| Year |
Citation |
Score |
| 2020 |
Chang AT, Chen L, Song L, Zhang S, Nikonowicz EP. 2-amino-1,3-benzothiazole-6-carboxamide Preferentially Binds the Tandem Mismatch Motif r(UY:GA). Biochemistry. PMID 32786414 DOI: 10.1021/Acs.Biochem.0C00369 |
0.44 |
|
| 2018 |
Suddala KC, Cabello-Villegas J, Michnicka M, Marshall C, Nikonowicz EP, Walter NG. Hierarchical mechanism of amino acid sensing by the T-box riboswitch. Nature Communications. 9: 1896. PMID 29760498 DOI: 10.1038/S41467-018-04305-6 |
0.77 |
|
| 2017 |
Fang X, Michnicka M, Zhang Y, Wang YX, Nikonowicz EP. Capture and release of tRNA by the T-loop receptor in the function of the T-box riboswitch. Biochemistry. PMID 28621923 DOI: 10.1021/Acs.Biochem.7B00284 |
0.395 |
|
| 2017 |
Chang AT, Tran M, Nikonowicz EP. Structure and Dynamics of the Tetra-A Loop and (A-A)-U Sequence Motif within the Coliphage GA Replicase RNA Operator. Biochemistry. PMID 28488852 DOI: 10.1021/Acs.Biochem.7B00123 |
0.462 |
|
| 2014 |
Davlieva M, Donarski J, Wang J, Shamoo Y, Nikonowicz EP. Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis. Nucleic Acids Research. 42: 10795-808. PMID 25140011 DOI: 10.1093/Nar/Gku743 |
0.477 |
|
| 2014 |
Sripakdeevong P, Cevec M, Chang AT, Erat MC, Ziegeler M, Zhao Q, Fox GE, Gao X, Kennedy SD, Kierzek R, Nikonowicz EP, Schwalbe H, Sigel RK, Turner DH, Das R. Structure determination of noncanonical RNA motifs guided by ¹H NMR chemical shifts. Nature Methods. 11: 413-6. PMID 24584194 DOI: 10.1038/Nmeth.2876 |
0.489 |
|
| 2014 |
Thapar R, Denmon AP, Nikonowicz EP. Recognition modes of RNA tetraloops and tetraloop-like motifs by RNA-binding proteins. Wiley Interdisciplinary Reviews. Rna. 5: 49-67. PMID 24124096 DOI: 10.1002/Wrna.1196 |
0.776 |
|
| 2013 |
Chang AT, Nikonowicz EP. Solution NMR determination of hydrogen bonding and base pairing between the glyQS T box riboswitch Specifier domain and the anticodon loop of tRNA(Gly). Febs Letters. 587: 3495-9. PMID 24036450 DOI: 10.1016/J.Febslet.2013.09.003 |
0.362 |
|
| 2013 |
Nikonowicz E, Wang J, Moran S, Donarski J. Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Lv0/Pdb |
0.354 |
|
| 2012 |
Chang AT, Nikonowicz EP. Solution nuclear magnetic resonance analyses of the anticodon arms of proteinogenic and nonproteinogenic tRNA(Gly). Biochemistry. 51: 3662-74. PMID 22468768 DOI: 10.1021/Bi201900J |
0.458 |
|
| 2011 |
Hammerstrom TG, Roh JH, Nikonowicz EP, Koehler TM. Bacillus anthracis virulence regulator AtxA: oligomeric state, function and CO(2) -signalling. Molecular Microbiology. 82: 634-47. PMID 21923765 DOI: 10.1111/J.1365-2958.2011.07843.X |
0.325 |
|
| 2011 |
Denmon AP, Wang J, Nikonowicz EP. Conformation effects of base modification on the anticodon stem-loop of Bacillus subtilis tRNA(Tyr). Journal of Molecular Biology. 412: 285-303. PMID 21782828 DOI: 10.1016/J.Jmb.2011.07.010 |
0.791 |
|
| 2011 |
Wang J, Nikonowicz EP. Solution structure of the K-turn and Specifier Loop domains from the Bacillus subtilis tyrS T-box leader RNA. Journal of Molecular Biology. 408: 99-117. PMID 21333656 DOI: 10.1016/J.Jmb.2011.02.014 |
0.453 |
|
| 2010 |
Wang J, Henkin TM, Nikonowicz EP. NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA Nucleic Acids Research. 38: 3388-3398. PMID 20110252 DOI: 10.1093/Nar/Gkq020 |
0.49 |
|
| 2008 |
Xia Y, Moran S, Nikonowicz EP, Gao X. Z-restored spin-echo 13C 1D spectrum of straight baseline free of hump, dip and roll. Magnetic Resonance in Chemistry : Mrc. 46: 432-5. PMID 18288679 DOI: 10.1002/Mrc.2195 |
0.333 |
|
| 2006 |
Tworowska I, Nikonowicz EP. Base pairing within the psi32,psi39-modified anticodon arm of Escherichia coli tRNA(Phe). Journal of the American Chemical Society. 128: 15570-1. PMID 17147349 DOI: 10.1021/Ja0659368 |
0.451 |
|
| 2005 |
Cabello-Villegas J, Nikonowicz EP. Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe. Nucleic Acids Research. 33: 6961-71. PMID 16377777 DOI: 10.1093/Nar/Gki1004 |
0.797 |
|
| 2005 |
Jaroniec CP, Boisbouvier J, Tworowska I, Nikonowicz EP, Bax A. Accurate measurement of 15N-13C residual dipolar couplings in nucleic acids. Journal of Biomolecular Nmr. 31: 231-41. PMID 15803396 DOI: 10.1007/S10858-005-0646-2 |
0.459 |
|
| 2004 |
Boisbouvier J, Bryce DL, O'neil-Cabello E, Nikonowicz EP, Bax A. Resolution-optimized NMR measurement of (1)D(CH), (1)D(CC) and (2)D(CH) residual dipolar couplings in nucleic acid bases. Journal of Biomolecular Nmr. 30: 287-301. PMID 15756460 DOI: 10.1007/S10858-005-1846-5 |
0.735 |
|
| 2004 |
O'Neil-Cabello E, Wu Z, Bryce DL, Nikonowicz EP, Bax A. Enhanced spectral resolution in RNA HCP spectra for measurement of (3)J(C2'P) and (3)J(C4'P) couplings and (31)P chemical shift changes upon weak alignment. Journal of Biomolecular Nmr. 30: 61-70. PMID 15452435 DOI: 10.1023/B:Jnmr.0000042952.66982.38 |
0.773 |
|
| 2004 |
O'Neil-Cabello E, Bryce DL, Nikonowicz EP, Bax A. Measurement of five dipolar couplings from a single 3D NMR multiplet applied to the study of RNA dynamics. Journal of the American Chemical Society. 126: 66-7. PMID 14709062 DOI: 10.1021/Ja038314K |
0.779 |
|
| 2004 |
Cabello-Villegas J, Tworowska I, Nikonowicz EP. Metal ion stabilization of the U-turn of the A37 N6-dimethylallyl-modified anticodon stem-loop of Escherichia coli tRNAPhe. Biochemistry. 43: 55-66. PMID 14705931 DOI: 10.1021/Bi0353676 |
0.801 |
|
| 2003 |
Miclet E, O'Neil-Cabello E, Nikonowicz EP, Live D, Bax A. 1H-1H dipolar couplings provide a unique probe of RNA backbone structure. Journal of the American Chemical Society. 125: 15740-1. PMID 14677953 DOI: 10.1021/Ja0388212 |
0.783 |
|
| 2002 |
Cabello-Villegas J, Winkler ME, Nikonowicz EP. Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe). Journal of Molecular Biology. 319: 1015-34. PMID 12079344 DOI: 10.1016/S0022-2836(02)00382-0 |
0.815 |
|
| 2002 |
Dejong ES, Marzluff WF, Nikonowicz EP. NMR structure and dynamics of the RNA-binding site for the histone mRNA stem-loop binding protein Rna. 8: 83-96. PMID 11871662 DOI: 10.1017/S1355838202013869 |
0.788 |
|
| 2002 |
Cabello-Villegas J, Winkler ME, Nikonowicz EP. Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb1J4Y/Pdb |
0.362 |
|
| 2001 |
Nikonowicz EP. Preparation and use of 2H-labeled RNA oligonucleotides in nuclear magnetic resonance studies Methods in Enzymology. 338: 320-339. PMID 11460556 DOI: 10.1016/S0076-6879(02)38227-2 |
0.425 |
|
| 2000 |
Cabello-Villegas J, Nikonowicz EP. Discriminating duplex and hairpin oligonucleotides using chemical shifts: application to the anticodon stem-loop of Escherichia coli tRNA(Phe). Nucleic Acids Research. 28: E74. PMID 10908367 DOI: 10.1093/Nar/28.15.E74 |
0.813 |
|
| 2000 |
Smith JS, Nikonowicz EP. Phosphorothioate substitution can substantially alter RNA conformation Biochemistry. 39: 5642-5652. PMID 10801314 DOI: 10.1021/Bi992712B |
0.498 |
|
| 1999 |
Nikonowicz EP, Smith JS. NMR spectroscopic investigations of phosphorothioate containing RNAS Phosphorus, Sulfur and Silicon and Related Elements. 144: 305-308. DOI: 10.1080/10426509908546242 |
0.465 |
|
| 1998 |
Smith JS, Nikonowicz EP. NMR structure and dynamics of an RNA motif common to the spliceosome branch-point helix and the RNA-binding site for phage GA coat protein Biochemistry. 37: 13486-13498. PMID 9753434 DOI: 10.1021/Bi981558A |
0.468 |
|
| 1998 |
Kalurachchi K, Nikonowicz EP. NMR structure determination of the binding site for ribosomal protein S8 from Escherichia coli 16 S rRNA Journal of Molecular Biology. 280: 639-654. PMID 9677294 DOI: 10.1006/Jmbi.1998.1915 |
0.485 |
|
| 1998 |
Nikonowicz EP, Michnicka M, DeJong E. Improved NOE-Based Sequential Correlation of Base and 1‘ Proton Resonances in Labeled Nucleic Acids Journal of the American Chemical Society. 120: 3813-3814. DOI: 10.1021/Ja973961V |
0.749 |
|
| 1997 |
Nikonowicz EP, Kalurachchi K, Dejong E. Comparison of H5 and H8 relaxation rates of a 2H/13C/15N labeled RNA oligonucleotide with selective protonation at C5 and C8 Febs Letters. 415: 109-113. PMID 9326379 DOI: 10.1016/S0014-5793(97)01034-X |
0.806 |
|
| 1997 |
Kalurachchi K, Uma K, Zimmermann RA, Nikonowicz EP. Structural features of the binding site for ribosomal protein S8 in Escherichia coli 16S rRNA defined using NMR spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 94: 2139-44. PMID 9122161 DOI: 10.1073/Pnas.94.6.2139 |
0.42 |
|
| 1997 |
Nikonowicz EP, Michnicka M, Kalurachchi K, DeJong E. Preparation and characterization of a uniformly 2H/15N-labeled RNA oligonucleotide for NMR studies Nucleic Acids Research. 25: 1390-1396. PMID 9060434 DOI: 10.1093/Nar/25.7.1390 |
0.813 |
|
| 1995 |
Uma K, Nikonowicz EP, Kaluarachchi K, Wu H, Wower IK, Zimmermann RA. Structural characterization of Escherichia coli ribosomal protein S8 and its binding site in 16S ribosomal RNA. Nucleic Acids Symposium Series. 8-10. PMID 8643407 |
0.317 |
|
| 1994 |
Aboul-ela F, Nikonowicz EP, Pardi A. Distinguishing between duplex and hairpin forms of RNA by 15N-1H heteronuclear NMR. Febs Letters. 347: 261-4. PMID 7518398 DOI: 10.1016/0014-5793(94)00564-8 |
0.506 |
|
| 1994 |
Farmer BT, Müller L, Nikonowicz EP, Pardi A. Unambiguous through-bond sugar-to-base correlations for purines in 13C,15N-labeled nucleic acids: the HsCsNb,HsCs(N)bCb, and HbNbCb experiments. Journal of Biomolecular Nmr. 4: 129-33. PMID 7510555 DOI: 10.1007/Bf00178341 |
0.441 |
|
| 1993 |
Nikonowicz EP, Pardi A. An efficient procedure for assignment of the proton, carbon and nitrogen resonances in 13C/15N labeled nucleic acids. Journal of Molecular Biology. 232: 1141-56. PMID 8396648 DOI: 10.1006/Jmbi.1993.1466 |
0.483 |
|
| 1993 |
Pardi A, Legault P, Nikonowicz EP. Structural studies of catalytic RNAs by heteronuclear multi-dimensional NMR. Nucleic Acids Symposium Series. 116. PMID 8247730 |
0.379 |
|
| 1993 |
Farmer BT, Muller L, Nikonowicz EP, Pardi A. Unambiguous resonance assignments in carbon-13, nitrogen-15-labeled nucleic acids by 3D triple-resonance NMR Journal of the American Chemical Society. 115: 11040-11041. DOI: 10.1021/Ja00076A092 |
0.327 |
|
| 1992 |
Nikonowicz EP, Sirr A, Legault P, Jucker FM, Baer LM, Pardi A. Preparation of 13C and 15N labelled RNAs for heteronuclear multi-dimensional NMR studies. Nucleic Acids Research. 20: 4507-13. PMID 1383927 DOI: 10.1093/Nar/20.17.4507 |
0.511 |
|
| 1992 |
Nikonowicz EP, Pardi A. Three-dimensional heteronuclear NMR studies of RNA. Nature. 355: 184-6. PMID 1370345 DOI: 10.1038/355184A0 |
0.528 |
|
| 1992 |
Pardi A, Nikonowicz EP. Simple procedure for resonance assignment of the sugar protons in carbon-13 labeled RNAs Journal of the American Chemical Society. 114: 9202-9203. DOI: 10.1021/Ja00049A070 |
0.393 |
|
| 1992 |
Nikonowicz EP, Gorenstein DG. Comparison of the x-ray crystal, NMR solution, and molecular dynamics calculated structures of a tandem G.cntdot.A mismatched oligonucleotide duplex Journal of the American Chemical Society. 114: 7494-7503. DOI: 10.1021/Ja00045A024 |
0.536 |
|
| 1992 |
Nikonowicz EP, Pardi A. Application of four-dimensional heteronuclear NMR to the structure determination of a uniformly 13C labeled RNA Journal of the American Chemical Society. 114: 1082-1083. DOI: 10.1021/Ja00029A043 |
0.505 |
|
| 1992 |
Nikonowicz EP, Gorenstein DG. Comparison of the X-ray crystal, NMR solution, and molecular dynamics calculated structures of a tandem g·a mismatched oligonucleotide duplex Journal of the American Chemical Society. 114: 7494-7503. |
0.475 |
|
| 1991 |
Nikonowicz EP, Meadows RP, Fagan P, Gorenstein DG. NMR structural refinement of a tandem G·A mismatched decamer d(CCAAGATTGG)2 via the hybrid matrix procedure Biochemistry. 30: 1323-1334. PMID 1991114 DOI: 10.1021/Bi00219A024 |
0.542 |
|
| 1991 |
Meadows RP, Nikonowicz EP, Jones CR, Bastian JW, Gorenstein DG. Two-dimensional NMR and structure determination of salmon calcitonin in methanol. Biochemistry. 30: 1247-54. PMID 1991104 DOI: 10.1021/Bi00219A012 |
0.574 |
|
| 1990 |
Nikonowicz EP, Meadows RP, Gorenstein DG. NMR structural refinement of an extrahelical adenosine tridecamer d(CGCAGAATTGGCG)2 via a hybrid relaxation matrix procedure Biochemistry. 29: 4193-4204. PMID 2361138 DOI: 10.1021/Bi00469A024 |
0.539 |
|
| 1990 |
Nikonowicz EP, Gorenstein DG. Two-dimensional 1H and 31P NMR spectra and restrained molecular dynamics structure of a mismatched GA decamer oligodeoxyribonucleotide duplex Biochemistry. 29: 8845-8858. PMID 2271561 DOI: 10.1021/Bi00489A048 |
0.604 |
|
| 1989 |
Nikonowicz E, Roongta V, Jones CR, Gorenstein DG. Two-dimensional 1H and31P NMR spectra and restrained molecular dynamics structure of an extrahelical adenosine tridecamer oligodeoxyribonucleotide duplex Biochemistry. 28: 8714-8725. PMID 2557907 DOI: 10.1021/Bi00448A007 |
0.61 |
|
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