Year |
Citation |
Score |
2012 |
Mamonov AB, Lettieri S, Ding Y, Sarver JL, Palli R, Cunningham TF, Saxena S, Zuckerman DM. Tunable, mixed-resolution modeling using library-based Monte Carlo and graphics processing units. Journal of Chemical Theory and Computation. 8: 2921-2929. PMID 23162384 DOI: 10.1021/Ct300263Z |
0.331 |
|
2011 |
Lettieri S, Mamonov AB, Zuckerman DM. Extending fragment-based free energy calculations with library Monte Carlo simulation: annealing in interaction space. Journal of Computational Chemistry. 32: 1135-43. PMID 21387340 DOI: 10.1002/Jcc.21695 |
0.352 |
|
2011 |
Cashman DJ, Mamonov AB, Bhatt D, Zuckerman DM. Thermal motions of the E. coli glucose-galactose binding protein studied using well-sampled semi-atomistic simulations Current Topics in Medicinal Chemistry. 11: 211-220. PMID 20939787 DOI: 10.1016/J.Bpj.2008.12.3752 |
0.357 |
|
2011 |
Mamonov AB, Zhang X, Zuckerman DM. Rapid sampling of all-atom peptides using a library-based polymer-growth approach. Journal of Computational Chemistry. 32: 396-405. PMID 20734315 DOI: 10.1002/Jcc.21626 |
0.323 |
|
2011 |
Ding Y, Mamonov AB, Zuckerman DM. Improved Library-Based Monte Carlo, Applied to Multi-Level Sampling Biophysical Journal. 100: 155a. DOI: 10.1016/J.Bpj.2010.12.1057 |
0.376 |
|
2010 |
Ding Y, Mamonov AB, Zuckerman DM. Efficient equilibrium sampling of all-atom peptides using library-based Monte Carlo. The Journal of Physical Chemistry. B. 114: 5870-7. PMID 20380366 DOI: 10.1021/Jp910112D |
0.364 |
|
2010 |
Mamonov AB, Zuckerman DM. Library-Based Monte Carlo as a Convenient Platform for Variable-Resolution Protein Models Biophysical Journal. 98: 571a. DOI: 10.1016/J.Bpj.2009.12.3101 |
0.336 |
|
2009 |
Mamonov AB, Bhatt D, Cashman DJ, Ding Y, Zuckerman DM. General library-based Monte Carlo technique enables equilibrium sampling of semi-atomistic protein models. The Journal of Physical Chemistry. B. 113: 10891-904. PMID 19594147 DOI: 10.1021/Jp901322V |
0.38 |
|
2009 |
Zhang X, Mamonov AB, Zuckerman DM. Absolute free energies estimated by combining precalculated molecular fragment libraries. Journal of Computational Chemistry. 30: 1680-91. PMID 19504588 DOI: 10.1002/Jcc.21337 |
0.325 |
|
2009 |
Mamonov AB, Zuckerman DM. Improving The Computational Efficiency Of Non-Dynamical Approaches For Equilibrium Sampling Of All-Atom Protein Models Biophysical Journal. 96: 407a. DOI: 10.1016/J.Bpj.2008.12.2075 |
0.358 |
|
2007 |
Mamonov AB, Coalson RD, Zeidel ML, Mathai JC. Water and deuterium oxide permeability through aquaporin 1: MD predictions and experimental verification. The Journal of General Physiology. 130: 111-6. PMID 17591989 DOI: 10.1085/Jgp.200709810 |
0.532 |
|
2007 |
Cheng MH, Mamonov AB, Dukes JW, Coalson RD. Modeling the fast gating mechanism in the ClC-0 chloride channel. The Journal of Physical Chemistry. B. 111: 5956-65. PMID 17487993 DOI: 10.1021/Jp063993H |
0.62 |
|
2006 |
Mamonov AB, Kurnikova MG, Coalson RD. Diffusion constant of K+ inside Gramicidin A: a comparative study of four computational methods. Biophysical Chemistry. 124: 268-78. PMID 16797116 DOI: 10.1016/J.Bpc.2006.03.019 |
0.577 |
|
2003 |
Mamonov AB, Coalson RD, Nitzan A, Kurnikova MG. The role of the dielectric barrier in narrow biological channels: a novel composite approach to modeling single-channel currents. Biophysical Journal. 84: 3646-61. PMID 12770873 DOI: 10.1016/S0006-3495(03)75095-4 |
0.587 |
|
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