. PMID 18691553 DOI: 10.1016/j.abb.2008.07.020  0.4
2008 Pennathur S, Fygenson DK. Improving fluorescence detection in lab on chip devices Lab On a Chip - Miniaturisation For Chemistry and Biology. 8: 649-652. PMID 18432330 DOI: 10.1039/b805064n  0.4
2008 Gwinn EG, O'Neill P, Guerrero AJ, Bouwmeester D, Fygenson DK. Sequence-dependent fluorescence of DNA-hosted silver nanoclusters Advanced Materials. 20: 279-283. DOI: 10.1002/Adma.200702380  0.4
2007 Schachar RA, Fygenson DK. Topographical changes of biconvex objects during equatorial traction: An analogy for accommodation of the human lens British Journal of Ophthalmology. 91: 1698-1703. PMID 16837546 DOI: 10.1136/bjo.2006.094888  0.4
2006 O'Neill P, Rothemund PW, Kumar A, Fygenson DK. Sturdier DNA nanotubes via ligation. Nano Letters. 6: 1379-83. PMID 16834415 DOI: 10.1021/nl0603505  0.4
2004 Ekani-Nkodo A, Kumar A, Fygenson DK. Joining and scission in the self-assembly of nanotubes from DNA tiles. Physical Review Letters. 93: 268301. PMID 15698032 DOI: 10.1103/PhysRevLett.93.268301  0.4
2004 Rothemund PWK, Ekani-Nkodo A, Papadakis N, Kumar A, Fygenson DK, Winfree E. Design and characterization of programmable DNA nanotubes Journal of the American Chemical Society. 126: 16344-16352. PMID 15600335 DOI: 10.1021/Ja044319L  0.4
2004 Ross JL, Santangelo CD, Makrides V, Fygenson DK. Tau induces cooperative Taxol binding to microtubules. Proceedings of the National Academy of Sciences of the United States of America. 101: 12910-5. PMID 15326286 DOI: 10.1073/Pnas.0402928101  0.4
2004 Fygenson DK, Needleman DJ, Sneppen K. Variability-based sequence alignment identifies residues responsible for functional differences in alpha and beta tubulin. Protein Science : a Publication of the Protein Society. 13: 25-31. PMID 14691218 DOI: 10.1110/Ps.03225304  0.4
2003 Ross JL, Fygenson DK. Mobility of taxol in microtubule bundles. Biophysical Journal. 84: 3959-67. PMID 12770901 DOI: 10.1016/S0006-3495(03)75123-6  0.4
2003 Gutsmann T, Fantner GE, Venturoni M, Ekani-Nkodo A, Thompson JB, Kindt JH, Morse DE, Fygenson DK, Hansma PK. Evidence that collagen fibrils in tendons are inhomogeneously structured in a tubelike manner. Biophysical Journal. 84: 2593-8. PMID 12668467 DOI: 10.1016/S0006-3495(03)75064-4  0.4
2003 Ekani-Nkodo A, Fygenson DK. Size exclusion and diffusion of fluoresceinated probes within collagen fibrils Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 67: 219091-219097.  0.4
2002 Bjorndal MT, Fygenson DK. DNA melting in the presence of fluorescent intercalating oxazole yellow dyes measured with a gel-based assay Biopolymers. 65: 40-44. PMID 12209471 DOI: 10.1002/bip.10220  0.4
1998 Goodman MF, Fygenson DK. DNA polymerase fidelity: From genetics toward a biochemical understanding Genetics. 148: 1475-1482. PMID 9560367  0.4
1998 Goulian M, Mesquita ON, Fygenson DK, Nielsen C, Andersen OS, Libchaber A. Gramicidin channel kinetics under tension. Biophysical Journal. 74: 328-37. PMID 9449333 DOI: 10.1016/S0006-3495(98)77790-2  0.4
1997 Fygenson DK, Goodman MF. Gel kinetic analysis of polymerase fidelity in the presence of multiple enzyme DNA encounters Journal of Biological Chemistry. 272: 27931-27935. PMID 9346942 DOI: 10.1074/jbc.272.44.27931  0.4
1997 Bloom LB, Chen X, Fygenson DK, Turner J, O'Donnell M, Goodman MF. Fidelity of Escherichia coli DNA polymerase III holoenzyme. The effects of beta, gamma complex processivity proteins and epsilon proofreading exonuclease on nucleotide misincorporation efficiencies. The Journal of Biological Chemistry. 272: 27919-30. PMID 9346941 DOI: 10.1074/Jbc.272.44.27919  0.4
1997 Fygenson DK, Marko JF, Libchaber A. Mechanics of microtubule-based membrane extension Physical Review Letters. 79: 4497-4500. DOI: 10.1103/Physrevlett.79.4497  0.4
1997 Fygenson DK, Chen X, Bloom L, Turnert J, O'Doanellt M, Goodman MF. Fidelity of E. coli DNA polymerase III Holoenzyme: The effects of β γ complex processivity proteins and proofreading exonuclease on nueleotide misincorporation efficiencies Faseb Journal. 11: A1369.  0.4
1996 Elbaum M, Kuchnir Fygenson D, Libchaber A. Buckling microtubules in vesicles. Physical Review Letters. 76: 4078-4081. PMID 10061186  0.4
1994 Fygenson DK, Braun E, Libchaber A. Phase diagram of microtubules. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 50: 1579-1588. PMID 9962129 DOI: 10.1103/PhysRevE.50.1579  0.4
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