Year |
Citation |
Score |
2022 |
van de Velde CC, Joseph C, Biclot A, Huys GRB, Pinheiro VB, Bernaerts K, Raes J, Faust K. Fast quantification of gut bacterial species in cocultures using flow cytometry and supervised classification. Isme Communications. 2: 40. PMID 37938658 DOI: 10.1038/s43705-022-00123-6 |
0.529 |
|
2022 |
van de Velde C, Joseph C, Simoens K, Raes J, Bernaerts K, Faust K. Technical versus biological variability in a synthetic human gut community. Gut Microbes. 15: 2155019. PMID 36580382 DOI: 10.1080/19490976.2022.2155019 |
0.568 |
|
2022 |
Beller L, Deboutte W, Vieira-Silva S, Falony G, Tito RY, Rymenans L, Yinda CK, Vanmechelen B, Van Espen L, Jansen D, Shi C, Zeller M, Maes P, Faust K, Van Ranst M, et al. The virota and its transkingdom interactions in the healthy infant gut. Proceedings of the National Academy of Sciences of the United States of America. 119: e2114619119. PMID 35320047 DOI: 10.1073/pnas.2114619119 |
0.661 |
|
2021 |
Röttjers L, Vandeputte D, Raes J, Faust K. Null-model-based network comparison reveals core associations. Isme Communications. 1: 36. PMID 37938641 DOI: 10.1038/s43705-021-00036-w |
0.541 |
|
2021 |
Deutschmann IM, Lima-Mendez G, Krabberød AK, Raes J, Vallina SM, Faust K, Logares R. Correction to: Disentangling environmental effects in microbial association networks. Microbiome. 9: 245. PMID 34933691 DOI: 10.1186/s40168-021-01209-4 |
0.518 |
|
2021 |
Beller L, Deboutte W, Falony G, Vieira-Silva S, Tito RY, Valles-Colomer M, Rymenans L, Jansen D, Van Espen L, Papadaki MI, Shi C, Yinda CK, Zeller M, Faust K, Van Ranst M, et al. Successional Stages in Infant Gut Microbiota Maturation. Mbio. 12: e0185721. PMID 34903050 DOI: 10.1128/mBio.01857-21 |
0.672 |
|
2021 |
Gryp T, Faust K, Van Biesen W, Huys GRB, Verbeke F, Speeckaert M, Raes J, Vaneechoutte M, Joossens M, Glorieux G. Gut Microbiome Profiling Uncovers a Lower Abundance of in Advanced Stages of Chronic Kidney Disease. Journal of Personalized Medicine. 11. PMID 34834470 DOI: 10.3390/jpm11111118 |
0.477 |
|
2021 |
Deutschmann IM, Lima-Mendez G, Krabberød AK, Raes J, Vallina SM, Faust K, Logares R. Disentangling environmental effects in microbial association networks. Microbiome. 9: 232. PMID 34823593 DOI: 10.1186/s40168-021-01141-7 |
0.536 |
|
2021 |
Vandeputte D, De Commer L, Tito RY, Kathagen G, Sabino J, Vermeire S, Faust K, Raes J. Temporal variability in quantitative human gut microbiome profiles and implications for clinical research. Nature Communications. 12: 6740. PMID 34795283 DOI: 10.1038/s41467-021-27098-7 |
0.521 |
|
2021 |
Cao X, Zhao D, Li C, Röttjers L, Faust K, Zhang H. Regime transition Shapes the Composition, Assembly Processes, and Co-occurrence Pattern of Bacterioplankton Community in a Large Eutrophic Freshwater Lake. Microbial Ecology. PMID 34585289 DOI: 10.1007/s00248-021-01878-6 |
0.322 |
|
2020 |
Martínez Arbas S, Narayanasamy S, Herold M, Lebrun LA, Hoopmann MR, Li S, Lam TJ, Kunath BJ, Hicks ND, Liu CM, Price LB, Laczny CC, Gillece JD, Schupp JM, Keim PS, ... ... Faust K, et al. Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics. Nature Microbiology. PMID 33139880 DOI: 10.1038/s41564-020-00794-8 |
0.367 |
|
2020 |
Ma B, Wang Y, Ye S, Liu S, Stirling E, Gilbert JA, Faust K, Knight R, Jansson JK, Cardona C, Röttjers L, Xu J. Earth microbial co-occurrence network reveals interconnection pattern across microbiomes. Microbiome. 8: 82. PMID 32498714 DOI: 10.1186/S40168-020-00857-2 |
0.479 |
|
2019 |
D'hoe K, Vet S, Faust K, Moens F, Falony G, Gonze D, Lloréns-Rico V, Gelens L, Danckaert J, De Vuyst L, Raes J. Correction: Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community. Elife. 8. PMID 31682225 DOI: 10.7554/Elife.53217 |
0.699 |
|
2019 |
Vrancken G, Gregory AC, Huys GRB, Faust K, Raes J. Synthetic ecology of the human gut microbiota. Nature Reviews. Microbiology. PMID 31578461 DOI: 10.1038/S41579-019-0264-8 |
0.608 |
|
2019 |
McBain AJ, O'Neill CA, Amezquita A, Price LJ, Faust K, Tett A, Segata N, Swann JR, Smith AM, Murphy B, Hoptroff M, James G, Reddy Y, Dasgupta A, Ross T, et al. Consumer Safety Considerations of Skin and Oral Microbiome Perturbation. Clinical Microbiology Reviews. 32. PMID 31366612 DOI: 10.1128/Cmr.00051-19 |
0.324 |
|
2019 |
Faust K. Towards a Better Understanding of Microbial Community Dynamics through High-Throughput Cultivation and Data Integration. Msystems. 4. PMID 31138719 DOI: 10.1128/mSystems.00101-19 |
0.312 |
|
2019 |
Goetghebuer L, Bonal M, Faust K, Servais P, George IF. The Dynamic of a River Model Bacterial Community in Two Different Media Reveals a Divergent Succession and an Enhanced Growth of Most Strains Compared to Monocultures. Microbial Ecology. PMID 30680433 DOI: 10.1007/S00248-019-01322-W |
0.346 |
|
2018 |
Joossens M, Faust K, Gryp T, Nguyen ATL, Wang J, Eloot S, Schepers E, Dhondt A, Pletinck A, Vieira-Silva S, Falony G, Vaneechoutte M, Vanholder R, Van Biesen W, Huys GRB, et al. Gut microbiota dynamics and uraemic toxins: one size does not fit all. Gut. PMID 30464044 DOI: 10.1136/Gutjnl-2018-317561 |
0.691 |
|
2018 |
D'hoe K, Vet S, Faust K, Moens F, Falony G, Gonze D, Lloréns-Rico V, Gelens L, Danckaert J, De Vuyst L, Raes J. Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community. Elife. 7. PMID 30322445 DOI: 10.7554/Elife.37090 |
0.705 |
|
2018 |
Röttjers L, Faust K. From hairballs to hypotheses - biological insights from microbial networks. Fems Microbiology Reviews. PMID 30085090 DOI: 10.1093/femsre/fuy030 |
0.333 |
|
2018 |
Röttjers L, Faust K. From hairballs to hypotheses - biological insights from microbial networks. Fems Microbiology Reviews. PMID 30085090 DOI: 10.1093/Femsre/Fuy030 |
0.439 |
|
2018 |
Ma B, Zhao K, Lv X, Su W, Dai Z, Gilbert JA, Brookes PC, Faust K, Xu J. Genetic correlation network prediction of forest soil microbial functional organization. The Isme Journal. PMID 30046166 DOI: 10.1038/S41396-018-0232-8 |
0.358 |
|
2018 |
Gonze D, Coyte KZ, Lahti L, Faust K. Microbial communities as dynamical systems. Current Opinion in Microbiology. 44: 41-49. PMID 30041083 DOI: 10.1016/J.Mib.2018.07.004 |
0.403 |
|
2018 |
Faust K, Bauchinger F, Laroche B, de Buyl S, Lahti L, Washburne AD, Gonze D, Widder S. Signatures of ecological processes in microbial community time series. Microbiome. 6: 120. PMID 29954432 DOI: 10.1186/S40168-018-0496-2 |
0.429 |
|
2018 |
Parente E, Zotta T, Faust K, De Filippis F, Ercolini D. Structure of association networks in food bacterial communities. Food Microbiology. 73: 49-60. PMID 29526226 DOI: 10.1016/J.Fm.2017.12.010 |
0.459 |
|
2018 |
Muller EEL, Faust K, Widder S, Herold M, Arbas SM, Wilmes P. Using metabolic networks to resolve ecological properties of microbiomes Current Opinion in Systems Biology. 8: 73-80. DOI: 10.1016/J.Coisb.2017.12.004 |
0.44 |
|
2017 |
Gonze D, Lahti L, Raes J, Faust K. Multi-stability and the origin of microbial community types. The Isme Journal. PMID 28475180 DOI: 10.1038/Ismej.2017.60 |
0.582 |
|
2017 |
Wang H, Wei Z, Mei L, Gu J, Yin S, Faust K, Raes J, Deng Y, Wang Y, Shen Q, Yin S. Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil Soil Biology and Biochemistry. 105: 227-235. DOI: 10.1016/J.Soilbio.2016.11.029 |
0.61 |
|
2016 |
Pérez-Valera E, Goberna M, Faust K, Raes J, García C, Verdú M. Fire modifies the phylogenetic structure of soil bacterial co-occurrence networks. Environmental Microbiology. PMID 27871135 DOI: 10.1111/1462-2920.13609 |
0.607 |
|
2016 |
Faust K, Raes J. CoNet app: inference of biological association networks using Cytoscape. F1000research. 5: 1519. PMID 27853510 DOI: 10.12688/F1000Research.9050.2 |
0.597 |
|
2016 |
Bálint M, Bahram M, Eren AM, Faust K, Fuhrman JA, Lindahl B, O'Hara RB, Öpik M, Sogin ML, Unterseher M, Tedersoo L. Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes. Fems Microbiology Reviews. PMID 27358393 DOI: 10.1093/Femsre/Fuw017 |
0.378 |
|
2016 |
Günther S, Faust K, Schumann J, Harms H, Raes J, Müller S. Species-sorting and mass-transfer paradigms control managed natural metacommunities. Environmental Microbiology. PMID 27338005 DOI: 10.1111/1462-2920.13402 |
0.586 |
|
2016 |
Faust K, Raes J. Host-microbe interaction: Rules of the game for microbiota. Nature. 534: 182-3. PMID 27279206 DOI: 10.1038/534182A |
0.586 |
|
2016 |
Mattiello F, Verbist B, Faust K, Raes J, Shannon WD, Bijnens L, Thas O. A web application for sample size and power calculation in case-control microbiome studies. Bioinformatics (Oxford, England). PMID 27153704 DOI: 10.1093/Bioinformatics/Btw099 |
0.506 |
|
2016 |
Falony G, Joossens M, Vieira-Silva S, Wang J, Darzi Y, Faust K, Kurilshikov A, Bonder MJ, Valles-Colomer M, Vandeputte D, Tito RY, Chaffron S, Rymenans L, Verspecht C, De Sutter L, et al. Population-level analysis of gut microbiome variation. Science (New York, N.Y.). 352: 560-4. PMID 27126039 DOI: 10.1126/Science.Aad3503 |
0.701 |
|
2016 |
Weiss S, Van Treuren W, Lozupone C, Faust K, Friedman J, Deng Y, Xia LC, Xu ZZ, Ursell L, Alm EJ, Birmingham A, Cram JA, Fuhrman JA, Raes J, Sun F, et al. Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. The Isme Journal. PMID 26905627 DOI: 10.1038/Ismej.2015.235 |
0.594 |
|
2015 |
Edwards RA, McNair K, Faust K, Raes J, Dutilh BE. Computational approaches to predict bacteriophage-host relationships. Fems Microbiology Reviews. PMID 26657537 DOI: 10.1093/Femsre/Fuv048 |
0.541 |
|
2015 |
Faust K, Lima-Mendez G, Lerat JS, Sathirapongsasuti JF, Knight R, Huttenhower C, Lenaerts T, Raes J. Cross-biome comparison of microbial association networks. Frontiers in Microbiology. 6: 1200. PMID 26579106 DOI: 10.3389/Fmicb.2015.01200 |
0.632 |
|
2015 |
Faust K, Lahti L, Gonze D, de Vos WM, Raes J. Metagenomics meets time series analysis: unraveling microbial community dynamics. Current Opinion in Microbiology. 25: 56-66. PMID 26005845 DOI: 10.1016/J.Mib.2015.04.004 |
0.622 |
|
2015 |
Lima-Mendez G, Faust K, Henry N, Decelle J, Colin S, Carcillo F, Chaffron S, Ignacio-Espinosa JC, Roux S, Vincent F, Bittner L, Darzi Y, Wang J, Audic S, Berline L, et al. Ocean plankton. Determinants of community structure in the global plankton interactome. Science (New York, N.Y.). 348: 1262073. PMID 25999517 DOI: 10.1126/Science.1262073 |
0.666 |
|
2015 |
Navarrete AA, Tsai SM, Mendes LW, Faust K, de Hollander M, Cassman NA, Raes J, van Veen JA, Kuramae EE. Soil microbiome responses to the short-term effects of Amazonian deforestation. Molecular Ecology. 24: 2433-48. PMID 25809788 DOI: 10.1111/Mec.13172 |
0.523 |
|
2014 |
Faust K, Raes J. Comparative analysis of biome-specific microbial association networks F1000research. 5. DOI: 10.7490/F1000Research.1094770.1 |
0.57 |
|
2013 |
Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, et al. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. The Isme Journal. 7: 1678-95. PMID 23575371 DOI: 10.1038/Ismej.2013.59 |
0.628 |
|
2012 |
Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, Raes J, Huttenhower C. Microbial co-occurrence relationships in the human microbiome. Plos Computational Biology. 8: e1002606. PMID 22807668 DOI: 10.1371/Journal.Pcbi.1002606 |
0.635 |
|
2012 |
Faust K, Raes J. Microbial interactions: from networks to models. Nature Reviews. Microbiology. 10: 538-50. PMID 22796884 DOI: 10.1038/Nrmicro2832 |
0.603 |
|
2012 |
Methé BA, Nelson KE, Pop M, Creasy HH, Giglio MG, Huttenhower C, Gevers D, Petrosino JF, Abubucker S, Badger JH, Chinwalla AT, Earl AM, Fitzgerald MG, Fulton RS, Hallsworth-Pepin K, ... ... Faust K, et al. A framework for human microbiome research Nature. 486: 215-221. PMID 22699610 DOI: 10.1038/Nature11209 |
0.383 |
|
2012 |
Huttenhower C, Gevers D, Knight R, Abubucker S, Badger JH, Chinwalla AT, Creasy HH, Earl AM, Fitzgerald MG, Fulton RS, Giglio MG, Hallsworth-Pepin K, Lobos EA, Madupu R, Magrini V, ... ... Faust K, et al. Structure, function and diversity of the healthy human microbiome Nature. 486: 207-214. PMID 22699609 DOI: 10.1038/Nature11234 |
0.445 |
|
2012 |
Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J, Gordon JI, Knight R. Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Research. 22: 1974-84. PMID 22665442 DOI: 10.1101/Gr.138198.112 |
0.609 |
|
2012 |
Faust K, van Helden J. Predicting metabolic pathways by sub-network extraction. Methods in Molecular Biology (Clifton, N.J.). 804: 107-30. PMID 22144151 DOI: 10.1007/978-1-61779-361-5_7 |
0.31 |
|
2011 |
Faust K, Croes D, van Helden J. Prediction of metabolic pathways from genome-scale metabolic networks. Bio Systems. 105: 109-21. PMID 21645586 DOI: 10.1016/J.Biosystems.2011.05.004 |
0.323 |
|
2010 |
Faust K, Dupont P, Callut J, van Helden J. Pathway discovery in metabolic networks by subgraph extraction. Bioinformatics (Oxford, England). 26: 1211-8. PMID 20228128 DOI: 10.1093/Bioinformatics/Btq105 |
0.335 |
|
2009 |
Faust K, Croes D, van Helden J. In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. Bioinformatics (Oxford, England). 25: 3202-5. PMID 19776213 DOI: 10.1093/Bioinformatics/Btp557 |
0.302 |
|
2009 |
Faust K, Croes D, van Helden J. Metabolic pathfinding using RPAIR annotation. Journal of Molecular Biology. 388: 390-414. PMID 19281817 DOI: 10.1016/J.Jmb.2009.03.006 |
0.323 |
|
2008 |
Brohée S, Faust K, Lima-Mendez G, Vanderstocken G, van Helden J. Network Analysis Tools: from biological networks to clusters and pathways. Nature Protocols. 3: 1616-29. PMID 18802442 DOI: 10.1038/Nprot.2008.100 |
0.314 |
|
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